[med-svn] [soapaligner] 08/10: Update upstream source from tag 'upstream/2.20'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository soapaligner.

commit 788833f1e81bda9ceaa127d31315c6c4d4483e28
Merge: 5712cdf 7495091
Author: Andreas Tille <tille at debian.org>
Date:   Thu Dec 28 08:06:56 2017 +0100

    Update upstream source from tag 'upstream/2.20'
    
    Update to upstream version '2.20'
    with Debian dir 2e9f97924b31dd80564dd6f65fabb8a5cf6c7b5e

 BWT.c             | 1459 +++++++++++++++++++++++++++++++++++++++++++++++++++++
 BWT.h             |  268 ++++++++++
 BWTAln.c          |  919 +++++++++++++++++++++++++++++++++
 BWTAln.h          |   39 ++
 ChangLogCode.Apr1 |   64 +++
 ChangeLog1        |   16 +
 DNACount.c        | 1159 ++++++++++++++++++++++++++++++++++++++++++
 DNACount.h        |   91 ++++
 GPLv3             |  674 +++++++++++++++++++++++++
 HSP.c             |  339 +++++++++++++
 HSP.h             |  126 +++++
 INSTALL           |   15 +
 Makefile          |   65 +++
 Match.c           |  393 +++++++++++++++
 Match.h           |  138 +++++
 MemManager.c      | 1093 +++++++++++++++++++++++++++++++++++++++
 MemManager.h      |  151 ++++++
 MiscUtilities.c   | 1368 +++++++++++++++++++++++++++++++++++++++++++++++++
 MiscUtilities.h   |   83 +++
 NEWS              |    6 +
 PairMatch.c       |  483 ++++++++++++++++++
 SeqIO.c           |  201 ++++++++
 SeqIO.h           |   42 ++
 TextConverter.c   |  917 +++++++++++++++++++++++++++++++++
 TextConverter.h   |   93 ++++
 Timing.c          |  169 +++++++
 Timing.h          |   37 ++
 TypeNLimit.h      |   78 +++
 extratools.c      |  227 +++++++++
 extratools.h      |  165 ++++++
 kstring.c         |   35 ++
 kstring.h         |   46 ++
 r250.c            |  128 +++++
 r250.h            |   31 ++
 soap.1            |  142 ++++++
 soap.c            |  391 ++++++++++++++
 soap.h            |   24 +
 soap.man          |  145 ++++++
 soapio.c          |  302 +++++++++++
 soapio.h          |   68 +++
 stdaln.c          |  856 +++++++++++++++++++++++++++++++
 stdaln.h          |  146 ++++++
 42 files changed, 13192 insertions(+)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/soapaligner.git