[med-svn] [r-cran-plyr] 02/05: New upstream version 1.8.4

Andreas Tille tille at debian.org
Sun Oct 30 06:18:17 UTC 2016


This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-cran-plyr.

commit 9b70679a6ecbf3b68543ae2d37a11142aeecb01d
Author: Andreas Tille <tille at debian.org>
Date:   Sun Oct 30 07:06:10 2016 +0100

    New upstream version 1.8.4
---
 DESCRIPTION                    |   9 +-
 MD5                            | 220 ++++++++++++++++++++---------------------
 NAMESPACE                      |   3 +-
 R/l_ply.r                      |   2 +-
 R/llply.r                      |   2 +-
 R/loop_apply.R                 |   3 +-
 R/progress-time.r              |   6 +-
 R/progress.r                   |  12 +--
 R/quote.r                      |   2 +-
 R/rbind-fill-matrix.r          |   2 +-
 R/rbind-fill.r                 |   2 +-
 R/vaggregate.r                 |   2 +-
 README.md                      |   5 +-
 man/a_ply.Rd                   |   8 +-
 man/aaply.Rd                   |  10 +-
 man/adply.Rd                   |  10 +-
 man/alply.Rd                   |  10 +-
 man/amv_dim.Rd                 |   2 +-
 man/amv_dimnames.Rd            |   2 +-
 man/arrange.Rd                 |   2 +-
 man/as.data.frame.function.Rd  |   2 +-
 man/as.list.split.Rd           |   2 +-
 man/as.quoted.Rd               |   2 +-
 man/baseball.Rd                |   2 +-
 man/colwise.Rd                 |   2 +-
 man/compact.Rd                 |   2 +-
 man/count.Rd                   |   2 +-
 man/create_progress_bar.Rd     |   2 +-
 man/d_ply.Rd                   |   8 +-
 man/daply.Rd                   |  10 +-
 man/ddply.Rd                   |  10 +-
 man/defaults.Rd                |   2 +-
 man/desc.Rd                    |   2 +-
 man/dims.Rd                    |   2 +-
 man/dlply.Rd                   |  10 +-
 man/each.Rd                    |   2 +-
 man/empty.Rd                   |   2 +-
 man/eval.quoted.Rd             |   2 +-
 man/failwith.Rd                |   2 +-
 man/get-split.Rd               |   2 +-
 man/here.Rd                    |   2 +-
 man/id.Rd                      |   2 +-
 man/id_var.Rd                  |   2 +-
 man/idata.frame.Rd             |   2 +-
 man/indexed_array.Rd           |   2 +-
 man/indexed_df.Rd              |   2 +-
 man/is.discrete.Rd             |   2 +-
 man/is.formula.Rd              |   2 +-
 man/isplit2.Rd                 |   2 +-
 man/join.Rd                    |   2 +-
 man/join.keys.Rd               |   2 +-
 man/join_all.Rd                |   2 +-
 man/l_ply.Rd                   |   6 +-
 man/laply.Rd                   |   8 +-
 man/ldply.Rd                   |   8 +-
 man/liply.Rd                   |   2 +-
 man/list_to_array.Rd           |   4 +-
 man/list_to_dataframe.Rd       |   4 +-
 man/list_to_vector.Rd          |   4 +-
 man/llply.Rd                   |   8 +-
 man/loop_apply.Rd              |   2 +-
 man/m_ply.Rd                   |   8 +-
 man/maply.Rd                   |  10 +-
 man/mapvalues.Rd               |   4 +-
 man/match_df.Rd                |   2 +-
 man/mdply.Rd                   |  10 +-
 man/mlply.Rd                   |  10 +-
 man/mutate.Rd                  |   2 +-
 man/name_rows.Rd               |   2 +-
 man/names.quoted.Rd            |   2 +-
 man/nunique.Rd                 |   2 +-
 man/ozone.Rd                   |   2 +-
 man/plyr-deprecated.Rd         |   2 +-
 man/plyr.Rd                    |   2 +-
 man/print.quoted.Rd            |   2 +-
 man/print.split.Rd             |   2 +-
 man/progress_none.Rd           |   6 +-
 man/progress_text.Rd           |   6 +-
 man/progress_time.Rd           |   6 +-
 man/progress_tk.Rd             |   6 +-
 man/progress_win.Rd            |   6 +-
 man/quickdf.Rd                 |   2 +-
 man/quoted.Rd                  |   2 +-
 man/r_ply.Rd                   |   2 +-
 man/raply.Rd                   |   2 +-
 man/rbind.fill.Rd              |   2 +-
 man/rbind.fill.matrix.Rd       |   2 +-
 man/rdply.Rd                   |   2 +-
 man/reduce_dim.Rd              |   2 +-
 man/rename.Rd                  |   2 +-
 man/revalue.Rd                 |   4 +-
 man/rlply.Rd                   |   2 +-
 man/round_any.Rd               |   2 +-
 man/splat.Rd                   |   2 +-
 man/split_indices.Rd           |   2 +-
 man/split_labels.Rd            |   2 +-
 man/splitter_a.Rd              |   2 +-
 man/splitter_d.Rd              |   2 +-
 man/strip_splits.Rd            |   2 +-
 man/summarise.Rd               |   2 +-
 man/take.Rd                    |   2 +-
 man/true.Rd                    |   2 +-
 man/try_default.Rd             |   2 +-
 man/tryapply.Rd                |   2 +-
 man/unrowname.Rd               |   2 +-
 man/vaggregate.Rd              |   4 +-
 src/loop_apply.c               |   2 +-
 tests/testthat/test-array.r    |   7 +-
 tests/testthat/test-parallel.r |  14 +--
 tests/testthat/test-rbind.r    |   2 +-
 tests/testthat/test-revalue.r  |  18 ++--
 111 files changed, 325 insertions(+), 318 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 7c525e6..e1ba8f3 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: plyr
-Version: 1.8.3
+Version: 1.8.4
 Title: Tools for Splitting, Applying and Combining Data
 Description: A set of tools that solves a common set of problems: you
     need to break a big problem down into manageable pieces, operate on each
@@ -15,12 +15,13 @@ Depends: R (>= 3.1.0)
 Imports: Rcpp (>= 0.11.0)
 LinkingTo: Rcpp
 Suggests: abind, testthat, tcltk, foreach, doParallel, itertools,
-        iterators
+        iterators, covr
 License: MIT + file LICENSE
 LazyData: true
+RoxygenNote: 5.0.1
 NeedsCompilation: yes
-Packaged: 2015-06-11 13:04:58 UTC; hadley
+Packaged: 2016-06-07 19:58:36 UTC; hadley
 Author: Hadley Wickham [aut, cre]
 Maintainer: Hadley Wickham <hadley at rstudio.com>
 Repository: CRAN
-Date/Publication: 2015-06-12 11:05:51
+Date/Publication: 2016-06-08 10:40:15
diff --git a/MD5 b/MD5
index bf1ec98..fccadba 100644
--- a/MD5
+++ b/MD5
@@ -1,6 +1,6 @@
-36d5fb6a0ec237c345163967fc9bd932 *DESCRIPTION
+0eabd769da21390813bfa84e25ff25d0 *DESCRIPTION
 7bb6b2019939096672a443d7b6e80d5b *LICENSE
-7d27e6544333941b8a6bb428284e94a5 *NAMESPACE
+4b64244b65e48806ddb6e52b08e29701 *NAMESPACE
 b2c019f5dfd0df9d5bbbd15200be5f71 *R/RcppExports.R
 2cacb3ab0a140e444938f826a09b7a0d *R/a_ply.r
 4b2f1db5592db1334de9bd61ee98436b *R/aaply.r
@@ -26,15 +26,15 @@ fc14994abc7f86af89a188295a2dc5f5 *R/indexed-array.r
 4e3adb71aeb565d48c87cb1592b13714 *R/indexed.r
 cd70a68dd7556c7b463c64fbb0de98f2 *R/join-all.r
 bd3b37f2d0c588b577729987a7b390b2 *R/join.r
-6e34c47b9056f5f36376eef6843d05da *R/l_ply.r
+fbad4b6c69bc03fe649a893c6ee41061 *R/l_ply.r
 49db6bd50575429654a36aec5fca75dc *R/laply.r
 5c0761febd091075fd2c3c375458b9de *R/ldply.r
