[med-svn] [r-cran-qqman] 04/06: Initial debian/*
Dylan Aïssi
bob.dybian-guest at moszumanska.debian.org
Thu Oct 27 20:51:00 UTC 2016
This is an automated email from the git hooks/post-receive script.
bob.dybian-guest pushed a commit to branch master
in repository r-cran-qqman.
commit 4dac8b0f95122a62cc2d458ef1183efdbb209679
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date: Thu Oct 27 22:15:19 2016 +0200
Initial debian/*
---
debian/changelog | 5 ++++
debian/compat | 1 +
debian/control | 21 ++++++++++++++++
debian/copyright | 29 ++++++++++++++++++++++
.../Fix_privacy-breach-uses-embedded-file.patch | 18 ++++++++++++++
debian/patches/series | 1 +
debian/rules | 5 ++++
debian/source/format | 1 +
debian/tests/control | 1 +
debian/upstream/metadata | 11 ++++++++
debian/watch | 2 ++
11 files changed, 95 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..720d07f
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+r-cran-qqman (0.1.2-1) UNRELEASED; urgency=medium
+
+ * Initial release (closes: #xxxxxx)
+
+ -- Dylan Aïssi <bob.dybian at gmail.com> Thu, 27 Oct 2016 22:11:05 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..a643b4f
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,21 @@
+Source: r-cran-qqman
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Dylan Aïssi <bob.dybian at gmail.com>
+Build-Depends: debhelper (>= 9), dh-r, r-base-dev
+Standards-Version: 3.9.8
+Homepage: https://cran.r-project.org/package=qqman
+Vcs-Browser: https://anonscm.debian.org/git/debian-med/r-cran-qqman.git/
+Vcs-Git: https://anonscm.debian.org/git/debian-med/r-cran-qqman.git/
+
+Package: r-cran-qqman
+Architecture: all
+Depends: ${R:Depends}, ${shlibs:Depends}, ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: R package for visualizing GWAS results using Q-Q and manhattan plots
+ qqman is an add-on package for the R statistical environment. This package
+ provides functions for visualizing Genome-Wide Association Studies (GWAS)
+ results using Manhattan plots and Quantile-Quantile plots.
+
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..75d7357
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,29 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: qqman
+Upstream-Contact: Stephen D. Turner <vustephen at gmail.com>
+Source: https://cran.r-project.org/package=qqman
+
+Files: *
+Copyright: 2013-2014 Stephen D. Turner
+License: GPL-3
+
+Files: debian/*
+Copyright: 2016 Dylan Aïssi <bob.dybian at gmail.com>
+License: GPL-3
+
+License: GPL-3
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License in version
+ 3 of the license as published by the Free Software Foundation.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-3'.
diff --git a/debian/patches/Fix_privacy-breach-uses-embedded-file.patch b/debian/patches/Fix_privacy-breach-uses-embedded-file.patch
new file mode 100644
index 0000000..454bbc9
--- /dev/null
+++ b/debian/patches/Fix_privacy-breach-uses-embedded-file.patch
@@ -0,0 +1,18 @@
+Author: Dylan Aïssi
+Description: Fix lintian privacy-breach-uses-embedded-file.
+Last-Update: 2016-10-27
+Forwarded: TODO
+
+--- a/inst/doc/qqman.html
++++ b/inst/doc/qqman.html
+@@ -45,10 +45,6 @@
+ hljs.initHighlightingOnLoad();
+ </script>
+
+-<!-- MathJax scripts -->
+-<script type="text/javascript" src="https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
+-</script>
+-
+
+ <style type="text/css">
+ body, td {
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..bd7012c
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+Fix_privacy-breach-uses-embedded-file.patch
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..529c38a
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,5 @@
+#!/usr/bin/make -f
+
+%:
+ dh $@ --buildsystem R
+
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..8b13789
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1 @@
+
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..aa87f40
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,11 @@
+Archive: CRAN
+Contact: Stephen D. Turner
+Name: qqman
+Reference:
+ - Author: Stephen D. Turner
+ Title: "qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots"
+ Journal: bioRxiv
+ Year: 2014
+ DOI: 10.1101/005165
+ URL: http://biorxiv.org/content/early/2014/05/14/005165
+ eprint: http://biorxiv.org/content/early/2014/05/14/005165.full.pdf
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..856437f
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,2 @@
+version=4
+https://cran.r-project.org/src/contrib/qqman_([-\d.]*)\.tar\.gz
--
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