[med-svn] [dazzdb] branch master updated (080d83f -> 73040d5)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository dazzdb.

      from  080d83f   Use exact license wording from README
       new  f9c46a1   Imported Upstream version 1.0+20160930
       new  e72c26a   Merge tag 'upstream/1.0+20160930'
       new  baaf30b   Update name of README
       new  d12b450   Update Standards-Version
       new  43605b3   Use encrypted protocols for VCS URLs
       new  d4943ec   Update email address and copyright years
       new  8c52c1a   Drop manpages and refer to README for program documentation
       new  383b3ff   Update patches
       new  56f9a34   Remove unnecessary lines from d/rules
       new  73040d5   releasing package dazzdb version 1.0+20160930-1

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Catrack.c                                          |  57 +--
 DAM2fasta.c                                        |  60 +--
 DB.c                                               | 284 ++++++++---
 DB.h                                               |  78 ++-
 DB2fasta.c                                         | 108 ++--
 DB2quiva.c                                         |  97 ++--
 DBshow.c => DBdump.c                               | 504 ++++++++++++-------
 DBdust.c                                           |  39 +-
 DBrm.c                                             |  37 --
 DBshow.c                                           |  55 +--
 DBsplit.c                                          |  68 +--
 DBstats.c                                          | 178 ++++---
 DBupgrade.Dec.31.2014.c                            | 115 -----
 DBupgrade.Sep.25.2014.c                            | 125 -----
 DUSTupgrade.Jan.1.2015.c                           | 117 -----
 LICENSE                                            |  34 ++
 Makefile                                           |  28 +-
 QV.c                                               |  93 ++--
 QV.h                                               |  55 +--
 README                                             | 442 -----------------
 README.md                                          | 501 +++++++++++++++++++
 debian/changelog                                   |  11 +
 debian/control                                     |   9 +-
 debian/copyright                                   |   4 +-
 debian/docs                                        |   2 +-
 debian/man/Catrack.1.md                            |  22 -
 debian/man/DAM2fasta.1.md                          |  25 -
 debian/man/DB2fasta.1.md                           |  27 -
 debian/man/DB2quiva.1.md                           |  25 -
 debian/man/DBdust.1.md                             |  34 --
 debian/man/DBrm.1.md                               |  21 -
 debian/man/DBshow.1.md                             |  48 --
 debian/man/DBsplit.1.md                            |  30 --
 debian/man/DBstats.1.md                            |  25 -
 debian/man/Makefile                                |  12 -
 debian/man/dazzdb.1                                |  11 +
 debian/man/dsimulator.1.md                         |  39 --
 debian/man/fasta2DAM.1.md                          |  24 -
 debian/man/fasta2DB.1.md                           |  28 --
 debian/man/quiva2DB.1.md                           |  25 -
 .../patches/{append-cflags => append-cflags.patch} |  10 +-
 debian/patches/compiler-flags.patch                |  65 +++
 debian/patches/{destdir => destdir.patch}          |   4 +-
 debian/patches/ldflags                             |  75 ---
 .../{rename-simulator => rename-simulator.patch}   |  30 +-
 debian/patches/series                              |   8 +-
 debian/rules                                       |  18 +-
 fasta2DAM.c                                        | 477 +++++++++++++-----
 fasta2DB.c                                         | 290 ++++++-----
 quiva2DB.c                                         | 546 +++++++++++++--------
 rangen.c                                           | 182 +++++++
 simulator.c                                        | 473 +++++++++++-------
 52 files changed, 2905 insertions(+), 2770 deletions(-)
 copy DBshow.c => DBdump.c (52%)
 delete mode 100644 DBupgrade.Dec.31.2014.c
 delete mode 100644 DBupgrade.Sep.25.2014.c
 delete mode 100644 DUSTupgrade.Jan.1.2015.c
 create mode 100644 LICENSE
 delete mode 100644 README
 create mode 100644 README.md
 delete mode 100644 debian/man/Catrack.1.md
 delete mode 100644 debian/man/DAM2fasta.1.md
 delete mode 100644 debian/man/DB2fasta.1.md
 delete mode 100644 debian/man/DB2quiva.1.md
 delete mode 100644 debian/man/DBdust.1.md
 delete mode 100644 debian/man/DBrm.1.md
 delete mode 100644 debian/man/DBshow.1.md
 delete mode 100644 debian/man/DBsplit.1.md
 delete mode 100644 debian/man/DBstats.1.md
 delete mode 100644 debian/man/Makefile
 create mode 100644 debian/man/dazzdb.1
 delete mode 100644 debian/man/dsimulator.1.md
 delete mode 100644 debian/man/fasta2DAM.1.md
 delete mode 100644 debian/man/fasta2DB.1.md
 delete mode 100644 debian/man/quiva2DB.1.md
 rename debian/patches/{append-cflags => append-cflags.patch} (56%)
 create mode 100644 debian/patches/compiler-flags.patch
 rename debian/patches/{destdir => destdir.patch} (89%)
 delete mode 100644 debian/patches/ldflags
 rename debian/patches/{rename-simulator => rename-simulator.patch} (53%)
 create mode 100644 rangen.c

-- 
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