 996456dbd8d9748c3d7273a0b66b3cc0 *R/liply.r
 b082625367148bbede12cdeae2d9676d *R/list-to-array.r
 d2d461c086c0a59c3e8bcdc2f5760086 *R/list-to-dataframe.r
 0235ddca614287ca137a2a5ec80b6ecc *R/list-to-vector.r
-9327d643dd06cd7024a6524be121a838 *R/llply.r
-a111fc796dbb2bb6d98e8c7a44a3cf16 *R/loop_apply.R
+5b11e23dbf190ed0cdfae2c6377ad257 *R/llply.r
+145b339ac4875b011469243ce1c072a5 *R/loop_apply.R
 138f6c83d529bbf8c68f8830d7081570 *R/m_ply.r
 233c43c50f214fb7b6cb4da744bda204 *R/maply.r
 8c2d4fbdc639835b6a7d5fa2f01f0026 *R/match-df.r
@@ -45,14 +45,14 @@ f883208d0ce69464dfbe690812161a44 *R/name-rows.r
 45c5b329e5a1ab0aac2a6ccec2c2e60d *R/parallel.r
 f66e62cbef6484534c99dc3934eba248 *R/plyr-deprecated.r
 988021b688b3a21394e3ac8796297a0c *R/plyr.r
-badb88183c38a06b59b0d15b494dc519 *R/progress-time.r
-1b4dc98ab2f6f64e05a42a267af62735 *R/progress.r
+22232615909daf78127cfde12d5e199d *R/progress-time.r
+77e7c5e10eb6de675e000b27e006c805 *R/progress.r
 87b4723fec09c203ea9c98373d87cb4b *R/quickdf.r
-641e1f551f467a54bdbb1defabd16dda *R/quote.r
+4505d22d30f983ade43482967a8873d3 *R/quote.r
 d2d78e4a2a595733f0f9b15b50a36ce0 *R/r_ply.r
 9280ab29ec7162e29f330717de5ee90e *R/raply.r
-5a5535287db53f7ae90e471c26d931b7 *R/rbind-fill-matrix.r
-ef73a8bd57984bfce6b86508dcc971c2 *R/rbind-fill.r
+4fb819a754a3c96194ce9c11ef181f52 *R/rbind-fill-matrix.r
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 415e517a3aa9f222679efad6c5729a3c *R/rename.r
 ddd658679cca81363137627bfe7edaa2 *R/revalue.r
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-f43b813417d6d38f110c67421bd1076f *README.md
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 9b2d63a08f6c4d1718642d2c904c230a *data/baseball.rda
 12d6f72bbc8c97a10e7c4c235aab3ae3 *data/ozone.rda
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+8070bfa8b4d1a9d45451d9ee7a41dc19 *man/l_ply.Rd
+8ce55a8da390a5f16512f23882be592c *man/laply.Rd
+a5f50ecdf0c92c61b16602d398c814b8 *man/ldply.Rd
+d10088717473dbbe7b28c461fdc35cff *man/liply.Rd
+f12d275ae13a5cd62509bde7939dc055 *man/list_to_array.Rd
+083ea754ecaf400cc61344ae07696d36 *man/list_to_dataframe.Rd
+d979c64d10d3de44ac6f8b3799c88949 *man/list_to_vector.Rd
+15d631c43b98b4b159e99a70bbe1ff9e *man/llply.Rd
+a35c7bb83b737304f86867a429f3d91e *man/loop_apply.Rd
+6aa28c05105280313c57948849da5068 *man/m_ply.Rd
+e443316094ee57fea1e6efbc21964afa *man/maply.Rd
+88c8d59a11b2e3e5081929c6c561064c *man/mapvalues.Rd
+98b60d2a6ea7a0cd1b130a8512010860 *man/match_df.Rd
+a8f7638104bfc99d0e5c9a4b430c2f6d *man/mdply.Rd
+5abd240272a8b8390a869cc197344505 *man/mlply.Rd
+d599d7169bbf2963c8f433aad97ec827 *man/mutate.Rd
+3c567c3ecd3971134bd81b8abdd08740 *man/name_rows.Rd
+ed676c9f2db1cfecc686872d0e1644ab *man/names.quoted.Rd
+890fab96ab468943c9805f0fddc62820 *man/nunique.Rd
+c1020c6f1c8aedf4c9e9d350def9626b *man/ozone.Rd
+50386b437e69a271f9fb5f51731a8d63 *man/plyr-deprecated.Rd
+1e9f8399d00f22adc0207d4e3f82fb3a *man/plyr.Rd
+a6e1ac64d2075b7c9cdc6b0eef0cfd89 *man/print.quoted.Rd
+a90f5b053997fb7e5733ca4f824c13e3 *man/print.split.Rd
+3c120376b017acda7fbab3a69de91d99 *man/progress_none.Rd
+ec7b77b5a3a2834ad6a5661fac706cb8 *man/progress_text.Rd
+eaf9a6bc4690fce57de65353b88b1236 *man/progress_time.Rd
+2a9db33f861fbf959fd5edc0c6f23b1e *man/progress_tk.Rd
+a05f44c388fb9d2355ba9fc57a0ac4fa *man/progress_win.Rd
+3ffb3b97f5439ed72cd6415d116c4430 *man/quickdf.Rd
+e4c4b286021c48a7b0809b548e20986b *man/quoted.Rd
+29e8a6f89b6504e53f9bdd4a49e3d454 *man/r_ply.Rd
+7120203b692e1b4825af6310deff0439 *man/raply.Rd
+64a20340aba8e902a21633b67a510840 *man/rbind.fill.Rd
+efd035018fd2ff3fe32edb108b78d55f *man/rbind.fill.matrix.Rd
+53092a8b2fdc028b9395c99efd6a0812 *man/rdply.Rd
+3b7d15065382081bfe1148b9a32acf3f *man/reduce_dim.Rd
+51543a5540e1fb33957a64af3fe28ba7 *man/rename.Rd
+ddff8ca6ad04dcfa9e50f4fc2a261109 *man/revalue.Rd
+acfbf7efc1073acd4fafd21ef0851f61 *man/rlply.Rd
+b425a17495bb8b09da722b5172953330 *man/round_any.Rd
+b5169560671c346c56502a8d7fb63a4b *man/splat.Rd
+7a1d7d40a3b822af6513dd6fe6b48972 *man/split_indices.Rd
+d8507d4da74b3d053af150437f882c13 *man/split_labels.Rd
+d05abc431d724abfdadf254cd027bfb2 *man/splitter_a.Rd
+ec605226f5d837f7156869fe9af4c76d *man/splitter_d.Rd
+cdca92a3eed9a98e3932e475135834b9 *man/strip_splits.Rd
+569dbf864b161062ed1940c5f07e0dac *man/summarise.Rd
+d0632c368f1a85129cf99ef396688555 *man/take.Rd
+7adfcc5aa9a0d0a189c6ed8bb111c624 *man/true.Rd
+864d2a3a5cd409f6d6666adda617bc4e *man/try_default.Rd
+d71b18bf0dea8745124dd6af2e286755 *man/tryapply.Rd
+2f72b64634ade621ac77a71f83b7d1e9 *man/unrowname.Rd
+8d33f326a3a74881c35c1380197e9ba9 *man/vaggregate.Rd
 023038c8fd8345b5b892162bd7c6e5c9 *src/RcppExports.cpp
-84f02af9633d0c631a97bc17a8518c59 *src/loop_apply.c
+75d31e4f078aa79bd86e91ee5f85b322 *src/loop_apply.c
 635efc489b194a6b73c08a2e2896b36f *src/split-numeric.cpp
 3c5e14d243849a45ef414e14aa5a5184 *tests/testthat.R
 d564b7820ed6c9598ef0e9f39913a4dc *tests/testthat/quickdf.r
 276325b0874ec8b9dae723d82a2be520 *tests/testthat/test-arrange.r
-98227dadd35a099b244e08944b9ad126 *tests/testthat/test-array.r
+05359b6d7232906cab6f6ef7238d541a *tests/testthat/test-array.r
 187e40ad2a81d6d05ff7d359b3abcdc0 *tests/testthat/test-count.r
 8e4432b2f786df04c93acbc3df0e6dd8 *tests/testthat/test-data-frame.r
 e48e8b4ea198110449eee62660bb7f87 *tests/testthat/test-debug.r
@@ -185,14 +185,14 @@ d09ac8d7646b3d6c434c50467580dc8c *tests/testthat/test-list.r
 e4a2dbcd3e829d98895ac697916dbfc5 *tests/testthat/test-mapply.r
 0d1b884651b4e602c267673c4f86c130 *tests/testthat/test-mutate.r
 c66dedf6251001e69782f7c3f5a54349 *tests/testthat/test-ninteraction.r
-90617f3820f3ffd03fb4fb0dd4212dfc *tests/testthat/test-parallel.r
+a862ac5d7ab225e96258d6d67d820239 *tests/testthat/test-parallel.r
 146c98c42bcdd398d2805c35aaf83b6d *tests/testthat/test-progress.r
 173260708c547a2ebd96c2cd797c8e07 *tests/testthat/test-quote.r
 226e8fd21e0da1a8a7edfb46e81a0ebc *tests/testthat/test-rbind.matrix.r
-aee48ac33dc689320266734d9aa21aba *tests/testthat/test-rbind.r
+efaeb4f1816d9f4daa5011b1d192c9b0 *tests/testthat/test-rbind.r
 567571b52e4ddee6873533f2f1ed3185 *tests/testthat/test-rename.r
 30bab23a097dc350296100a63088b04e *tests/testthat/test-replicate.r
-661bace3a8cc6b8ac00d475fa88d9b9d *tests/testthat/test-revalue.r
+a4727a9d37fcf4385aab5b72866d8332 *tests/testthat/test-revalue.r
 949976e498103b10ace8b99e01d8c38a *tests/testthat/test-rply.r
 c2a2f2887e3926a850e1923ae62689a0 *tests/testthat/test-simplify-df.r
 8333352212f7d58b1e53ce26a60afb5f *tests/testthat/test-split-data-frame.r
diff --git a/NAMESPACE b/NAMESPACE
index 99774c8..3f1ca00 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -1,4 +1,4 @@
-# Generated by roxygen2 (4.1.1): do not edit by hand
+# Generated by roxygen2: do not edit by hand
 
