[med-svn] r22949 - trunk/packages/R/r-bioc-gviz/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-27 14:02:20 +0000 (Thu, 27 Oct 2016)
New Revision: 22949

Modified:
   trunk/packages/R/r-bioc-gviz/trunk/debian/changelog
   trunk/packages/R/r-bioc-gviz/trunk/debian/control
   trunk/packages/R/r-bioc-gviz/trunk/debian/copyright
   trunk/packages/R/r-bioc-gviz/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-gviz/trunk/debian/changelog	2016-10-27 13:43:13 UTC (rev 22948)
+++ trunk/packages/R/r-bioc-gviz/trunk/debian/changelog	2016-10-27 14:02:20 UTC (rev 22949)
@@ -1,3 +1,11 @@
+r-bioc-gviz (1.18.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Thu, 27 Oct 2016 15:44:42 +0200
+
 r-bioc-gviz (1.16.4-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-gviz/trunk/debian/control	2016-10-27 13:43:13 UTC (rev 22948)
+++ trunk/packages/R/r-bioc-gviz/trunk/debian/control	2016-10-27 14:02:20 UTC (rev 22949)
@@ -4,7 +4,7 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-lattice,
                r-cran-rcolorbrewer,
@@ -14,17 +14,14 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-gviz/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-gviz/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/Gviz.html
+Homepage: https://bioconductor.org/packages/Gviz/
 
 Package: r-bioc-gviz
 Architecture: all
 Depends: ${R:Depends},
          ${misc:Depends},
-         r-cran-lattice,
-         r-cran-rcolorbrewer,
-         r-cran-latticeextra,
-         r-cran-matrixstats,
-         r-bioc-biovizbase (>= 1.14.0)
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: Plotting data and annotation information along genomic coordinates
  Genomic data analyses requires integrated visualization of known
  genomic information and new experimental data. Gviz uses the biomaRt and

Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-gviz/trunk/debian/copyright	2016-10-27 13:43:13 UTC (rev 22948)
+++ trunk/packages/R/r-bioc-gviz/trunk/debian/copyright	2016-10-27 14:02:20 UTC (rev 22949)
@@ -1,16 +1,16 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Gviz
 Upstream-Contact: Florian Hahne <florian.hahne at novartis.com> 
-Source: http://bioconductor.org/packages/release/bioc/html/Gviz.html
+Source: https://bioconductor.org/packages/Gviz/
 
 Files: *
-Copyright: © 2006-2014 Florian Hahne, Steffen Durinck,
+Copyright: © 2006-2016 Florian Hahne, Steffen Durinck,
                        Robert Ivanek, Arne Mueller, Steve Lianoglou 
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-gviz/trunk/debian/rules	2016-10-27 13:43:13 UTC (rev 22948)
+++ trunk/packages/R/r-bioc-gviz/trunk/debian/rules	2016-10-27 14:02:20 UTC (rev 22949)
@@ -1,8 +1,8 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
 
-install/$(package)::
-	chmod -x debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/scripts/*.R
-
+override_dh_install:
+	dh_install
+	find debian -name "*.R" -exec chmod -x \{\} \;