[med-svn] [gbrowse] annotated tag upstream/2.54+dfsg created (now 5fa2307)
Andreas Tille
tille at debian.org
Wed Jun 29 07:40:38 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to annotated tag upstream/2.54+dfsg
in repository gbrowse.
at 5fa2307 (tag)
tagging 4299a4d329de017a22d9f13321e053613c95eb6f (commit)
tagged by Andreas Tille
on Wed Jun 29 09:35:43 2016 +0200
- Log -----------------------------------------------------------------
Upstream version 2.54+dfsg
Aaron M. Ucko (5):
Inaugurate work on 2.26~dfsg-2, a team upload to address #624130.
debian/{gbrowse.dirs,rules}: Tweak to avoid errors when building just
Finalize gbrowse 2.26~dfsg-2 for upload to unstable, where -1 accidentally
debian/control: Temporarily add myself to uploaders to placate dak.
Prepare gbrowse 2.26~dfsg-3 with no real changes from -2, whose
Andreas Tille (10):
Lets focus on the important stuff with a simpler debian/rules file ...
Make sure we do not try to install non-existing man pages; move binaries from /bin to /usr/bin
Make sure get-orig-source target will really work
Added citation of the day (for yesterday)
Echo hint to switch to Files-Excluded for next upstream version
the package providing the executable file-rename is actually rename
Enable arch independent build by ensuring that target directories are existing
Fix several lintian issues and push team upload
set executable flag
Imported Upstream version 2.54+dfsg
Charles Plessy (68):
[svn-inject] Installing original source of gbrowse
[svn-inject] Forking gbrowse source to Trunk
[svn-inject] Applying Debian modifications to trunk
Cleaning; adding SVN info.
partially solves the hardocding to $(CURDIR)/debian/gbrowse in some cgi scripts.
Enhancements suggested by Christian Perrier
fixes a bug in blast2gff.pl
Ugly... need to be changed before uploading
partial cleaning
Adding programs in /usr/bin
adding libtext-shellwords-perl to the dependancies
Moving Homepage: field out from the package description.
Removing obsolete XS- prefix
+XS-DM-Upload-Allowed: Yes
Fixing case mistake
Updated my email address.
New upstream release.
Work in progress. Upstream will modify the build system to ease our work.
New upstream prerelease that eases Debian package building.
Updated to Gbrowse 1.70, and added debian/README.source.
Partial switch to Debhelper 7’s dh. Removed obsolete line in README.
Corrected Vcs-Browser URL.
First copyright review for Gbrowse. Please proofread me !
perl-depends does not seem necessary to build the Gbrowse package.
Underline the repacking by adding ‘~dfsg’ to the version number.
Use bzip2 compression for source and binary packages.
Removed duplicated libterm-readkey-perl in Depends field.
Swap the Gd::Gd2 alternatives, otherwise sbuild fails when using apt-get as a resolver.
Update MANIFEST according to our changes.
Factorise options of Build.PL in GBROWSE_BUILD_OPTIONS.
${shlibs:Depends} is not needed in architecture-independant packages.
Distribute the symbolic link /etc/apache2/conf.d/gbrowse directly in the package.
/etc/apache2/conf.d/gbrowse now belongs to the package itself.
Suppress one non-essential message.
Deleted redundant rm command.
Remove debconf as we are not using it (yet ?).
Simplified README.source.
Split patch in smaller units according to their purpose.
Solved by debian/patches/manpages.patch
Removed part of the patch that adds an empty line.
Normalised indentation in maintainer scripts.
Removed build-dependancy on quilt, not needed with format 3.0 (quilt).
Create the needed directories through dh_installdirs, that is ran before dh_auto_install.
Modify etc/default/gbrowse-slave through a patch, to be consistent with /etc/init.d/gbrowse-slave.
Using Debhelper compatibility level, where “dh_auto_configure -- $(GBROWSE_BUILD_OPTIONS)” works.
Deleted the dh_auto_test, that became unnecessary.
Correct obsolete-relation-form-in-source.
etc/default/gbrowse-slave does not need to be executable (nor to be a script either).
Patch refreshed with “quilt refresh”.
Configure to skip registration.
Removed another override that became unnecessary.