 S3method("[",idf)
 S3method("[",indexed)
@@ -110,3 +110,4 @@ export(vaggregate)
 importFrom(Rcpp,sourceCpp)
 importFrom(stats,setNames)
 useDynLib(plyr)
+useDynLib(plyr,loop_apply_)
diff --git a/R/l_ply.r b/R/l_ply.r
index 624ed43..5f174ea 100644
--- a/R/l_ply.r
+++ b/R/l_ply.r
@@ -40,7 +40,7 @@ l_ply <- function(.data, .fun = NULL, ..., .progress = "none", .inform = FALSE,
     if (.inform) {
       res <- try(.fun(piece, ...))
       if (inherits(res, "try-error")) {
-        piece <- paste(capture.output(print(piece)), collapse = "\n")
+        piece <- paste(utils::capture.output(print(piece)), collapse = "\n")
         stop("with piece ", i, ": \n", piece, call. = FALSE)
       }
     } else {
diff --git a/R/llply.r b/R/llply.r
index 90e28f7..db11e23 100644
--- a/R/llply.r
+++ b/R/llply.r
@@ -56,7 +56,7 @@ llply <- function(.data, .fun = NULL, ..., .progress = "none", .inform = FALSE,
     if (.inform) {
       res <- try(.fun(piece, ...))
       if (inherits(res, "try-error")) {
-        piece <- paste(capture.output(print(piece)), collapse = "\n")
+        piece <- paste(utils::capture.output(print(piece)), collapse = "\n")
         stop("with piece ", i, ": \n", piece, call. = FALSE)
       }
     } else {
diff --git a/R/loop_apply.R b/R/loop_apply.R
index 9905326..d484d61 100644
--- a/R/loop_apply.R
+++ b/R/loop_apply.R
@@ -7,7 +7,8 @@
 #' @param f function to apply to each integer
 #' @param env environment in which to evaluate function
 #' @useDynLib plyr
+#' @useDynLib plyr loop_apply_
 #' @keywords internal manip
 loop_apply <- function(n, f, env = parent.frame()) {
-  .Call("loop_apply", as.integer(n), f, env)
+  .Call(loop_apply_, as.integer(n), f, env)
 }
diff --git a/R/progress-time.r b/R/progress-time.r
index 57feaeb..d08bc7e 100644
--- a/R/progress-time.r
+++ b/R/progress-time.r
@@ -13,11 +13,11 @@ progress_time <- function() {
   list(
     init = function(x) {
       txt <<- txtTimerBar(x)
-      setTxtProgressBar(txt, 0)
+      utils::setTxtProgressBar(txt, 0)
     },
     step = function() {
       n <<- n + 1
-      setTxtProgressBar(txt, n)
+      utils::setTxtProgressBar(txt, n)
     },
     term = function() close(txt)
   )
@@ -82,7 +82,7 @@ cat_line <- function(...) {
   msg <- paste(..., sep = "", collapse = "")
   gap <- max(c(0, getOption("width") - nchar(msg, "width")))
   cat("\r", msg, rep.int(" ", gap), sep = "")
-  flush.console()
+  utils::flush.console()
 }
 
 str_rep <- function(x, i) {
diff --git a/R/progress.r b/R/progress.r
index d38b9e1..ea4d8ff 100644
--- a/R/progress.r
+++ b/R/progress.r
@@ -89,12 +89,12 @@ progress_text <- function(style = 3, ...) {
 
   list(
     init = function(x) {
-      txt <<- txtProgressBar(max = x, style = style, ...)
-      setTxtProgressBar(txt, 0)
+      txt <<- utils::txtProgressBar(max = x, style = style, ...)
+      utils::setTxtProgressBar(txt, 0)
     },
     step = function() {
       n <<- n + 1
-      setTxtProgressBar(txt, n)
+      utils::setTxtProgressBar(txt, n)
     },
     term = function() close(txt)
   )
@@ -158,12 +158,12 @@ progress_win <- function(title = "plyr progress", ...) {
 
   list(
     init = function(x) {
-      win <<- winProgressBar(max = x, title = title, ...) # nolint
-      setWinProgressBar(win, 0) # nolint
+      win <<- utils::winProgressBar(max = x, title = title, ...) # nolint
+      utils::setWinProgressBar(win, 0) # nolint
     },
     step = function() {
       n <<- n + 1
-      setWinProgressBar(win, n) # nolint
+      utils::setWinProgressBar(win, n) # nolint
     },
     term = function() close(win)
   )
diff --git a/R/quote.r b/R/quote.r
index 1506e25..06582a7 100644
--- a/R/quote.r
+++ b/R/quote.r
@@ -50,7 +50,7 @@ is.quoted <- function(x) inherits(x, "quoted")
 #'
 #' @keywords internal
 #' @export
-print.quoted <- function(x, ...) str(x)
+print.quoted <- function(x, ...) utils::str(x)
 
 #' Compute names of quoted variables.
 #'
diff --git a/R/rbind-fill-matrix.r b/R/rbind-fill-matrix.r
index f823a39..8652bda 100644
--- a/R/rbind-fill-matrix.r
+++ b/R/rbind-fill-matrix.r
@@ -70,7 +70,7 @@ rbind.fill.matrix <- function(...) {
 
   ## fill in the new matrix
   for (i in seq_along(rows)) {
-    rng <- seq(pos[i, 1], length = pos[i, 2])
+    rng <- seq(pos[i, 1], length.out = pos[i, 2])
     output[rng, lcols[[i]]] <- matrices[[i]]
   }
 
diff --git a/R/rbind-fill.r b/R/rbind-fill.r
index bf38c85..0e2335f 100644
--- a/R/rbind-fill.r
+++ b/R/rbind-fill.r
@@ -63,7 +63,7 @@ rbind.fill <- function(...) {
 
   # Copy inputs into output
   for (i in seq_along(rows)) {
-    rng <- seq(pos[i, 1], length = pos[i, 2])
+    rng <- seq(pos[i, 1], length.out = pos[i, 2])
     df <- dfs[[i]]
 
     for (var in names(df)) {
diff --git a/R/vaggregate.r b/R/vaggregate.r
index 4c07212..933f337 100644
--- a/R/vaggregate.r
+++ b/R/vaggregate.r
@@ -19,7 +19,7 @@
 #' @export
 #' @examples
 #' # Some examples of use borrowed from ?tapply
-#' n <- 17; fac <- factor(rep(1:3, length = n), levels = 1:5)
+#' n <- 17; fac <- factor(rep(1:3, length.out = n), levels = 1:5)
 #' table(fac)
 #' vaggregate(1:n, fac, sum)
 #' vaggregate(1:n, fac, sum, .default = NA_integer_)
diff --git a/README.md b/README.md
index c79d97c..c9c5a8b 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,8 @@
-[![Build Status](https://travis-ci.org/hadley/plyr.png?branch=master)](https://travis-ci.org/hadley/plyr) [![Coverage Status](https://coveralls.io/repos/hadley/plyr/badge.svg?branch=master)](https://coveralls.io/r/hadley/plyr?branch=master)
-
 # plyr
 
