[med-svn] [bioperl] branch master created (now 80f028e)

Wed Jun 29 07:19:48 UTC 2016

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository bioperl.

        at  80f028e   Move packaging from SVN to Git

This branch includes the following new commits:

       new  0966289   [svn-inject] Installing original source of bioperl
       new  68a9868   [svn-inject] Forking bioperl source to Trunk
       new  5ad8c1c   [svn-inject] Applying Debian modifications to trunk
       new  fa71fee   Adding Matt Hope as uploader, using quilt instead of diff.gz
       new  ca45b8a   using quilt instead of diff.gz
       new  36a3945   SVN management
       new  48893a0   using prename instead of rename, which is usually a symlink to prename.
       new  88a1f5f   enabling tests
       new  e79cd7b   adding one suggested dependancy
       new  3207f9a   many other packages provide sequences usable for tests
       new  5f9bb91   Moving Homepage: field out from the package description.
       new  ee30f87   [bioperl]
       new  0ae5899   Updated watch file
       new  09542ae   Disabled the tests, which try to access internet.
       new  0796415   I am fairly happy with the BioPerl package now as it was just successfully passing its run through pbuilder. The following lintian warning remain. If someone has any idea what to do about them ... please go for it.
       new  222f452   I had forgotten about this one in my prior upload.
       new  e97ad10   * debian/control:   - Updated Recommends (libpostscript-textblock-perl won't exist -     the package will be named libpostscript-perl)   - Fields wrapped at around 80 columns   - Added myself to Uploaders * debian/changelog:   - fixing incorrect first line (leading tab)
       new  56425c6   Small cleanups
       new  71f4e69   Adding reference to publication.
       new  bf3e13d   +XS-DM-Upload-Allowed: Yes
       new  9251248   Closing 453923 + other small fixes
       new  2a169ec   Sorry, forgot to commit it. See previous log for details
       new  345bb4b   Fixing case mistake
       new  070c4bc     - fixed Vcs-* fields   - removed XS- from DM-Upload-Allowed
       new  cddc983   * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
       new  8dbdd6c   Work in progress.
       new  f17fb61   Still needs to include Copyright and update Upstream authors
       new  d756fe7   Some more updates in debian/copyright and uploaded
       new  9df1374   Removed MIA maintainer from Uploaders.
       new  1c358c4   Downgraded most recommended package to the lower priority, and converted debian/copyright to a machine-readable format.
       new  7ca61df   Corrected redundant entries in the dependancy fields, improved explanation and fixed typo.
       new  ce5d66a   Uploaded
       new  462f9a3   Updated my email address.
       new  57a480c   Preparing experimental release of a nightly build version (needed for GBrowse).
       new  c83a8ef   Unclean commit that starts to prepare the 1.6.0 release.
       new  e1d6a8a   Updated to detect newer versions.
       new  12e9351   New upstream release
       new  d786481   TODO: run installation interactively and figure out new dependancies.   - fixes Bio::AlignIO::next_aln bug (Closes: #266921)
       new  0c37983   * debian/control:   - fields values rewrapped to easily spot diffs in commit mails
       new  97301f4   dropped B-D-I versioning on perl, since Etch already has a greater version
       new  4a5b4a3     - Standards-Version bumped to 3.8.0:     + debian/README.source added
       new  e21cb0d   Really add the file. D'oh!
       new  49dce51   Beginning to reorganise the dependancies.
       new  1fe4aa5   Sorting out dependancies, reenabling tests, and a bit of cleaning.
       new  e9344e1   Added libxml-libxml-perl, and tested RC3 (all tests passed).
       new  fe626cd   Simplification of build process. Tests disabled and some build-deps removed for experimental upload.
       new  a0a6887   Preparation of the non-experimental update.
       new  243ced1   It was noticed in Ubuntu that 1.6.0-1 actually fails to build from source.
       new  a9153a9   Uploaded after minor correction of the dependancies.
       new  426d798   Removed myself from Uploaders
       new  8988a68   Oops, back to UNRELEASED
       new  ae6efbc   Update adding missing dependancies and metadata for experimental purposes.
       new  a6b346c   Use DEB_MAINTAINER_MODE to run the network tests.
