[med-svn] [emperor] 13/15: Merge tag 'upstream/0.9.3+dfsg'
Afif Elghraoui
afif at moszumanska.debian.org
Thu Oct 13 06:22:57 UTC 2016
This is an automated email from the git hooks/post-receive script.
afif pushed a commit to branch master
in repository emperor.
commit e5755c43a54b023052cb313eb357e4d84c3f9c0a
Merge: ed7d170 da2580e
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Wed Oct 12 23:13:13 2016 -0700
Merge tag 'upstream/0.9.3+dfsg'
Upstream version 0.9.3+dfsg
.gitignore | 42 +
.travis.yml | 7 +
ChangeLog.md | 90 +
INSTALL.md | 28 +
LICENSE.md | 223 +
MANIFEST.in | 15 +
README.md | 34 +
doc/description_index.html | 209 +
doc/img/axes_menu.png | Bin 0 -> 16003 bytes
doc/img/colors_menu.png | Bin 0 -> 16257 bytes
doc/img/description_1.png | Bin 0 -> 66096 bytes
doc/img/emperor_heading.png | Bin 0 -> 12582 bytes
doc/img/favicon.ico | Bin 0 -> 5558 bytes
doc/img/key_menu.png | Bin 0 -> 17838 bytes
doc/img/labels_menu.png | Bin 0 -> 19279 bytes
doc/img/options_menu.png | Bin 0 -> 15108 bytes
doc/img/parallel_plots.png | Bin 0 -> 208007 bytes
doc/img/sample_1.png | Bin 0 -> 78421 bytes
doc/img/scaling_menu.png | Bin 0 -> 21444 bytes
doc/img/tutorial/1.png | Bin 0 -> 134941 bytes
doc/img/tutorial/10.png | Bin 0 -> 137743 bytes
doc/img/tutorial/11.png | Bin 0 -> 125936 bytes
doc/img/tutorial/2.png | Bin 0 -> 104168 bytes
doc/img/tutorial/6.png | Bin 0 -> 108753 bytes
doc/img/tutorial/capture_2.png | Bin 0 -> 100097 bytes
doc/img/tutorial/exes.png | Bin 0 -> 102868 bytes
doc/img/tutorial/rotating_1.png | Bin 0 -> 148230 bytes
doc/img/tutorial/rotating_2.png | Bin 0 -> 156729 bytes
doc/img/tutorial/treta.png | Bin 0 -> 191814 bytes
doc/img/view_menu.png | Bin 0 -> 20196 bytes
doc/img/visibility_menu.png | Bin 0 -> 27290 bytes
doc/index.html | 178 +
doc/installation_index.html | 202 +
doc/tutorial_index.html | 245 +
emperor/__init__.py | 13 +
emperor/biplots.py | 110 +
emperor/filter.py | 72 +
emperor/format.py | 723 +
emperor/pycogent_backports/__init__.py | 12 +
emperor/pycogent_backports/procrustes.py | 157 +
emperor/qiime_backports/__init__.py | 13 +
emperor/qiime_backports/biplots.py | 55 +
emperor/qiime_backports/filter.py | 120 +
emperor/qiime_backports/format.py | 40 +
emperor/qiime_backports/make_3d_plots.py | 67 +
emperor/qiime_backports/parse.py | 270 +
emperor/qiime_backports/util.py | 423 +
emperor/sort.py | 87 +
emperor/support_files/css/colorPicker.css | 31 +
emperor/support_files/css/d3.parcoords.css | 40 +
.../css/images/ui-bg_flat_0_aaaaaa_40x100.png | Bin 0 -> 180 bytes
.../css/images/ui-bg_flat_75_ffffff_40x100.png | Bin 0 -> 178 bytes
.../css/images/ui-bg_glass_55_fbf9ee_1x400.png | Bin 0 -> 120 bytes
.../css/images/ui-bg_glass_65_ffffff_1x400.png | Bin 0 -> 105 bytes
.../css/images/ui-bg_glass_75_dadada_1x400.png | Bin 0 -> 111 bytes
.../css/images/ui-bg_glass_75_e6e6e6_1x400.png | Bin 0 -> 110 bytes
.../css/images/ui-bg_glass_95_fef1ec_1x400.png | Bin 0 -> 119 bytes
.../ui-bg_highlight-soft_75_cccccc_1x100.png | Bin 0 -> 101 bytes
.../css/images/ui-icons_222222_256x240.png | Bin 0 -> 4369 bytes
.../css/images/ui-icons_2e83ff_256x240.png | Bin 0 -> 4369 bytes
.../css/images/ui-icons_454545_256x240.png | Bin 0 -> 4369 bytes
.../css/images/ui-icons_888888_256x240.png | Bin 0 -> 4369 bytes
.../css/images/ui-icons_cd0a0a_256x240.png | Bin 0 -> 4369 bytes
.../support_files/css/jquery-ui-1.8.16.custom.css | 568 +
emperor/support_files/css/jquery-ui2.css | 567 +
emperor/support_files/css/spectrum.css | 408 +
emperor/support_files/emperor/css/emperor.css | 284 +
emperor/support_files/emperor/js/emperor.js | 2430 ++
emperor/support_files/img/emperor.png | Bin 0 -> 8747 bytes
emperor/support_files/img/favicon.ico | Bin 0 -> 5558 bytes
emperor/support_files/img/pause.png | Bin 0 -> 2919 bytes
emperor/support_files/img/play.png | Bin 0 -> 2946 bytes