+[![Build Status](https://travis-ci.org/hadley/plyr.png?branch=master)](https://travis-ci.org/hadley/plyr)
+[![Coverage Status](https://img.shields.io/codecov/c/github/hadley/plyr/master.svg)](https://codecov.io/github/hadley/plyr?branch=master)
+
 plyr is a set of tools for a common set of problems: you need to __split__ up a big data structure into homogeneous pieces, __apply__ a function to each piece and then __combine__ all the results back together. For example, you might want to:
 
   * fit the same model each patient subsets of a data frame
diff --git a/man/a_ply.Rd b/man/a_ply.Rd
index aecfb72..66ecbd6 100644
--- a/man/a_ply.Rd
+++ b/man/a_ply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/a_ply.r
 \name{a_ply}
 \alias{a_ply}
@@ -65,10 +65,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array input: \code{\link{aaply}};
-  \code{\link{adply}}; \code{\link{alply}}
+Other array input: \code{\link{aaply}},
+  \code{\link{adply}}, \code{\link{alply}}
 
-Other no output: \code{\link{d_ply}}; \code{\link{l_ply}};
+Other no output: \code{\link{d_ply}}, \code{\link{l_ply}},
   \code{\link{m_ply}}
 }
 \keyword{manip}
diff --git a/man/aaply.Rd b/man/aaply.Rd
index d960954..c453a4f 100644
--- a/man/aaply.Rd
+++ b/man/aaply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/aaply.r
 \name{aaply}
 \alias{aaply}
@@ -98,11 +98,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array input: \code{\link{a_ply}};
-  \code{\link{adply}}; \code{\link{alply}}
+Other array input: \code{\link{a_ply}},
+  \code{\link{adply}}, \code{\link{alply}}
 
-Other array output: \code{\link{daply}};
-  \code{\link{laply}}; \code{\link{maply}}
+Other array output: \code{\link{daply}},
+  \code{\link{laply}}, \code{\link{maply}}
 }
 \keyword{manip}
 
diff --git a/man/adply.Rd b/man/adply.Rd
index c9f1794..c26ed13 100644
--- a/man/adply.Rd
+++ b/man/adply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/adply.r
 \name{adply}
 \alias{adply}
@@ -76,11 +76,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array input: \code{\link{a_ply}};
-  \code{\link{aaply}}; \code{\link{alply}}
+Other array input: \code{\link{a_ply}},
+  \code{\link{aaply}}, \code{\link{alply}}
 
-Other data frame output: \code{\link{ddply}};
-  \code{\link{ldply}}; \code{\link{mdply}}
+Other data frame output: \code{\link{ddply}},
+  \code{\link{ldply}}, \code{\link{mdply}}
 }
 \keyword{manip}
 
diff --git a/man/alply.Rd b/man/alply.Rd
index dfe047e..3def811 100644
--- a/man/alply.Rd
+++ b/man/alply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/alply.r
 \name{alply}
 \alias{alply}
@@ -77,11 +77,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array input: \code{\link{a_ply}};
-  \code{\link{aaply}}; \code{\link{adply}}
+Other array input: \code{\link{a_ply}},
+  \code{\link{aaply}}, \code{\link{adply}}
 
-Other list output: \code{\link{dlply}};
-  \code{\link{llply}}; \code{\link{mlply}}
+Other list output: \code{\link{dlply}},
+  \code{\link{llply}}, \code{\link{mlply}}
 }
 \keyword{manip}
 
diff --git a/man/amv_dim.Rd b/man/amv_dim.Rd
index f208013..f8bd16d 100644
--- a/man/amv_dim.Rd
+++ b/man/amv_dim.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/dimensions.r
 \name{amv_dim}
 \alias{amv_dim}
diff --git a/man/amv_dimnames.Rd b/man/amv_dimnames.Rd
index 8732ebe..1f1e147 100644
--- a/man/amv_dimnames.Rd
+++ b/man/amv_dimnames.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/dimensions.r
 \name{amv_dimnames}
 \alias{amv_dimnames}
diff --git a/man/arrange.Rd b/man/arrange.Rd
index 7af1331..1a8436a 100644
--- a/man/arrange.Rd
+++ b/man/arrange.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/arrange.r
 \name{arrange}
 \alias{arrange}
diff --git a/man/as.data.frame.function.Rd b/man/as.data.frame.function.Rd
index 7b98552..b36bf0a 100644
--- a/man/as.data.frame.function.Rd
+++ b/man/as.data.frame.function.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/data-frame.r
 \name{as.data.frame.function}
 \alias{as.data.frame.function}
diff --git a/man/as.list.split.Rd b/man/as.list.split.Rd
index f09f337..32c8c38 100644
--- a/man/as.list.split.Rd
+++ b/man/as.list.split.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/split.r
 \name{as.list.split}
 \alias{as.list.split}
diff --git a/man/as.quoted.Rd b/man/as.quoted.Rd
index 28f381c..bd62e64 100644
--- a/man/as.quoted.Rd
+++ b/man/as.quoted.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quote.r
 \name{as.quoted}
 \alias{as.quoted}
diff --git a/man/baseball.Rd b/man/baseball.Rd
index 92c18c4..c40315e 100644
--- a/man/baseball.Rd
+++ b/man/baseball.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/data.r
 \docType{data}
 \name{baseball}
diff --git a/man/colwise.Rd b/man/colwise.Rd
index 0f6da91..eaefecc 100644
--- a/man/colwise.Rd
+++ b/man/colwise.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/colwise.r
 \name{colwise}
 \alias{catcolwise}
diff --git a/man/compact.Rd b/man/compact.Rd
index ee4ff93..c0c5a4d 100644
--- a/man/compact.Rd
+++ b/man/compact.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{compact}
 \alias{compact}
diff --git a/man/count.Rd b/man/count.Rd
index c061c4d..b9d1fb1 100644
--- a/man/count.Rd
+++ b/man/count.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/count.r
 \name{count}
 \alias{count}
diff --git a/man/create_progress_bar.Rd b/man/create_progress_bar.Rd
index 5483bf5..eb07501 100644
--- a/man/create_progress_bar.Rd
+++ b/man/create_progress_bar.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress.r
 \name{create_progress_bar}
 \alias{create_progress_bar}
diff --git a/man/d_ply.Rd b/man/d_ply.Rd
index 87eaf6f..9babffb 100644
--- a/man/d_ply.Rd
+++ b/man/d_ply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/d_ply.r
 \name{d_ply}
 \alias{d_ply}
@@ -64,10 +64,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other data frame input: \code{\link{daply}};
-  \code{\link{ddply}}; \code{\link{dlply}}
+Other data frame input: \code{\link{daply}},
+  \code{\link{ddply}}, \code{\link{dlply}}
 
-Other no output: \code{\link{a_ply}}; \code{\link{l_ply}};
+Other no output: \code{\link{a_ply}}, \code{\link{l_ply}},
   \code{\link{m_ply}}
 }
 \keyword{manip}
diff --git a/man/daply.Rd b/man/daply.Rd
index 8deb34c..159056f 100644
--- a/man/daply.Rd
+++ b/man/daply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/daply.r
 \name{daply}
 \alias{daply}
@@ -78,11 +78,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array output: \code{\link{aaply}};
-  \code{\link{laply}}; \code{\link{maply}}
+Other array output: \code{\link{aaply}},
+  \code{\link{laply}}, \code{\link{maply}}
 
-Other data frame input: \code{\link{d_ply}};
-  \code{\link{ddply}}; \code{\link{dlply}}
+Other data frame input: \code{\link{d_ply}},
+  \code{\link{ddply}}, \code{\link{dlply}}
 }
 \keyword{manip}
 
diff --git a/man/ddply.Rd b/man/ddply.Rd
index 30a703d..95b74e4 100644
--- a/man/ddply.Rd
+++ b/man/ddply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/ddply.r
 \name{ddply}
 \alias{ddply}
@@ -100,11 +100,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
 \seealso{
 \code{\link{tapply}} for similar functionality in the base package
 
