[med-svn] [gbrowse] branch master created (now 1796542)
Andreas Tille
tille at debian.org
Wed Jun 29 07:40:28 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository gbrowse.
at 1796542 Moved packaging from SVN to Git (+ cme fix dpkg-control)
This branch includes the following new commits:
new de50419 [svn-inject] Installing original source of gbrowse
new 05b7109 [svn-inject] Forking gbrowse source to Trunk
new 01a1861 [svn-inject] Applying Debian modifications to trunk
new 6102bac Cleaning; adding SVN info.
new c7c4806 partially solves the hardocding to $(CURDIR)/debian/gbrowse in some cgi scripts.
new d8119bd Enhancements suggested by Christian Perrier
new 50e682a fixes a bug in blast2gff.pl
new a1ef808 Ugly... need to be changed before uploading
new 067d2ef partial cleaning
new d00eb6e Adding programs in /usr/bin
new af8781f adding libtext-shellwords-perl to the dependancies
new 2f9780f Moving Homepage: field out from the package description.
new 94bf1eb Removing obsolete XS- prefix
new 94455d9 +XS-DM-Upload-Allowed: Yes
new b08dfce Fixing case mistake
new 95e6b83 * Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed * Added ?rev=0&sc=0 to Vcs-Browser fields * Sanitized Vcs-* fields
new 64bf252 Updating Standards-Version to 3.7.3
new a68f343 removed boilerplate *.ex and *.EX files
new ab2842b Updated my email address.
new 3a5ec7b New upstream release.
new cf0b68f Work in progress. Upstream will modify the build system to ease our work. (For the moment, some paths are hardcoded to the $(TMP) directory when make install is called).
new bc06b2e New upstream prerelease that eases Debian package building.
new 4ced4c7 s/Debian-Med/Debian Med
new 1e214d9 Updated to Gbrowse 1.70, and added debian/README.source.
new 7dc0ea7 Partial switch to Debhelper 7’s dh. Removed obsolete line in README.
new 4f3a34d set gbrowse2
new 5c1f8ee update comment
new 189f657 update package name in files
new 4bff57e dh_bugfile depend
new 50b03df dh_bugfile depend
new 432f15a move man to debian place
new cd338c5 update debhelper version
new 1c739ec change man loc
new 856fb24 change man loc
new 36617d2 Lets focus on the important stuff with a simpler debian/rules file ...
new 255710c update rules
new d560450 update man page management
new 46c582c remove some linian warns
new 6414681 remove some linian warns
new d0cea31 remove some linian warns
new 0467f35 remove some linian warns
new 793c0a8 add some man pages
new 9e54a73 add some man pages
new a36135e man pages updates
new 3f921ed man pages updates
new 05c7a8a man pages updates
new 99b9b4c Corrected Vcs-Browser URL.
new 89570f0 separate databases in a data package
new 4678691 remove lintian warn
new f40950b Make sure we do not try to install non-existing man pages; move binaries from /bin to /usr/bin
new d30b45d move bin in usr/bin
new f88e2d8 move bin in usr/bin
new fd8a8a8 update lintian+patch
new 8257804 wrong override name
new fab04c7 update lintian overrides
new 99cf72d First copyright review for Gbrowse. Please proofread me !
new 191ccc8 perl-depends does not seem necessary to build the Gbrowse package.
new 41a0f9e use javascript libs in debian sid
new fcc6fc2 update postinst with bin path
new c1aabb7 remove perl extension call
new bf97677 set correct rights to sqlite database
new 82de373 update scripts to accept arguments
new 638bba8 updates to keep user database in debian package
new 9f06cd3 remove contribs for licensing issues, update scripts to support arguments, update path to gbrowse instead of gbrowse2
new 54c8c47 add comments
new 85c5bcb Make sure get-orig-source target will really work
new 2d7a191 add new man pages in debian dir and remove them from patch
new 414f35c separate calign lib as a package as it not a requirement
new 8caefee move all arch perl to share instead of lib
new 3db2e47 add depends
new 2d7f90b add depends
new babbf7b add suggests
new cbb3513 add suggests
new f34e4fb Underline the repacking by adding ‘~dfsg’ to the version number.
