[med-svn] [nanopolish] 03/03: Make sure abs() gets int arguments

[Andreas Tille]

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tille pushed a commit to branch master
in repository nanopolish.

commit fbe48f94c8acb5c28fb13ecd65c2f675c0b36813
Author: Andreas Tille <tille at debian.org>
Date:   Thu Aug 31 23:44:46 2017 +0200

    Make sure abs() gets int arguments
---
 debian/changelog           |  2 ++
 debian/patches/gcc-7.patch | 16 ++++++++++++++++
 debian/patches/series      |  1 +
 3 files changed, 19 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index f7b8c32..51dbc2b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,8 @@ nanopolish (0.5.0-2) UNRELEASED; urgency=medium
   * Team upload
   * debhelper 10
   * Standards-Version: 4.1.0 (no changes needed)
+  * Make sure abs() gets int arguments
+    Closes: #853568
 
  -- Andreas Tille <tille at debian.org>  Thu, 31 Aug 2017 23:33:00 +0200
 
diff --git a/debian/patches/gcc-7.patch b/debian/patches/gcc-7.patch
new file mode 100644
index 0000000..b7fa956
--- /dev/null
+++ b/debian/patches/gcc-7.patch
@@ -0,0 +1,16 @@
+Autor: Andreas Tille <tille at debian.org>
+last-Update: Thu, 31 Aug 2017 23:33:00 +0200
+Bug-Debian: https://bugs.debian.org/853568
+Description: Make sure abs() gets int arguments
+
+--- a/src/alignment/nanopolish_eventalign.cpp
++++ b/src/alignment/nanopolish_eventalign.cpp
+@@ -679,7 +679,7 @@ std::vector<EventAlignment> align_read_t
+         // over very large deletions wrt to the reference. The effect of this
+         // is that we can get segments that have very few alignable events. We
+         // just stop processing them for now
+-        if(abs(input.event_start_idx - input.event_stop_idx) < 2)
++        if(abs(int(input.event_start_idx) - int(input.event_stop_idx)) < 2)
+             break;
+ 
+         input.strand = params.strand_idx;
diff --git a/debian/patches/series b/debian/patches/series
index d66d531..b30a50b 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -5,3 +5,4 @@ add-shebang-to-script.patch
 fix-ftbfs-with-gcc6.patch
 reproducible.patch
 fast5-0.5.6.patch
+gcc-7.patch

-- 
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