[med-svn] [unc-fish] 05/12: Add manpage

[Andreas Tille]

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tille pushed a commit to branch master
in repository unc-fish.

commit d5e5ab625f16e7ff564d9706b3301d1411a723a4
Author: Andreas Tille <tille at debian.org>
Date:   Fri Feb 14 13:44:27 2014 +0000

    Add manpage
---
 debian/createmanpages |  7 +++++++
 debian/manpages       |  1 +
 debian/unc-fish.1     | 42 ++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 50 insertions(+)

diff --git a/debian/createmanpages b/debian/createmanpages
new file mode 100755
index 0000000..50e5132
--- /dev/null
+++ b/debian/createmanpages
@@ -0,0 +1,7 @@
+#!/bin/sh
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//'`
+MANDIR=debian
+mkdir -p $MANDIR
+help2man --no-info --no-discard-stderr \
+         --name='Fast Identification of Segmental Homology' \
+            --version-string="$VERSION" unc-fish > $MANDIR/unc-fish.1
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..0f65186
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/*.1
diff --git a/debian/unc-fish.1 b/debian/unc-fish.1
new file mode 100644
index 0000000..01e3ef0
--- /dev/null
+++ b/debian/unc-fish.1
@@ -0,0 +1,42 @@
+.TH UNC-FISH "1" "February 2014" "unc-fish 1.0+dfsg" "User Commands"
+.SH NAME
+unc-fish \- Fast Identification of Segmental Homology
+.SH SYNOPSIS
+.B fish
+[\-f Control_File |control.txt]
+.SH DESCRIPTION
+The program unc-fish was originalled named FISH and is a
+software for identifying regions of common ancestry between
+genome maps.  Fast identification and statistical evaluation of
+segmental homologies in comparative maps.
+.SH OPTIONS
+.TP
+\fI\-b\fR Block_File
+.TP
+\fI\-g\fR Grid_File
+.TP
+\fI\-C\fR Contig_File
+.TP
+\fI\-D\fR Max_Distance [default=10]
+.TP
+\fI\-S\fR Min_Score [default=200]
+.TP
+\fI\-T\fR Threshold [default=.05]
+.TP
+\fI\-m\fR Min_Block_Size [default=3]
+.TP
+\fI\-off\fR Turn off Detandemize
+.TP
+\fI\-h\fR help
+.TP
+\fI\-H\fR Top_Hits [default=5]
+.TP
+\fI\-A\fR Average_Score Selection [default=Max_Score]
+.TP
+\fI\-p\fR BLOCK_PROB [default=.001]
+.TP
+\fI\-B\fR Block_File_Simple
+.TP
+\fI\-q\fR QUIET_MODE
+.TP
+\fI\-t\fR Print timing

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