[med-svn] [bioperl] annotated tag upstream/1.6.924 created (now ef8ad84)
Andreas Tille
tille at debian.org
Wed Jun 29 07:19:59 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag upstream/1.6.924
in repository bioperl.
at ef8ad84 (tag)
tagging c325d45d62b5f3a32edd37ea4e7e67d4ca7d65eb (commit)
tagged by Andreas Tille
on Wed Jun 29 09:11:45 2016 +0200
- Log -----------------------------------------------------------------
Upstream version 1.6.924
Andreas Tille (7):
Applied patch by Luca Capello, source format 3.0 (quilt)
Add additional citation data
Fix build issue with Perl 5.22 and Standards-Version: 3.9.6
cme fix dpkg-control (Needed several manual postprocessing since cme has the habit to move comments to the end of a section)
Fix FTBFS with Perl 5.24 by applying upstream patch
Remove unused paragraph in d/copyright and upload to unstable
Imported Upstream version 1.6.924
Charles Plessy (70):
[svn-inject] Installing original source of bioperl
[svn-inject] Forking bioperl source to Trunk
[svn-inject] Applying Debian modifications to trunk
Adding Matt Hope as uploader, using quilt instead of diff.gz
using quilt instead of diff.gz
SVN management
using prename instead of rename, which is usually a symlink to prename.
enabling tests
adding one suggested dependancy
many other packages provide sequences usable for tests
Moving Homepage: field out from the package description.
Updated watch file
Disabled the tests, which try to access internet.
+XS-DM-Upload-Allowed: Yes
Fixing case mistake
Removed MIA maintainer from Uploaders.
Downgraded most recommended package to the lower priority, and converted debian/copyright to a machine-readable format.
Corrected redundant entries in the dependancy fields, improved explanation and fixed typo.
Updated my email address.
Preparing experimental release of a nightly build version (needed for GBrowse).
Unclean commit that starts to prepare the 1.6.0 release.
Updated to detect newer versions.
Beginning to reorganise the dependancies.
Sorting out dependancies, reenabling tests, and a bit of cleaning.
Added libxml-libxml-perl, and tested RC3 (all tests passed).
Simplification of build process. Tests disabled and some build-deps removed for experimental upload.
Preparation of the non-experimental update.
It was noticed in Ubuntu that 1.6.0-1 actually fails to build from source.
Uploaded after minor correction of the dependancies.
Update adding missing dependancies and metadata for experimental purposes.
Use DEB_MAINTAINER_MODE to run the network tests.
New upstream release in preparation, adding some new dependancies.
Added a dependancy removed by mistake.
Restored other changes that were reverted by inadvertance.
Tested alpha 3 release.
Version 1.6.1 released this morning, waiting for Perl 5.10.1 to be
Last addition to the build-deps (for the tests), spellchecked changelog, and uploaded.
Syntax corrections.
Corrected a syntax error.
Corrected another syntax error.
Fixed a nasty indentation bug.
Revert accidental reversion of compatibility change from version 1.6.0-1.
Preparing the upload of either a patched version or a new upstream release.
Added contact information for BioPerl from its README file.
Uploaded.
Point debian/watch to search.cpan.org.
New bugtracker for BioPerl at OBF.
Converted to DEP-5 and valdiated with ‘config-edit -application dpkg-copyright -ui none’.
Build using dh and overrides.
Note about DEB_MAINTAINER_MODE.
New upstream release again.
Depend and build-depend on libsort-naturally-perl, recommended in “Build.PL”.
Split into libbio-perl-perl, as discussed with the Debian Perl team.
Deleted debian/reference and updated debian/upstream-metadata.yaml.
Incremented Standards-Version and modified Vcs-Browser.
Removed useless ‘svn’ in the Vcs-Svn URL.
Found public domain work in the debdiff with version 1.6.1.
Break and replace bioperl accordingly; Uploaded to NEW.
Renamed debian/upstream-metadata.yaml to debian/upstream.
debian/upstream: Moved DOI and PMID to the Reference namespace.
New upstream release.
Adjusted Depends and Recommends (4 additions).
Removed patch ‘fix_berkeleydb3_temp_file_creation’ applied upstream.
Use canonical VCS URLs.
Use Debhelper 9.
bioperl (1.6.920-1) unstable; urgency=low
Replace and Break grinder, stop replacing and breaking bioperl.
bioperl (1.6.922-1) unstable; urgency=low
bioperl (1.6.923-1) unstable; urgency=medium
bioperl (1.6.924-1) unstable; urgency=medium
David Paleino (13):
* debian/control:
Closing 453923 + other small fixes
Sorry, forgot to commit it. See previous log for details
- fixed Vcs-* fields
* Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed
New upstream release
TODO: run installation interactively and figure out new dependancies.
* debian/control:
dropped B-D-I versioning on perl, since Etch already has a greater
- Standards-Version bumped to 3.8.0:
Really add the file. D'oh!
Removed myself from Uploaders
Oops, back to UNRELEASED
James McCoy (1):
Move debian/upstream to debian/upstream/metadata
Nelson A. de Oliveira (6):
Small cleanups
Work in progress.
Still needs to include Copyright and update Upstream authors
Some more updates in debian/copyright and uploaded
Uploaded
s/Debian-Med/Debian Med
Olivier Sallou (13):
add patch fix_berkeleydb3_temp_file_creation to fix 661793
change copyright format from DEP5 to new offical v1.0
change standards version to 5.9.3
add changes info
fix email address of changelog
fix file access right
fix perl path in examples
fix perl path in examples
fix wrong path in debian build
add missing dep and switch to sdts 3.9.4
fix email
drop perl-modules dependency for perl 5.22 transition
upload for perl 5.22 transition
Steffen Moeller (4):
[bioperl]
I am fairly happy with the BioPerl package now as it was just successfully passing
I had forgotten about this one in my prior upload.
Adding reference to publication.
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