       new  b6d811b   New upstream release in preparation, adding some new dependancies.
       new  1d9c370   Added a dependancy removed by mistake.
       new  757f7b9   Restored other changes that were reverted by inadvertance.
       new  0d6c500   Tested alpha 3 release.
       new  3941228   Version 1.6.1 released this morning, waiting for Perl 5.10.1 to be available in Sid build chroots.
       new  5f1c14f   Last addition to the build-deps (for the tests), spellchecked changelog, and uploaded.
       new  aa12a35   s/Debian-Med/Debian Med
       new  93dfbed   Syntax corrections.
       new  c93b1db   Corrected a syntax error.
       new  b79d2b0   Corrected another syntax error.
       new  f109f12   Fixed a nasty indentation bug.
       new  0ca1e8f   Revert accidental reversion of compatibility change from version 1.6.0-1.
       new  2c8c9ab   Preparing the upload of either a patched version or a new upstream release.
       new  ccc4029   Added contact information for BioPerl from its README file.
       new  32a51ed   Uploaded.
       new  7e1e5a0   Point debian/watch to search.cpan.org.
       new  43bbf0e   New bugtracker for BioPerl at OBF.
       new  a2bc048   Converted to DEP-5 and valdiated with ‘config-edit -application dpkg-copyright -ui none’.
       new  f272f52   Build using dh and overrides.
       new  3726e46   Note about DEB_MAINTAINER_MODE.
       new  21545a1   New upstream release again.
       new  545ec9c   Depend and build-depend on libsort-naturally-perl, recommended in “Build.PL”.
       new  209c1e2   Split into libbio-perl-perl, as discussed with the Debian Perl team.
       new  74f097d   Deleted debian/reference and updated debian/upstream-metadata.yaml.
       new  fd0ef5a   Incremented Standards-Version and modified Vcs-Browser.
       new  445ff79   Removed useless ‘svn’ in the Vcs-Svn URL.
       new  2d096b1   Found public domain work in the debdiff with version 1.6.1.
       new  eef7460   Break and replace bioperl accordingly; Uploaded to NEW.
       new  37a5e7e   Applied patch by Luca Capello, source format 3.0 (quilt)
       new  9743675   Renamed debian/upstream-metadata.yaml to debian/upstream.
       new  6cb5946   debian/upstream: Moved DOI and PMID to the Reference namespace.
       new  88324f6   add patch fix_berkeleydb3_temp_file_creation to fix 661793
       new  ed99b57   change copyright format from DEP5 to new offical v1.0
       new  52bbb17   change standards version to 5.9.3
       new  894de41   add changes info
       new  d29c280   fix email address of changelog
       new  4a29373   fix file access right
       new  1bb03d9   fix perl path in examples
       new  1face8f   fix perl path in examples
       new  91dd1f3   fix wrong path in debian build
       new  d1cd091   Add additional citation data
       new  8e6b4db   add missing dep and switch to sdts 3.9.4
       new  d190da2   fix email
       new  7cbc6f2   New upstream release.
       new  5bd81c4   Adjusted Depends and Recommends (4 additions).
       new  8a43159   Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream.
       new  e6ae921   Use canonical VCS URLs.
       new  ca24d35   Use Debhelper 9.
       new  686c087   bioperl (1.6.920-1) unstable; urgency=low
       new  d2dc88b   Replace and Break grinder, stop replacing and breaking bioperl.
       new  19ca37b   bioperl (1.6.922-1) unstable; urgency=low
       new  adee4bf   bioperl (1.6.923-1) unstable; urgency=medium
       new  72d8b8a   Move debian/upstream to debian/upstream/metadata
       new  9fe0147   bioperl (1.6.924-1) unstable; urgency=medium
       new  a559516   drop perl-modules dependency for perl 5.22 transition
       new  3be09b2   upload for perl 5.22 transition
       new  21b9348   Fix build issue with Perl 5.22 and Standards-Version: 3.9.6
       new  bf617c6   cme fix dpkg-control (Needed several manual postprocessing since cme has the habit to move comments to the end of a section)
       new  f779b9a   Fix FTBFS with Perl 5.24 by applying upstream patch
       new  6cebdbe   Remove unused paragraph in d/copyright and upload to unstable
       new  c325d45   Imported Upstream version 1.6.924
       new  7287f1d   Merge tag 'upstream/1.6.924'
       new  ad0f9cd   Re-add debian/ dir
       new  2d1b19d   Testsuite: autopkgtest-pkg-perl
       new  80f028e   Move packaging from SVN to Git

The 118 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bioperl.git