[med-svn] [r-bioc-genefilter] 06/14: New upstream version, add autopkgtest

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-genefilter.

commit 1cc2376459ccf34046b5effb94c4b8acce3bbafc
Author: Andreas Tille <tille at debian.org>
Date:   Sun Nov 8 19:43:11 2015 +0000

    New upstream version, add autopkgtest
---
 debian/README.test         |  8 ++++++++
 debian/changelog           |  7 +++++++
 debian/examples            |  1 +
 debian/tests/control       |  3 +++
 debian/tests/run-unit-test | 18 ++++++++++++++++++
 debian/watch               |  2 +-
 6 files changed, 38 insertions(+), 1 deletion(-)

diff --git a/debian/README.test b/debian/README.test
new file mode 100644
index 0000000..ef34ccc
--- /dev/null
+++ b/debian/README.test
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+   sh run-unit-test
+
+in this directory.
diff --git a/debian/changelog b/debian/changelog
index 703d921..4d21995 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+r-bioc-genefilter (1.52.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Add autopkgtest
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Nov 2015 20:33:36 +0100
+
 r-bioc-genefilter (1.50.0-1) unstable; urgency=medium
 
   * Initial release (closes: #794279)
diff --git a/debian/examples b/debian/examples
new file mode 100644
index 0000000..18244c8
--- /dev/null
+++ b/debian/examples
@@ -0,0 +1 @@
+vignettes
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..d2aa55a
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..53182d6
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,18 @@
+#!/bin/sh -e
+oname=genefilter
+pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
+
+if [ "$ADTTMP" = "" ] ; then
+  ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+fi
+cd $ADTTMP
+cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for rnw in `ls *.[rRS]nw` ; do
+rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
+R --no-save <<EOT
+  Stangle("$rnw")
+  source("$rfile", echo=TRUE)
+EOT
+done
+rm -rf *
diff --git a/debian/watch b/debian/watch
index a5eb4b4..c05be04 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,3 +1,3 @@
 version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/genefilter.html .*/genefilter_([\d\.]+)\.tar\.gz

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