new 0d6c086 Use bzip2 compression for source and binary packages.
new b62ac7b update default file for debian install
new c097973 supress interactive registration from build
new 4bfa8f1 add some info
new 4b3a1e6 update index.html page to fix broken links
new 1e5c882 add info in index.html
new ff1dc87 Removed duplicated libterm-readkey-perl in Depends field.
new 085c01b add auto test step
new 4b60b9f Swap the Gd::Gd2 alternatives, otherwise sbuild fails when using apt-get as a resolver.
new b3a3852 Update MANIFEST according to our changes.
new 0d4c6d5 Factorise options of Build.PL in GBROWSE_BUILD_OPTIONS.
new ce7feb4 ${shlibs:Depends} is not needed in architecture-independant packages.
new 876f112 Distribute the symbolic link /etc/apache2/conf.d/gbrowse directly in the package.
new 78a7d42 /etc/apache2/conf.d/gbrowse now belongs to the package itself.
new 58a21fe Suppress one non-essential message.
new fd3728d Deleted redundant rm command.
new c0b66be Remove debconf as we are not using it (yet ?).
new 2373e5c Simplified README.source.
new b37341a Split patch in smaller units according to their purpose.
new 971f641 Solved by debian/patches/manpages.patch
new ec8fd2c Removed part of the patch that adds an empty line.
new 9fa6b23 Normalised indentation in maintainer scripts.
new 8c2c466 Removed build-dependancy on quilt, not needed with format 3.0 (quilt).
new e3ff7c4 Create the needed directories through dh_installdirs, that is ran before dh_auto_install.
new 15f2183 Modify etc/default/gbrowse-slave through a patch, to be consistent with /etc/init.d/gbrowse-slave.
new 6abefa0 Using Debhelper compatibility level, where “dh_auto_configure -- $(GBROWSE_BUILD_OPTIONS)” works.
new 208e516 Deleted the dh_auto_test, that became unnecessary.
new c751020 Correct obsolete-relation-form-in-source.
new f5b2eca etc/default/gbrowse-slave does not need to be executable (nor to be a script either).
new 3eb7f97 Patch refreshed with “quilt refresh”.
new bba164b Configure to skip registration.
new 817c2be Removed another override that became unnecessary.
new 5c1ddc0 Activate configuration files by suppressing their .new suffix.
new d4ae4f6 Link to the JavaScript libraries provided through Debian.
new 31505a7 Disabling call to /usr/bin/gbrowse_metadb_config.
new e78d4c9 move db related to /var/lib, restart slave process for gbrowse-data install
new 7b5b48f remove lintian warnings
new a0d23aa fix dual install error on sessions
new e27bf4f Recent patch from Olivier made this override unnecessary.
new 91190b9 Remove /var/lib/gbrowse/databases on purge.
new 4ce5611 Converted to latest DEP-5 format.
new 6975b6a Added myself to Uploaders, updated Homepage.
new e4caec6 It was wrong to remove /var/lib/gbrowse/databases/ as some files there belong to gbrowse-data.
new 735a570 Depend and Build-Depend on libhttp-daemon-perl, as recent libwww-perl do not provide HTTP::Daemon anymore.
new 2259e35 Uploaded gbrowse_2.26~dfsg-1_amd64.changes.
new 52b86c9 Inaugurate work on 2.26~dfsg-2, a team upload to address #624130.
new feb4460 debian/{gbrowse.dirs,rules}: Tweak to avoid errors when building just the architecture-dependent gbrowse-calign package. (Closes: #624130.)
new d9b509a Finalize gbrowse 2.26~dfsg-2 for upload to unstable, where -1 accidentally landed.
new 1a0d525 debian/control: Temporarily add myself to uploaders to placate dak.
