[med-svn] [r-cran-bold] 01/12: Inject r-cran-bold
Andreas Tille
tille at debian.org
Sun Oct 1 20:38:05 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-bold.
commit f4d90ff36e9df4bff30ce486ad825ce14543ff1a
Author: Andreas Tille <tille at debian.org>
Date: Wed Mar 23 08:40:05 2016 +0000
Inject r-cran-bold
---
debian/README.test | 9 +++++++++
debian/changelog | 6 ++++++
debian/compat | 1 +
debian/control | 36 ++++++++++++++++++++++++++++++++++++
debian/copyright | 31 +++++++++++++++++++++++++++++++
debian/docs | 3 +++
debian/rules | 3 +++
debian/source/format | 1 +
debian/tests/control | 3 +++
debian/tests/run-unit-test | 12 ++++++++++++
debian/watch | 3 +++
11 files changed, 108 insertions(+)
diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..4fe93f7
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,9 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+cd tests
+LC_ALL=C R --no-save < test-all.R
+
+in order to confirm its integrity.
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..9a49ac8
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,6 @@
+r-cran-bold (0.3.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #???)
+ TODO: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-httr/trunk/
+
+ -- Andreas Tille <tille at debian.org> Tue, 22 Mar 2016 21:32:09 +0100
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..3decbf5
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,36 @@
+Source: r-cran-bold
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ cdbs,
+ r-base-dev,
+ r-cran-xml,
+ r-cran-stringr,
+ r-cran-assertthat,
+ r-cran-jsonlite,
+ r-cran-reshape,
+ r-cran-plyr
+# r-cran-httr
+Standards-Version: 3.9.7
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-bold/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-bold/trunk/
+Homepage: https://cran.r-project.org/web/packages/bold/
+
+Package: r-cran-bold
+Architecture: all
+Depends: ${misc:Depends},
+ ${R:Depends},
+ r-cran-xml,
+ r-cran-stringr,
+ r-cran-assertthat,
+ r-cran-jsonlite,
+ r-cran-reshape,
+ r-cran-plyr
+Description: GNU R interface to Bold Systems for genetic barcode data
+ A programmatic interface to the Web Service methods provided by Bold
+ Systems for genetic barcode data. Functions include methods for
+ searching by sequences by taxonomic names, ids, collectors, and
+ institutions; as well as a function for searching for specimens, and
+ downloading trace files.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..7e70062
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,31 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Scott Chamberlain <myrmecocystus at gmail.com>
+Source: https://cran.r-project.org/web/packages/taxize/
+
+Files: *
+Copyright: 2013-2016 Scott Chamberlain <myrmecocystus at gmail.com>
+License: MIT
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..960011c
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..2fbba2d
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/R/debian/r-cran.mk
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..b044b0c
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..90e00dd
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,12 @@
+#!/bin/sh -e
+
+oname=bold
+pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+LC_ALL=C R --no-save < test-all.R
+rm -fr $ADTTMP/*
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..15076d6
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/bold_([-0-9\.]*).tar.gz
+
--
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