-Other data frame input: \code{\link{d_ply}};
-  \code{\link{daply}}; \code{\link{dlply}}
+Other data frame input: \code{\link{d_ply}},
+  \code{\link{daply}}, \code{\link{dlply}}
 
-Other data frame output: \code{\link{adply}};
-  \code{\link{ldply}}; \code{\link{mdply}}
+Other data frame output: \code{\link{adply}},
+  \code{\link{ldply}}, \code{\link{mdply}}
 }
 \keyword{manip}
 
diff --git a/man/defaults.Rd b/man/defaults.Rd
index f02fa29..54e53e0 100644
--- a/man/defaults.Rd
+++ b/man/defaults.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/defaults.r
 \name{defaults}
 \alias{defaults}
diff --git a/man/desc.Rd b/man/desc.Rd
index 39774ad..bbc55cb 100644
--- a/man/desc.Rd
+++ b/man/desc.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/arrange.r
 \name{desc}
 \alias{desc}
diff --git a/man/dims.Rd b/man/dims.Rd
index 1ec5191..bee09e8 100644
--- a/man/dims.Rd
+++ b/man/dims.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/dimensions.r
 \name{dims}
 \alias{dims}
diff --git a/man/dlply.Rd b/man/dlply.Rd
index df9b6c9..2242aed 100644
--- a/man/dlply.Rd
+++ b/man/dlply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/dlply.r
 \name{dlply}
 \alias{dlply}
@@ -73,11 +73,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other data frame input: \code{\link{d_ply}};
-  \code{\link{daply}}; \code{\link{ddply}}
+Other data frame input: \code{\link{d_ply}},
+  \code{\link{daply}}, \code{\link{ddply}}
 
-Other list output: \code{\link{alply}};
-  \code{\link{llply}}; \code{\link{mlply}}
+Other list output: \code{\link{alply}},
+  \code{\link{llply}}, \code{\link{mlply}}
 }
 \keyword{manip}
 
diff --git a/man/each.Rd b/man/each.Rd
index 51ed81b..c2741af 100644
--- a/man/each.Rd
+++ b/man/each.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/each.r
 \name{each}
 \alias{each}
diff --git a/man/empty.Rd b/man/empty.Rd
index 5050a8d..195cb7d 100644
--- a/man/empty.Rd
+++ b/man/empty.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{empty}
 \alias{empty}
diff --git a/man/eval.quoted.Rd b/man/eval.quoted.Rd
index 1a54380..66aa332 100644
--- a/man/eval.quoted.Rd
+++ b/man/eval.quoted.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quote.r
 \name{eval.quoted}
 \alias{eval.quoted}
diff --git a/man/failwith.Rd b/man/failwith.Rd
index d231c0f..eb58a84 100644
--- a/man/failwith.Rd
+++ b/man/failwith.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/try.r
 \name{failwith}
 \alias{failwith}
diff --git a/man/get-split.Rd b/man/get-split.Rd
index 87bf5a3..e9ef77f 100644
--- a/man/get-split.Rd
+++ b/man/get-split.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/split.r
 \name{[.split}
 \alias{[.split}
diff --git a/man/here.Rd b/man/here.Rd
index 259350c..64cb07f 100644
--- a/man/here.Rd
+++ b/man/here.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/here.r
 \name{here}
 \alias{here}
diff --git a/man/id.Rd b/man/id.Rd
index dec3384..f10205d 100644
--- a/man/id.Rd
+++ b/man/id.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/id.r
 \name{id}
 \alias{id}
diff --git a/man/id_var.Rd b/man/id_var.Rd
index 6b8ae3c..c9f0324 100644
--- a/man/id_var.Rd
+++ b/man/id_var.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/id.r
 \name{id_var}
 \alias{id_var}
diff --git a/man/idata.frame.Rd b/man/idata.frame.Rd
index 268b294..e2526c7 100644
--- a/man/idata.frame.Rd
+++ b/man/idata.frame.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/idataframe.r
 \name{idata.frame}
 \alias{idata.frame}
diff --git a/man/indexed_array.Rd b/man/indexed_array.Rd
index 41add9e..2ba51b0 100644
--- a/man/indexed_array.Rd
+++ b/man/indexed_array.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/indexed-array.r
 \name{indexed_array}
 \alias{[[.indexed_array}
diff --git a/man/indexed_df.Rd b/man/indexed_df.Rd
index 6faabd7..d31ad1d 100644
--- a/man/indexed_df.Rd
+++ b/man/indexed_df.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/indexed-data-frame.r
 \name{indexed_df}
 \alias{indexed_df}
diff --git a/man/is.discrete.Rd b/man/is.discrete.Rd
index ffccd5d..a94d8cc 100644
--- a/man/is.discrete.Rd
+++ b/man/is.discrete.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{is.discrete}
 \alias{is.discrete}
diff --git a/man/is.formula.Rd b/man/is.formula.Rd
index 3852bda..1f27d1d 100644
--- a/man/is.formula.Rd
+++ b/man/is.formula.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{is.formula}
 \alias{is.formula}
diff --git a/man/isplit2.Rd b/man/isplit2.Rd
index 51fffad..b8cbf9b 100644
--- a/man/isplit2.Rd
+++ b/man/isplit2.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/liply.r
 \name{isplit2}
 \alias{isplit2}
diff --git a/man/join.Rd b/man/join.Rd
index 2e2582c..e6d92ac 100644
--- a/man/join.Rd
+++ b/man/join.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/join.r
 \name{join}
 \alias{join}
diff --git a/man/join.keys.Rd b/man/join.keys.Rd
index 7c881df..6248ef9 100644
--- a/man/join.keys.Rd
+++ b/man/join.keys.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/join.r
 \name{join.keys}
 \alias{join.keys}
diff --git a/man/join_all.Rd b/man/join_all.Rd
index ffe854c..edcca9f 100644
--- a/man/join_all.Rd
+++ b/man/join_all.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/join-all.r
 \name{join_all}
 \alias{join_all}
diff --git a/man/l_ply.Rd b/man/l_ply.Rd
index d3fa766..6e4f7ea 100644
--- a/man/l_ply.Rd
+++ b/man/l_ply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/l_ply.r
 \name{l_ply}
 \alias{l_ply}
@@ -59,10 +59,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other list input: \code{\link{laply}}; \code{\link{ldply}};
+Other list input: \code{\link{laply}}, \code{\link{ldply}},
   \code{\link{llply}}
 
-Other no output: \code{\link{a_ply}}; \code{\link{d_ply}};
+Other no output: \code{\link{a_ply}}, \code{\link{d_ply}},
   \code{\link{m_ply}}
 }
 \keyword{manip}
diff --git a/man/laply.Rd b/man/laply.Rd
index 211a75b..350fe7b 100644
--- a/man/laply.Rd
+++ b/man/laply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/laply.r
 \name{laply}
 \alias{laply}
@@ -74,10 +74,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array output: \code{\link{aaply}};
-  \code{\link{daply}}; \code{\link{maply}}
+Other array output: \code{\link{aaply}},
+  \code{\link{daply}}, \code{\link{maply}}
 
-Other list input: \code{\link{l_ply}}; \code{\link{ldply}};
+Other list input: \code{\link{l_ply}}, \code{\link{ldply}},
   \code{\link{llply}}
 }
 \keyword{manip}
diff --git a/man/ldply.Rd b/man/ldply.Rd
index d38ff2b..272e4de 100644
--- a/man/ldply.Rd
+++ b/man/ldply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/ldply.r
 \name{ldply}
 \alias{ldply}
@@ -64,10 +64,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other data frame output: \code{\link{adply}};
-  \code{\link{ddply}}; \code{\link{mdply}}
+Other data frame output: \code{\link{adply}},
+  \code{\link{ddply}}, \code{\link{mdply}}
 
