[med-svn] [harvest-tools] branch upstream updated (ef170d9 -> a2f141c)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository harvest-tools.

      from  ef170d9   Imported Upstream version 1.2
       new  a2f141c   New upstream version 1.3

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 INSTALL.txt                       |  38 +++++--
 Makefile.in                       |   6 +-
 README.md                         |  18 ++--
 configure.ac                      |   2 +-
 src/harvest/AnnotationList.cpp    |  27 ++++-
 src/harvest/AnnotationList.h      |   7 +-
 src/harvest/HarvestIO.cpp         |  42 +++++++-
 src/harvest/HarvestIO.h           |   3 +-
 src/harvest/LcbList.cpp           | 121 ++++++++++++++++++++++
 src/harvest/LcbList.h             |   1 +
 src/harvest/PhylogenyTree.cpp     |  43 ++++++++
 src/harvest/PhylogenyTree.h       |   1 +
 src/harvest/PhylogenyTreeNode.cpp |   5 +-
 src/harvest/PhylogenyTreeNode.h   |   5 +-
 src/harvest/ReferenceList.cpp     |  14 +--
 src/harvest/ReferenceList.h       |  12 +--
 src/harvest/VariantList.cpp       | 210 +++++++++++++++++++++++++++++++++-----
 src/harvest/VariantList.h         | 139 ++++++++++++++++++++++++-
 src/harvest/harvest.cpp           | 141 +++++++++++++++++++++++--
 19 files changed, 746 insertions(+), 89 deletions(-)
 mode change 100644 => 100755 src/harvest/HarvestIO.cpp
 mode change 100644 => 100755 src/harvest/LcbList.cpp
 mode change 100644 => 100755 src/harvest/harvest.cpp

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