emperor/support_files/img/reset.png | Bin 0 -> 2965 bytes
emperor/support_files/js/FileSaver.min.js | 2 +
emperor/support_files/js/THREEx.screenshot.js | 130 +
emperor/support_files/js/Three.js | 37637 +++++++++++++++++++
emperor/support_files/js/d3.parcoords.js | 568 +
emperor/support_files/js/d3.v3.min.js | 5 +
emperor/support_files/js/jquery-1.7.1.min.js | 4 +
.../js/jquery-ui-1.8.17.custom.min.js | 356 +
emperor/support_files/js/jquery.colorPicker.js | 328 +
emperor/support_files/js/js/AudioObject.js | 172 +
emperor/support_files/js/js/Car.js | 364 +
emperor/support_files/js/js/DAT.GUI.min.js | 53 +
emperor/support_files/js/js/Detector.js | 58 +
emperor/support_files/js/js/ImprovedNoise.js | 71 +
emperor/support_files/js/js/PRNG.js | 11 +
.../support_files/js/js/RequestAnimationFrame.js | 22 +
emperor/support_files/js/js/ShaderExtras.js | 1779 +
emperor/support_files/js/js/ShaderSkin.js | 752 +
emperor/support_files/js/js/ShaderTerrain.js | 306 +
emperor/support_files/js/js/SimplexNoise.js | 316 +
emperor/support_files/js/js/Sparks.js | 832 +
emperor/support_files/js/js/Stats.js | 8 +
emperor/support_files/js/js/Tween.js | 13 +
emperor/support_files/js/js/ctm/CTMLoader.js | 821 +
emperor/support_files/js/js/ctm/CTMWorker.js | 19 +
emperor/support_files/js/js/ctm/ctm.js | 626 +
.../support_files/js/js/ctm/license/OpenCTM.txt | 20 +
.../support_files/js/js/ctm/license/js-lzma.txt | 19 +
.../support_files/js/js/ctm/license/js-openctm.txt | 19 +
emperor/support_files/js/js/ctm/lzma.js | 510 +
.../js/js/postprocessing/BloomPass.js | 100 +
.../js/js/postprocessing/DotScreenPass.js | 52 +
.../js/js/postprocessing/EffectComposer.js | 136 +
.../support_files/js/js/postprocessing/FilmPass.js | 51 +
.../support_files/js/js/postprocessing/MaskPass.js | 86 +
.../js/js/postprocessing/RenderPass.js | 51 +
.../support_files/js/js/postprocessing/SavePass.js | 52 +
.../js/js/postprocessing/ShaderPass.js | 51 +
.../js/js/postprocessing/TexturePass.js | 37 +
emperor/support_files/js/specifications.txt | 1 +
emperor/support_files/js/spectrum.js | 1566 +
emperor/util.py | 488 +
images/emperor-logos.ai | 1197 +
scripts/make_emperor.py | 627 +
setup.py | 61 +
tests/all_tests.py | 183 +
.../scripts_test_data/make_emperor/Fasting_Map.txt | 11 +
.../make_emperor/Fasting_Map_modified.txt | 11 +
tests/scripts_test_data/make_emperor/biplot.txt | 4 +
.../pcoa_unweighted_unifrac_rarefaction_110_0.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_1.txt | 14 +
.../scripts_test_data/make_emperor/makefolders.sh | 10 +
.../make_emperor/otu_table_L3.txt | 9 +
.../make_emperor/unweighted_unifrac_pc.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_0.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_1.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_2.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_3.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_4.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_5.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_6.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_7.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_8.txt | 14 +
.../pcoa_unweighted_unifrac_rarefaction_110_9.txt | 14 +
tests/test_biplots.py | 243 +
tests/test_filter.py | 91 +
tests/test_format.py | 1516 +
tests/test_pycogent_backports/test_procrustes.py | 139 +
tests/test_qiime_backports/test_biplots.py | 108 +
tests/test_qiime_backports/test_filter.py | 130 +
tests/test_qiime_backports/test_format.py | 44 +
tests/test_qiime_backports/test_make_3d_plots.py | 104 +
tests/test_qiime_backports/test_parse.py | 390 +
tests/test_qiime_backports/test_util.py | 543 +
tests/test_sort.py | 235 +
tests/test_util.py | 501 +
148 files changed, 62594 insertions(+)
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