-Other list input: \code{\link{l_ply}}; \code{\link{laply}};
+Other list input: \code{\link{l_ply}}, \code{\link{laply}},
   \code{\link{llply}}
 }
 \keyword{manip}
diff --git a/man/liply.Rd b/man/liply.Rd
index b88c12f..13a1b58 100644
--- a/man/liply.Rd
+++ b/man/liply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/liply.r
 \name{liply}
 \alias{liply}
diff --git a/man/list_to_array.Rd b/man/list_to_array.Rd
index 8d175c2..caec826 100644
--- a/man/list_to_array.Rd
+++ b/man/list_to_array.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/list-to-array.r
 \name{list_to_array}
 \alias{list_to_array}
@@ -17,7 +17,7 @@ list_to_array(res, labels = NULL, .drop = FALSE)
 Reduce/simplify a list of homogenous objects to an array
 }
 \seealso{
-Other list simplification functions: \code{\link{list_to_dataframe}};
+Other list simplification functions: \code{\link{list_to_dataframe}},
   \code{\link{list_to_vector}}
 }
 \keyword{internal}
diff --git a/man/list_to_dataframe.Rd b/man/list_to_dataframe.Rd
index 66b4055..f59033a 100644
--- a/man/list_to_dataframe.Rd
+++ b/man/list_to_dataframe.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/list-to-dataframe.r
 \name{list_to_dataframe}
 \alias{list_to_dataframe}
@@ -21,7 +21,7 @@ Reduce/simplify a list of homogenous objects to a data frame. All
 or all data frames.
 }
 \seealso{
-Other list simplification functions: \code{\link{list_to_array}};
+Other list simplification functions: \code{\link{list_to_array}},
   \code{\link{list_to_vector}}
 }
 \keyword{internal}
diff --git a/man/list_to_vector.Rd b/man/list_to_vector.Rd
index ed21b67..a545356 100644
--- a/man/list_to_vector.Rd
+++ b/man/list_to_vector.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/list-to-vector.r
 \name{list_to_vector}
 \alias{list_to_vector}
@@ -13,7 +13,7 @@ list_to_vector(res)
 Reduce/simplify a list of homogenous objects to a vector
 }
 \seealso{
-Other list simplification functions: \code{\link{list_to_array}};
+Other list simplification functions: \code{\link{list_to_array}},
   \code{\link{list_to_dataframe}}
 }
 \keyword{internal}
diff --git a/man/llply.Rd b/man/llply.Rd
index d1d0d6d..cc483e2 100644
--- a/man/llply.Rd
+++ b/man/llply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/llply.r
 \name{llply}
 \alias{llply}
@@ -64,11 +64,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other list input: \code{\link{l_ply}}; \code{\link{laply}};
+Other list input: \code{\link{l_ply}}, \code{\link{laply}},
   \code{\link{ldply}}
 
-Other list output: \code{\link{alply}};
-  \code{\link{dlply}}; \code{\link{mlply}}
+Other list output: \code{\link{alply}},
+  \code{\link{dlply}}, \code{\link{mlply}}
 }
 \keyword{manip}
 
diff --git a/man/loop_apply.Rd b/man/loop_apply.Rd
index f3ac11b..a92bcb4 100644
--- a/man/loop_apply.Rd
+++ b/man/loop_apply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/loop_apply.R
 \name{loop_apply}
 \alias{loop_apply}
diff --git a/man/m_ply.Rd b/man/m_ply.Rd
index 35434cd..2c2e39c 100644
--- a/man/m_ply.Rd
+++ b/man/m_ply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/m_ply.r
 \name{m_ply}
 \alias{m_ply}
@@ -66,10 +66,10 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other multiple arguments input: \code{\link{maply}};
-  \code{\link{mdply}}; \code{\link{mlply}}
+Other multiple arguments input: \code{\link{maply}},
+  \code{\link{mdply}}, \code{\link{mlply}}
 
-Other no output: \code{\link{a_ply}}; \code{\link{d_ply}};
+Other no output: \code{\link{a_ply}}, \code{\link{d_ply}},
   \code{\link{l_ply}}
 }
 \keyword{manip}
diff --git a/man/maply.Rd b/man/maply.Rd
index ef96ad8..2aeedc6 100644
--- a/man/maply.Rd
+++ b/man/maply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/maply.r
 \name{maply}
 \alias{maply}
@@ -73,11 +73,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other array output: \code{\link{aaply}};
-  \code{\link{daply}}; \code{\link{laply}}
+Other array output: \code{\link{aaply}},
+  \code{\link{daply}}, \code{\link{laply}}
 
-Other multiple arguments input: \code{\link{m_ply}};
-  \code{\link{mdply}}; \code{\link{mlply}}
+Other multiple arguments input: \code{\link{m_ply}},
+  \code{\link{mdply}}, \code{\link{mlply}}
 }
 \keyword{manip}
 
diff --git a/man/mapvalues.Rd b/man/mapvalues.Rd
index 942a775..39bc614 100644
--- a/man/mapvalues.Rd
+++ b/man/mapvalues.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/revalue.r
 \name{mapvalues}
 \alias{mapvalues}
@@ -14,7 +14,7 @@ mapvalues(x, from, to, warn_missing = TRUE)
 \item{to}{a vector of replacement values}
 
 \item{warn_missing}{print a message if any of the old values are
-  not actually present in \code{x}}
+not actually present in \code{x}}
 }
 \description{
 Item in \code{x} that match items \code{from} will be replaced by
diff --git a/man/match_df.Rd b/man/match_df.Rd
index e38a173..418c566 100644
--- a/man/match_df.Rd
+++ b/man/match_df.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/match-df.r
 \name{match_df}
 \alias{match_df}
diff --git a/man/mdply.Rd b/man/mdply.Rd
index 79c45a7..007b213 100644
--- a/man/mdply.Rd
+++ b/man/mdply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/mdply.r
 \name{mdply}
 \alias{mdply}
@@ -75,11 +75,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other data frame output: \code{\link{adply}};
-  \code{\link{ddply}}; \code{\link{ldply}}
+Other data frame output: \code{\link{adply}},
+  \code{\link{ddply}}, \code{\link{ldply}}
 
-Other multiple arguments input: \code{\link{m_ply}};
-  \code{\link{maply}}; \code{\link{mlply}}
+Other multiple arguments input: \code{\link{m_ply}},
+  \code{\link{maply}}, \code{\link{mlply}}
 }
 \keyword{manip}
 
diff --git a/man/mlply.Rd b/man/mlply.Rd
index 1467a4b..36628ab 100644
--- a/man/mlply.Rd
+++ b/man/mlply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/mlply.r
 \name{mlply}
 \alias{mlply}
@@ -70,11 +70,11 @@ Hadley Wickham (2011). The Split-Apply-Combine Strategy
   \url{http://www.jstatsoft.org/v40/i01/}.
 }
 \seealso{
-Other list output: \code{\link{alply}};
-  \code{\link{dlply}}; \code{\link{llply}}
+Other list output: \code{\link{alply}},
+  \code{\link{dlply}}, \code{\link{llply}}
 
-Other multiple arguments input: \code{\link{m_ply}};
-  \code{\link{maply}}; \code{\link{mdply}}
+Other multiple arguments input: \code{\link{m_ply}},
+  \code{\link{maply}}, \code{\link{mdply}}
 }
 \keyword{manip}
 
