[med-svn] [diamond-aligner] branch upstream updated (982daa6 -> b84b9ff)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository diamond-aligner.

      from  982daa6   New upstream version 0.8.34+dfsg
       new  b84b9ff   New upstream version 0.8.35+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.rst                           |  2 +-
 src/ChangeLog                        |  5 +++++
 src/basic/basic.cpp                  |  2 +-
 src/basic/const.h                    |  2 +-
 src/basic/shape.h                    |  1 +
 src/data/load_seqs.h                 |  2 +-
 src/data/reference.cpp               | 41 ++++++++++++++++++++++--------------
 src/data/reference.h                 | 12 ++++++-----
 src/data/seed_histogram.h            |  8 +++----
 src/data/string_set.h                |  2 +-
 src/extra/model_sim.cpp              |  5 +++--
 src/extra/opt.cpp                    | 17 ++++++++++++++-
 src/extra/roc.cpp                    |  2 +-
 src/output/blast_pairwise_format.cpp |  4 ++--
 src/util/binary_file.h               |  5 +++++
 src/util/text_buffer.h               |  2 +-
 src/util/util.h                      | 10 +++------
 17 files changed, 78 insertions(+), 44 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/diamond-aligner.git