[med-svn] [r-cran-pscbs] 02/03: initial debianization

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository r-cran-pscbs.

commit ae6c5d9e1a459fb01e753bb7af563fc506e2b595
Author: Michael R. Crusoe <crusoe at ucdavis.edu>
Date:   Sat Jun 25 13:57:57 2016 -0700

    initial debianization
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 29 +++++++++++++++++++++++++++++
 debian/copyright     | 16 ++++++++++++++++
 debian/rules         |  4 ++++
 debian/source/format |  1 +
 debian/watch         |  7 +++++++
 7 files changed, 63 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..08b4a37
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-pscbs (0.61.0-1) UNRELEASED; urgency=medium
+
+  * Initial release. (Closes: #XXXXXX)
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sat, 25 Jun 2016 13:58:30 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..752512f
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,29 @@
+Source: r-cran-pscbs
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Michael R. Crusoe <michael.crusoe at gmail.com>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+               cdbs,
+               r-base-dev,
+               r-cran-r.methodss3,
+               r-cran-r.oo,
+               r-cran-r.utils,
+               r-cran-matrixstats,
+               r-cran-r.cache,
+               r-bioc-dnacopy,
+               r-cran-future
+Standards-Version: 3.9.8
+Homepage: https://github.com/HenrikBengtsson/PSCBS
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-cran-pscbs.git
+Vcs-Git: https://anonscm.debian.org/debian-med/r-cran-pscbs.git
+
+Package: r-cran-pscbs
+Architecture: any
+Depends: ${R:Depends},
+         ${misc:Depends},
+         ${shlibs:Depends}
+Description: R package: Analysis of Parent-Specific DNA Copy Numbers
+ Segmentation of allele-specific DNA copy number data and detection of regions
+ with abnormal copy number within each parental chromosome. Both tumor-normal
+ paired and tumoronly analyses are supported.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..c66dd84
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,16 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PSCBS
+Source: https://github.com/HenrikBengtsson/PSCBS
+
+Files: *
+Copyright: Henrik Bengtsson [aut, cre, cph]
+           Pierre Neuvial [aut]
+           Venkatraman E. Seshan [aut]
+           Adam B. Olshen [aut]
+           Paul T. Spellman [aut]
+           Richard A. Olshen [aut]
+License: GPL-2.0+
+
+Files: debian/*
+Copyright: © 2016 Michael R. Crusoe <michael.crusoe at gmail.com>
+License: GPL-2.0+
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..71809fc
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+debRreposname=cran
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..4894bb7
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,7 @@
+version=3
+
+# Uncomment to find new files on Github
+#  - when using releases:
+https://github.com/HenrikBengtsson/PSCBS/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+# if you need to repack and choose +dfsg prefix
+# opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,compress=xz" \

-- 
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