diff --git a/man/mutate.Rd b/man/mutate.Rd
index a4d929d..ad913b4 100644
--- a/man/mutate.Rd
+++ b/man/mutate.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/mutate.r
 \name{mutate}
 \alias{mutate}
diff --git a/man/name_rows.Rd b/man/name_rows.Rd
index 99cf38c..47a596f 100644
--- a/man/name_rows.Rd
+++ b/man/name_rows.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/name-rows.r
 \name{name_rows}
 \alias{name_rows}
diff --git a/man/names.quoted.Rd b/man/names.quoted.Rd
index a9c5870..ab28b25 100644
--- a/man/names.quoted.Rd
+++ b/man/names.quoted.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quote.r
 \name{names.quoted}
 \alias{names.quoted}
diff --git a/man/nunique.Rd b/man/nunique.Rd
index 447cb6d..99c6a67 100644
--- a/man/nunique.Rd
+++ b/man/nunique.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{nunique}
 \alias{nunique}
diff --git a/man/ozone.Rd b/man/ozone.Rd
index 2961c74..cd53595 100644
--- a/man/ozone.Rd
+++ b/man/ozone.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/data.r
 \docType{data}
 \name{ozone}
diff --git a/man/plyr-deprecated.Rd b/man/plyr-deprecated.Rd
index 9ce9ca7..357b8f3 100644
--- a/man/plyr-deprecated.Rd
+++ b/man/plyr-deprecated.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/plyr-deprecated.r
 \name{plyr-deprecated}
 \alias{plyr-deprecated}
diff --git a/man/plyr.Rd b/man/plyr.Rd
index 7e6e1ea..f5e5c6e 100644
--- a/man/plyr.Rd
+++ b/man/plyr.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/plyr.r
 \docType{package}
 \name{plyr}
diff --git a/man/print.quoted.Rd b/man/print.quoted.Rd
index a1101b0..36b7d77 100644
--- a/man/print.quoted.Rd
+++ b/man/print.quoted.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quote.r
 \name{print.quoted}
 \alias{print.quoted}
diff --git a/man/print.split.Rd b/man/print.split.Rd
index cda3ba0..a6efecb 100644
--- a/man/print.split.Rd
+++ b/man/print.split.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/split.r
 \name{print.split}
 \alias{print.split}
diff --git a/man/progress_none.Rd b/man/progress_none.Rd
index a0b1289..3c3e5ed 100644
--- a/man/progress_none.Rd
+++ b/man/progress_none.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress.r
 \name{progress_none}
 \alias{progress_none}
@@ -17,8 +17,8 @@ understand - it does nothing!
 l_ply(1:100, identity, .progress = "none")
 }
 \seealso{
-Other progress bars: \code{\link{progress_text}};
-  \code{\link{progress_time}}; \code{\link{progress_tk}};
+Other progress bars: \code{\link{progress_text}},
+  \code{\link{progress_time}}, \code{\link{progress_tk}},
   \code{\link{progress_win}}
 }
 \keyword{internal}
diff --git a/man/progress_text.Rd b/man/progress_text.Rd
index 6ad2ac9..9e090b3 100644
--- a/man/progress_text.Rd
+++ b/man/progress_text.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress.r
 \name{progress_text}
 \alias{progress_text}
@@ -24,8 +24,8 @@ l_ply(1:100, identity, .progress = "text")
 l_ply(1:100, identity, .progress = progress_text(char = "-"))
 }
 \seealso{
-Other progress bars: \code{\link{progress_none}};
-  \code{\link{progress_time}}; \code{\link{progress_tk}};
+Other progress bars: \code{\link{progress_none}},
+  \code{\link{progress_time}}, \code{\link{progress_tk}},
   \code{\link{progress_win}}
 }
 
diff --git a/man/progress_time.Rd b/man/progress_time.Rd
index 15ce00a..c98233a 100644
--- a/man/progress_time.Rd
+++ b/man/progress_time.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress-time.r
 \name{progress_time}
 \alias{progress_time}
@@ -14,8 +14,8 @@ estimated time remaining and, when finished, total duration.
 l_ply(1:100, function(x) Sys.sleep(.01), .progress = "time")
 }
 \seealso{
-Other progress bars: \code{\link{progress_none}};
-  \code{\link{progress_text}}; \code{\link{progress_tk}};
+Other progress bars: \code{\link{progress_none}},
+  \code{\link{progress_text}}, \code{\link{progress_tk}},
   \code{\link{progress_win}}
 }
 
diff --git a/man/progress_tk.Rd b/man/progress_tk.Rd
index ed1bd64..faaff60 100644
--- a/man/progress_tk.Rd
+++ b/man/progress_tk.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress.r
 \name{progress_tk}
 \alias{progress_tk}
@@ -29,8 +29,8 @@ l_ply(1:100, identity, .progress = progress_tk(label=""))
 \seealso{
 \code{\link[tcltk]{tkProgressBar}} for the function that powers this progress bar
 
-Other progress bars: \code{\link{progress_none}};
-  \code{\link{progress_text}}; \code{\link{progress_time}};
+Other progress bars: \code{\link{progress_none}},
+  \code{\link{progress_text}}, \code{\link{progress_time}},
   \code{\link{progress_win}}
 }
 
diff --git a/man/progress_win.Rd b/man/progress_win.Rd
index 0a96197..6825a56 100644
--- a/man/progress_win.Rd
+++ b/man/progress_win.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/progress.r
 \name{progress_win}
 \alias{progress_win}
@@ -26,8 +26,8 @@ l_ply(1:100, identity, .progress = progress_win(title="Working..."))
 \seealso{
 \code{winProgressBar} for the function that powers this progress bar
 
-Other progress bars: \code{\link{progress_none}};
-  \code{\link{progress_text}}; \code{\link{progress_time}};
+Other progress bars: \code{\link{progress_none}},
+  \code{\link{progress_text}}, \code{\link{progress_time}},
   \code{\link{progress_tk}}
 }
 
diff --git a/man/quickdf.Rd b/man/quickdf.Rd
index 05ae8c6..24e944d 100644
--- a/man/quickdf.Rd
+++ b/man/quickdf.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quickdf.r
 \name{quickdf}
 \alias{quickdf}
diff --git a/man/quoted.Rd b/man/quoted.Rd
index 2d1f8e9..cbd6b72 100644
--- a/man/quoted.Rd
+++ b/man/quoted.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/quote.r
 \name{.}
 \alias{.}
diff --git a/man/r_ply.Rd b/man/r_ply.Rd
index 7a0ab5d..8f4f96a 100644
--- a/man/r_ply.Rd
+++ b/man/r_ply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/r_ply.r
 \name{r_ply}
 \alias{r_ply}
diff --git a/man/raply.Rd b/man/raply.Rd
index 36587c5..e0e9069 100644
--- a/man/raply.Rd
+++ b/man/raply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/raply.r
 \name{raply}
 \alias{raply}
diff --git a/man/rbind.fill.Rd b/man/rbind.fill.Rd
index cd81b70..c66d195 100644
--- a/man/rbind.fill.Rd
+++ b/man/rbind.fill.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rbind-fill.r
 \name{rbind.fill}
 \alias{rbind.fill}
diff --git a/man/rbind.fill.matrix.Rd b/man/rbind.fill.matrix.Rd
index 397813b..f0bd622 100644
--- a/man/rbind.fill.matrix.Rd
+++ b/man/rbind.fill.matrix.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rbind-fill-matrix.r
 \name{rbind.fill.matrix}
 \alias{rbind.fill.matrix}
diff --git a/man/rdply.Rd b/man/rdply.Rd
index ea80a60..b135088 100644
--- a/man/rdply.Rd
+++ b/man/rdply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rdply.r
 \name{rdply}
 \alias{rdply}
diff --git a/man/reduce_dim.Rd b/man/reduce_dim.Rd
index 3f7be63..19e96da 100644
--- a/man/reduce_dim.Rd
+++ b/man/reduce_dim.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/dimensions.r
 \name{reduce_dim}
 \alias{reduce_dim}
diff --git a/man/rename.Rd b/man/rename.Rd
index 322d5cc..76428f5 100644
--- a/man/rename.Rd
+++ b/man/rename.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rename.r
 \name{rename}
 \alias{rename}
diff --git a/man/revalue.Rd b/man/revalue.Rd
index 97e2bdb..7eae875 100644
--- a/man/revalue.Rd
+++ b/man/revalue.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/revalue.r
 \name{revalue}
 \alias{revalue}
@@ -13,7 +13,7 @@ revalue(x, replace = NULL, warn_missing = TRUE)
 old values as names.}
 
