[med-svn] r22907 - in trunk/packages/R/r-bioc-biostrings/trunk/debian: . tests

[Andreas Tille]

Author: tille
Date: 2016-10-26 13:57:22 +0000 (Wed, 26 Oct 2016)
New Revision: 22907

Modified:
   trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
   trunk/packages/R/r-bioc-biostrings/trunk/debian/control
   trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright
   trunk/packages/R/r-bioc-biostrings/trunk/debian/rules
   trunk/packages/R/r-bioc-biostrings/trunk/debian/tests/run-unit-test
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2016-10-26 13:38:46 UTC (rev 22906)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/changelog	2016-10-26 13:57:22 UTC (rev 22907)
@@ -1,3 +1,11 @@
+r-bioc-biostrings (2.42.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 15:48:05 +0200
+
 r-bioc-biostrings (2.40.2-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2016-10-26 13:38:46 UTC (rev 22906)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/control	2016-10-26 13:57:22 UTC (rev 22907)
@@ -2,10 +2,9 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-xvector (>= 0.12.0),
                r-bioc-iranges (>= 2.6.0),
@@ -13,16 +12,15 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biostrings/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
+Homepage: https://bioconductor.org/packages/Biostrings/
 
 Package: r-bioc-biostrings
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-bioc-xvector (>= 0.12.0),
-         r-bioc-iranges (>= 2.6.0),
-         r-bioc-s4vectors (>= 0.10.1)
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R string objects representing biological sequences
  Memory efficient string containers, string matching algorithms, and other
  utilities, for fast manipulation of large biological sequences or set of

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright	2016-10-26 13:38:46 UTC (rev 22906)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/copyright	2016-10-26 13:57:22 UTC (rev 22907)
@@ -1,15 +1,15 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Biostrings
-Upstream-Contact: H. Pages
-Source: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
+Upstream-Contact: Herve Pages <hpages at fhcrc.org>
+Source: https://bioconductor.org/packages/Biostrings/
 
 Files: *
-Copyright: © 2006-2014 H. Pages, R. Gentleman, P. Aboyoun and S. DebRoy
+Copyright: © 2006-2016 H. Pages, R. Gentleman, P. Aboyoun and S. DebRoy
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/rules	2016-10-26 13:38:46 UTC (rev 22906)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/rules	2016-10-26 13:57:22 UTC (rev 22907)
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R

Modified: trunk/packages/R/r-bioc-biostrings/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-bioc-biostrings/trunk/debian/tests/run-unit-test	2016-10-26 13:38:46 UTC (rev 22906)
+++ trunk/packages/R/r-bioc-biostrings/trunk/debian/tests/run-unit-test	2016-10-26 13:57:22 UTC (rev 22907)
@@ -1,6 +1,6 @@
 #!/bin/sh -e
 oname=Biostrings
-pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
+pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'`
 if [ "$ADTTMP" = "" ] ; then
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi