[med-svn] r23672 - trunk/packages/bowtie/trunk/debian/upstream

[Andreas Tille]

Author: tille
Date: 2017-02-07 14:39:04 +0000 (Tue, 07 Feb 2017)
New Revision: 23672

Modified:
   trunk/packages/bowtie/trunk/debian/upstream/edam
Log:
Fix bloody wrong syntax of yaml file - could you please check via yamllint first


Modified: trunk/packages/bowtie/trunk/debian/upstream/edam
===================================================================
--- trunk/packages/bowtie/trunk/debian/upstream/edam	2017-02-07 12:55:33 UTC (rev 23671)
+++ trunk/packages/bowtie/trunk/debian/upstream/edam	2017-02-07 14:39:04 UTC (rev 23672)
@@ -1,48 +1,63 @@
+---
 ontology: EDAM (1.13)
 topic: topic_0622 Genomics
-scope: summary
- function: operation_3211 Genome indexing
- function: operation_0292 Sequence alignment generation
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1929 FASTA
- input: format_1930 FASTQ
- output: data_1383 Sequence alignment (nucleic acid)
- output: format_2573 SAM
-scope: bowtie-build
- function: operation_3212 Genome indexing (Burrows-Wheeler)
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1929 FASTA
- output: data_3210 Genome index
- output: ??? Bowtie index format EBWT
- output: ??? Bowtie long index format EBTWL
-scope: bowtie-inspect
- function: operation_1813 Sequence retrieval
- function: operation_0304 Metadata retrieval
- function: operation_0228 Data index analysis
- input: data_3210 Genome index
- input: ??? Bowtie index format EBWT
- input: ??? Bowtie long index format EBTWL
- output: data_2975 Nucleic acid sequence (raw)
- output: format_1929 FASTA
- output: format_1964 plain text format (unformatted)
-scope: bowtie
- function: operation_0350 Sequence database search (by sequence using word-based methods)
- function: operation_0292 Sequence alignment generation
- input: data_3210 Genome index
- input: data_2975 Nucleic acid sequence (raw)
- input: format_1964 plain text format (unformatted)
- input: format_1929 FASTA
- input: format_1930 FASTQ
- output: data_1383 Sequence alignment (nucleic acid)
- output: data_0867 Sequence alignment report
- output: format_2573 SAM
- output: ??? Bowtie alignment report format
-
-topic: topic_0622 Genomics
-function: operation_3212 Genome indexing (Burrows-Wheeler)
-function: operation_0292 Sequence alignment generation
-input: data_2975 Nucleic acid sequence (raw)
-input: format_1929 FASTA
-input: format_1930 FASTQ
-output: data_1383 Sequence alignment (nucleic acid)
-output: format_2573 SAM
+scope:
+ - name: summary
+   function:
+    - operation_3211 Genome indexing
+    - operation_0292 Sequence alignment generation
+   input:
+    - data_2975 Nucleic acid sequence (raw)
+    - format_1929 FASTA
+    - format_1930 FASTQ
+   output:
+    - data_1383 Sequence alignment (nucleic acid)
+    - format_2573 SAM
+ - name: bowtie-build
+   function: operation_3212 Genome indexing (Burrows-Wheeler)
+   input:
+    - data_2975 Nucleic acid sequence (raw)
+    - format_1929 FASTA
+   output:
+    - data_3210 Genome index
+    - ??? Bowtie index format EBWT
+    - ??? Bowtie long index format EBTWL
+ - name: bowtie-inspect
+   function:
+    - operation_1813 Sequence retrieval
+    - operation_0304 Metadata retrieval
+    - operation_0228 Data index analysis
+   input:
+    - data_3210 Genome index
+    - ??? Bowtie index format EBWT
+    - ??? Bowtie long index format EBTWL
+   output:
+    - data_2975 Nucleic acid sequence (raw)
+    - format_1929 FASTA
+    - format_1964 plain text format (unformatted)
+ - name: bowtie
+   function:
+    - operation_0350 Sequence database search (by sequence using word-based methods)
+    - operation_0292 Sequence alignment generation
+   input:
+    - data_3210 Genome index
+    - data_2975 Nucleic acid sequence (raw)
+    - format_1964 plain text format (unformatted)
+    - format_1929 FASTA
+    - format_1930 FASTQ
+   output:
+    - data_1383 Sequence alignment (nucleic acid)
+    - data_0867 Sequence alignment report
+    - format_2573 SAM
+    - ??? Bowtie alignment report format
+ - name: FIXME remainings of blody syntax errors
+   function:
+    - operation_3212 Genome indexing (Burrows-Wheeler)
+    - operation_0292 Sequence alignment generation
+   input:
+    - data_2975 Nucleic acid sequence (raw)
+    - format_1929 FASTA
+    - format_1930 FASTQ
+   output:
+    - data_1383 Sequence alignment (nucleic acid)
+    - format_2573 SAM