Activate configuration files by suppressing their .new suffix.
Link to the JavaScript libraries provided through Debian.
Disabling call to /usr/bin/gbrowse_metadb_config.
Recent patch from Olivier made this override unnecessary.
Remove /var/lib/gbrowse/databases on purge.
Converted to latest DEP-5 format.
Added myself to Uploaders, updated Homepage.
It was wrong to remove /var/lib/gbrowse/databases/ as some files there belong to gbrowse-data.
Depend and Build-Depend on libhttp-daemon-perl, as recent libwww-perl do not provide HTTP::Daemon anymore.
Uploaded gbrowse_2.26~dfsg-1_amd64.changes.
Updated VCS URLs.
Removed redundant libbio-graphics-perl entry.
Don't hardcode /usr/lib/perl5.
Drop bzip2 compression of the binary packages (xz is now the default).
Normalised debian/copyright with config-model-edit.
Normalised debian/control with config-model-edit.
Use and build-depend on file-rename directly.
David Paleino (2):
* Using DM-Upload-Allowed instead of XS-DM-Upload-Allowed
Updating Standards-Version to 3.7.3
James McCoy (1):
Move debian/upstream to debian/upstream/metadata
Morten Kjeldgaard (1):
removed boilerplate *.ex and *.EX files
Nelson A. de Oliveira (1):
s/Debian-Med/Debian Med
Olivier Sallou (110):
set gbrowse2
update comment
update package name in files
dh_bugfile depend
dh_bugfile depend
move man to debian place
update debhelper version
change man loc
change man loc
update rules
update man page management
remove some linian warns
remove some linian warns
remove some linian warns
remove some linian warns
add some man pages
add some man pages
man pages updates
man pages updates
man pages updates
separate databases in a data package
remove lintian warn
move bin in usr/bin
move bin in usr/bin
update lintian+patch
wrong override name
update lintian overrides
use javascript libs in debian sid
update postinst with bin path
remove perl extension call
set correct rights to sqlite database
update scripts to accept arguments
updates to keep user database in debian package
remove contribs for licensing issues, update scripts to support arguments, update path to gbrowse instead of gbrowse2
add comments
add new man pages in debian dir and remove them from patch
separate calign lib as a package as it not a requirement
move all arch perl to share instead of lib
add depends
add depends
add suggests
add suggests
update default file for debian install
supress interactive registration from build
add some info
update index.html page to fix broken links
add info in index.html
add auto test step
move db related to /var/lib, restart slave process for gbrowse-data install
remove lintian warnings
fix dual install error on sessions
new upstream version 2.38 plus patch for defaults script
add comment on change
new upstream version
add patch in example conf files
delete only on purge
add warning on an upgrade issue
skip some tests causing random buildd failures
update standards version
new upstream release, fix patch to new upstram values
remove fuzz from patch
update copyright format
fix missing description
fix spelling error
fix init provides name
redirect update-rc to dev/null
typo update
remove empty dir
fix pod2man and what-is errors
fix spelling errors
add missing man pages
fix typo
remove empty dir
fix manpage name, add override
fix pod2man for DataSource
remove empty dir
remove empty dir
fix data path
fix URL for simple case
update with new upstream release
upload pending due to upstream test issues with bio::graphics 2.26
Add new env variable persistent to build and update repository rights according to the new variable
fix version name
remove dual declaration of libbio-graphics-perl
add info about make test failure
add patch to remove some testing due to upstream bug
new upstream release
change email to debian one
prepare new upstream release
increase deps version
update changelog, refresh patch
add patch for new release
add missing man page for new release
Set tests back again with upstream bug fix
remove unexistant package name
update dfsg name
fix patch error
fix dep3 headers
switch to standards 3.9.3
ready for upload
New upstream release control and patches updates (offset updates)
fix version name
fix version name
upload v2.54
apache 2.4 transition
follow policy rules and rmeove lintian warnings
upload patched release 2.54+dfsg-3
fix perl 5.22 transition adding libmodule-build-perl build dep, closing 788642
add libcgi-pm-perl dep for perl 5.22 transition, closes 789734
switch to standards 3.9.6
Steffen Moeller (1):
Moved chado and gbrowse directories into gmod subdir.
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