new 83627ad Prepare gbrowse 2.26~dfsg-3 with no real changes from -2, whose uploads I botched. (It's been a long day.)
new 474a2cf new upstream version 2.38 plus patch for defaults script
new d380f46 add comment on change
new e0402cd Moved chado and gbrowse directories into gmod subdir.
new aa97277 new upstream version
new 6bc3198 add patch in example conf files
new efe202f delete only on purge
new 0557933 add warning on an upgrade issue
new 0b04dc2 skip some tests causing random buildd failures
new ee4afd5 update standards version
new 75a1184 new upstream release, fix patch to new upstram values
new 0eb627e remove fuzz from patch
new a0e9fc1 update copyright format
new cd737bd fix missing description
new 7b34140 fix spelling error
new 068a1e0 fix init provides name
new 080e8e8 redirect update-rc to dev/null
new a912a47 typo update
new 1e1dadf remove empty dir
new ba0fde7 fix pod2man and what-is errors
new b633074 fix spelling errors
new 33c5d5e add missing man pages
new 12d636c fix typo
new 5506fac remove empty dir
new 55d0ad4 fix manpage name, add override
new 5663345 fix pod2man for DataSource
new e728865 remove empty dir
new edaf18d remove empty dir
new fcbd230 fix data path
new 52d9d22 fix URL for simple case
new fd70a4c update with new upstream release
new b996edc Updated VCS URLs.
new d3e5618 Removed redundant libbio-graphics-perl entry.
new b2ead5a upload pending due to upstream test issues with bio::graphics 2.26
new 3d2c0c7 Add new env variable persistent to build and update repository rights according to the new variable
new c26256a fix version name
new 02d34aa remove dual declaration of libbio-graphics-perl
new 6f1abbe add info about make test failure
new 396c7d5 add patch to remove some testing due to upstream bug
new e3d2004 new upstream release
new 1d7ae66 change email to debian one
new c28f25a Added citation of the day (for yesterday)
new 1b1287f prepare new upstream release
new 08568ae increase deps version
new f100258 update changelog, refresh patch
new 2adb97c add patch for new release
new d413909 add missing man page for new release
new 5442dc5 Set tests back again with upstream bug fix
new 9899d4f remove unexistant package name
new db280d2 update dfsg name
new b61d528 fix patch error
new d991b84 fix dep3 headers
new a564d53 switch to standards 3.9.3
new ece31fa ready for upload
new 26ac06b New upstream release control and patches updates (offset updates)
new 0aa6d50 fix version name
new c3e0afa fix version name
new d08787e upload v2.54
new 8b7ad7c apache 2.4 transition
new 8751ac0 Move debian/upstream to debian/upstream/metadata
new a4adbe4 Don't hardcode /usr/lib/perl5.
new 2d11f0f Drop bzip2 compression of the binary packages (xz is now the default).
new 6125e4f Normalised debian/copyright with config-model-edit.
new d74a6fb Normalised debian/control with config-model-edit.
new 5507209 follow policy rules and rmeove lintian warnings
new 7241c1e upload patched release 2.54+dfsg-3
new f17d835 fix perl 5.22 transition adding libmodule-build-perl build dep, closing 788642
new ce7422f add libcgi-pm-perl dep for perl 5.22 transition, closes 789734
new 2413e37 switch to standards 3.9.6
new 0c4209c Use and build-depend on file-rename directly.
new 78156ec Echo hint to switch to Files-Excluded for next upstream version
new 2d2f9bc the package providing the executable file-rename is actually rename
new e9dffd6 Enable arch independent build by ensuring that target directories are existing
new 06c8520 Fix several lintian issues and push team upload
new 271f860 set executable flag
new 4299a4d Imported Upstream version 2.54+dfsg
new c507294 Merge tag 'upstream/2.54+dfsg'
new 55869b4 Re-add debian/ dir
new 1796542 Moved packaging from SVN to Git (+ cme fix dpkg-control)
The 202 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
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