 \item{warn_missing}{print a message if any of the old values are
-  not actually present in \code{x}}
+not actually present in \code{x}}
 }
 \description{
 If \code{x} is a factor, the named levels of the factor will be
diff --git a/man/rlply.Rd b/man/rlply.Rd
index 96f23d0..6107aad 100644
--- a/man/rlply.Rd
+++ b/man/rlply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rlply.r
 \name{rlply}
 \alias{rlply}
diff --git a/man/round_any.Rd b/man/round_any.Rd
index 7fff842..e0a25c0 100644
--- a/man/round_any.Rd
+++ b/man/round_any.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/round-any.r
 \name{round_any}
 \alias{round_any}
diff --git a/man/splat.Rd b/man/splat.Rd
index b3943be..8174847 100644
--- a/man/splat.Rd
+++ b/man/splat.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/splat.r
 \name{splat}
 \alias{splat}
diff --git a/man/split_indices.Rd b/man/split_indices.Rd
index 545132f..c1d0f2b 100644
--- a/man/split_indices.Rd
+++ b/man/split_indices.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/RcppExports.R
 \name{split_indices}
 \alias{split_indices}
diff --git a/man/split_labels.Rd b/man/split_labels.Rd
index 6f8ed38..fa02bb7 100644
--- a/man/split_labels.Rd
+++ b/man/split_labels.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/splitter-d.r
 \name{split_labels}
 \alias{split_labels}
diff --git a/man/splitter_a.Rd b/man/splitter_a.Rd
index 0e039b0..a10ea7e 100644
--- a/man/splitter_a.Rd
+++ b/man/splitter_a.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/splitter-a.r
 \name{splitter_a}
 \alias{splitter_a}
diff --git a/man/splitter_d.Rd b/man/splitter_d.Rd
index 5873044..7bcdb5a 100644
--- a/man/splitter_d.Rd
+++ b/man/splitter_d.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/splitter-d.r
 \name{splitter_d}
 \alias{splitter_d}
diff --git a/man/strip_splits.Rd b/man/strip_splits.Rd
index ec68d18..81d25b6 100644
--- a/man/strip_splits.Rd
+++ b/man/strip_splits.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/strip-splits.r
 \name{strip_splits}
 \alias{strip_splits}
diff --git a/man/summarise.Rd b/man/summarise.Rd
index fcad932..415a373 100644
--- a/man/summarise.Rd
+++ b/man/summarise.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/summarise.r
 \name{summarise}
 \alias{summarise}
diff --git a/man/take.Rd b/man/take.Rd
index 37286a7..87f6699 100644
--- a/man/take.Rd
+++ b/man/take.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/take.r
 \name{take}
 \alias{take}
diff --git a/man/true.Rd b/man/true.Rd
index 52fc7b8..4082682 100644
--- a/man/true.Rd
+++ b/man/true.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{true}
 \alias{true}
diff --git a/man/try_default.Rd b/man/try_default.Rd
index af5ae64..bd5d2c1 100644
--- a/man/try_default.Rd
+++ b/man/try_default.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/try.r
 \name{try_default}
 \alias{tryNULL}
diff --git a/man/tryapply.Rd b/man/tryapply.Rd
index a9bfa98..d8b9066 100644
--- a/man/tryapply.Rd
+++ b/man/tryapply.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/try.r
 \name{tryapply}
 \alias{tryapply}
diff --git a/man/unrowname.Rd b/man/unrowname.Rd
index 7215172..250ee8e 100644
--- a/man/unrowname.Rd
+++ b/man/unrowname.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/utils.r
 \name{unrowname}
 \alias{unrowname}
diff --git a/man/vaggregate.Rd b/man/vaggregate.Rd
index a534ac0..1e32360 100644
--- a/man/vaggregate.Rd
+++ b/man/vaggregate.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.1.1): do not edit by hand
+% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/vaggregate.r
 \name{vaggregate}
 \alias{vaggregate}
@@ -33,7 +33,7 @@ because it avoids making a copy of the data.
 }
 \examples{
 # Some examples of use borrowed from ?tapply
-n <- 17; fac <- factor(rep(1:3, length = n), levels = 1:5)
+n <- 17; fac <- factor(rep(1:3, length.out = n), levels = 1:5)
 table(fac)
 vaggregate(1:n, fac, sum)
 vaggregate(1:n, fac, sum, .default = NA_integer_)
diff --git a/src/loop_apply.c b/src/loop_apply.c
index 9938a68..01fdff8 100644
--- a/src/loop_apply.c
+++ b/src/loop_apply.c
@@ -1,7 +1,7 @@
 #include <R.h>
 #include <Rdefines.h>
 
-SEXP loop_apply(SEXP n, SEXP f, SEXP rho) {
+SEXP loop_apply_(SEXP n, SEXP f, SEXP rho) {
   if(!isFunction(f)) error("'f' must be a function");
   if(!isEnvironment(rho)) error("'rho' should be an environment");
 
diff --git a/tests/testthat/test-array.r b/tests/testthat/test-array.r
index 368779e..766b143 100644
--- a/tests/testthat/test-array.r
+++ b/tests/testthat/test-array.r
@@ -186,7 +186,6 @@ test_that("no support for duplicate names (#211)", {
     setNames(x, letters[c(1:9,2)])
   }
   B <- list(X=n(1:10), Y=n(11:20), Z=n(21:30))
-
   expect_warning(laply(B, identity), "Duplicate names")
 
   AB <- c('a', 'b', 'a', 'b')
@@ -194,6 +193,10 @@ test_that("no support for duplicate names (#211)", {
   ar <-  array(rep(rep(rep(1:4, 4), 4), 2), dim=c(4, 4, 2), dimnames=list(ABCD, ABCD, c('i', 'ii')))
   ar[,,2] <- ar[,,2]+4
   dimnames(ar)[1:2] <- list(AB, AB)
-  expect_warning(aaply(ar, 3, identity), "Duplicate names")
 
+  if (getRversion() >= "3.4.0") {
+    expect_error(aaply(ar, 3, identity), "duplicated")
+  } else {
+    expect_warning(aaply(ar, 3, identity), "Duplicate names")
+  }
 })
diff --git a/tests/testthat/test-parallel.r b/tests/testthat/test-parallel.r
index 106c5b0..250cbfb 100644
--- a/tests/testthat/test-parallel.r
+++ b/tests/testthat/test-parallel.r
@@ -9,13 +9,13 @@ with_parallel <- function(code) {
   code
 }
 
-test_that("l_ply respects .parallel", {
-  with_parallel(
-    expect_that(
-      l_ply(c(0.1, 0.1), Sys.sleep, .parallel = TRUE),
-      takes_less_than(0.18))
-  )
-})
+# test_that("l_ply respects .parallel", {
+#   with_parallel(
+#     expect_that(
+#       l_ply(c(0.1, 0.1), Sys.sleep, .parallel = TRUE),
+#       takes_less_than(0.18))
+#   )
+# })
 
 test_that("l_ply + .parallel complains about invalid arguments", {
   with_parallel({
diff --git a/tests/testthat/test-rbind.r b/tests/testthat/test-rbind.r
index 6309510..3a6ca80 100644
--- a/tests/testthat/test-rbind.r
+++ b/tests/testthat/test-rbind.r
@@ -279,7 +279,7 @@ expect_linear_enough <- function(timings, threshold=0.1) {
   #expect that no more than `threshold` of a `size` input's runtime is
   #accounted for by quadratic behavior
   model <- lm(I(user.self / size) ~ size, timings)
-  expect_less_than(threshold, summary(model)$coefficients[2,4])
+  expect_lt(threshold, summary(model)$coefficients[2,4])
 }
 
 test_that("rbind.fill performance linear", {
diff --git a/tests/testthat/test-revalue.r b/tests/testthat/test-revalue.r
index dce10c0..12aecb1 100644
--- a/tests/testthat/test-revalue.r
+++ b/tests/testthat/test-revalue.r
@@ -121,17 +121,17 @@ test_that("revalue and mapvalues accept empty vectors and NULL", {
 
 test_that("revalue and mapvalues respect warn_missing", {
   # revalue
-  expect_that(revalue("a", c("a"="A")), not(shows_message()))
-  expect_that(revalue("a", c("b"="B"), warn_missing=TRUE), shows_message())
-  expect_that(revalue("a", c("b"="B"), warn_missing=FALSE), not(shows_message()))
+  expect_message(revalue("a", c("a"="A")), NA)
+  expect_message(revalue("a", c("b"="B"), warn_missing=TRUE))
+  expect_message(revalue("a", c("b"="B"), warn_missing=FALSE), NA)
 
   # mapvalues
-  expect_that(mapvalues("a", "a", "A"), not(shows_message()))
-  expect_that(mapvalues("a", "b", "B", warn_missing=TRUE), shows_message())
-  expect_that(mapvalues("a", "b", "B", warn_missing=FALSE), not(shows_message()))
+  expect_message(mapvalues("a", "a", "A"), NA)
+  expect_message(mapvalues("a", "b", "B", warn_missing=TRUE))
+  expect_message(mapvalues("a", "b", "B", warn_missing=FALSE), NA)
 
   # mapvalues with factors
-  expect_that(mapvalues(factor("a"), "a", "A"), not(shows_message()))
-  expect_that(mapvalues(factor("a"), "b", "B", warn_missing=TRUE), shows_message())
-  expect_that(mapvalues(factor("a"), "b", "B", warn_missing=FALSE), not(shows_message()))
+  expect_message(mapvalues(factor("a"), "a", "A"), NA)
+  expect_message(mapvalues(factor("a"), "b", "B", warn_missing=TRUE))
+  expect_message(mapvalues(factor("a"), "b", "B", warn_missing=FALSE), NA)
 })

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