[med-svn] [r-cran-bio3d] 02/06: Updated version 2.3-3 from 'upstream/2.3-3'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-bio3d.

commit 50061da9c6585874a02a75feafc30e4d6f50eb77
Merge: 501a405 dc60a34
Author: Andreas Tille <tille at debian.org>
Date:   Fri Sep 22 23:30:58 2017 +0200

    Updated version 2.3-3 from 'upstream/2.3-3'
    
    with Debian dir bca6fe3f1189ed4925b49f8d671bb4f951e77033

 DESCRIPTION                   |   6 +-
 MD5                           |  71 ++++++++--------
 R/atom.select.pdb.R           |  14 +++-
 R/atom2ele.R                  |  65 ++++++++++++--
 R/cnapath.R                   |   4 +-
 R/community.aln.R             |   6 ++
 R/get.pdb.R                   |  14 ++--
 R/hmmer.R                     |  10 +++
 R/pdbs2sse.R                  |  42 ++++++++--
 R/plot.blast.R                |   2 +-
 R/plot.dmat.R                 |  14 ++--
 R/plot.matrix.loadings.R      |  86 ++++++++++---------
 R/plot.pca.scree.R            |   2 +-
 R/read.cif.R                  |   2 +-
 R/read.pdb.R                  |   2 +-
 R/uniprot.R                   |  26 +++++-
 build/vignette.rds            | Bin 203 -> 203 bytes
 inst/doc/bio3d_vignettes.html | 191 ++++++++++++++++++++++++++++++++++--------
 man/atom.select.Rd            |   4 +-
 man/atom2ele.Rd               |  16 ++--
 man/bio3d.package.Rd          |   4 +-
 man/cna.Rd                    |   6 +-
 man/cnapath.Rd                |   6 ++
 man/community.aln.Rd          |   7 +-
 man/community.tree.Rd         |   5 ++
 man/identify.cna.Rd           |   5 ++
 man/layout.cna.Rd             |   5 ++
 man/mustang.Rd                |   6 ++
 man/network.amendment.Rd      |   7 +-
 man/plot.cna.Rd               |  11 +--
 man/plot.matrix.loadings.Rd   |   4 +-
 man/plot.pca.Rd               |   2 +-
 man/print.cna.Rd              |   5 ++
 man/prune.cna.Rd              |   5 ++
 man/vmd.cna.Rd                |   5 ++
 src/init.c                    |  28 +++++++
 src/read_cif.cpp              |  14 ++--
 37 files changed, 522 insertions(+), 180 deletions(-)

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