[med-svn] [r-bioc-genefilter] 08/14: New upstream version, add r-cran-class to Suggests and autopkgtest Depends

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-genefilter.

commit 2ca2bc7e6f1676feb9d56b14ca13a4bb28ef17e9
Author: Andreas Tille <tille at debian.org>
Date:   Wed Apr 27 18:31:27 2016 +0000

    New upstream version, add r-cran-class to Suggests and autopkgtest Depends
---
 debian/changelog                            |  8 ++++++
 debian/control                              |  3 ++-
 debian/patches/gf_distance_definition.patch | 41 -----------------------------
 debian/patches/series                       |  1 -
 debian/tests/control                        |  2 +-
 5 files changed, 11 insertions(+), 44 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 896e086..cfea456 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+r-bioc-genefilter (1.52.1-1) unstable; urgency=medium
+
+  * New upstream version (patch applied upstream)
+  * cme fix dpkg-control
+  * Add r-cran-class to Suggests and autopkgtest Depends
+
+ -- Andreas Tille <tille at debian.org>  Wed, 27 Apr 2016 20:23:02 +0200
+
 r-bioc-genefilter (1.52.0-2) unstable; urgency=medium
 
   * Apply upstream patch to fix conflicting declarations of function gf_distance
diff --git a/debian/control b/debian/control
index 270f537..e363b53 100644
--- a/debian/control
+++ b/debian/control
@@ -9,7 +9,7 @@ Build-Depends: debhelper (>= 9),
                r-bioc-annotationdbi,
                r-bioc-annotate,
                r-cran-survival
-Standards-Version: 3.9.6
+Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genefilter/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genefilter/trunk/
 Homepage: http://bioconductor.org/packages/release/bioc/html/genefilter.html
@@ -22,6 +22,7 @@ Depends: ${R:Depends},
          r-bioc-annotationdbi,
          r-bioc-annotate,
          r-cran-survival
+Suggests: r-cran-class
 Description: methods for filtering genes from microarray experiments
  This BioConductor module provides methods for filtering genes from microarray
  experiments.  It contains some basic functions for filtering genes.
diff --git a/debian/patches/gf_distance_definition.patch b/debian/patches/gf_distance_definition.patch
deleted file mode 100644
index 604f095..0000000
--- a/debian/patches/gf_distance_definition.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-Origin: upstream, https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/genefilter r112947
-Author:"Morgan, Martin" <Martin.Morgan at RoswellPark.org>
-Last-Update: 2016-01-27 16:59:31
-Bug-Debian: https://bugs.debian.org/812767
-Description: bugfix: rationalize C signatures to gf_distance
-
-
---- a/src/nd.c
-+++ b/src/nd.c
-@@ -26,17 +26,14 @@
- #if defined(USING_R) /*( R-specific stuff */
- 
- #define  S_CDECL
--typedef int RSInt;
--
- #ifdef HAVE_CONFIG_H
- # include <config.h>
- #endif
- /* we need this first to get the right options for math.h */
- #include <R_ext/Arith.h>
- 
--#include <R.h>
-+#include "genefilter.h"
- #include <Rmath.h>
--#include <Rinternals.h>
- #include "R_ext/Error.h"
- #include "R_ext/Applic.h" 
- 
---- a/src/genefilter.h
-+++ b/src/genefilter.h
-@@ -2,5 +2,8 @@
- #include <R.h>
- #include <Rinternals.h>
- 
--void gf_distance(double *x, double *kval, int *nr, int *nc, double *d, 
--		 int *diag, int *method);
-+typedef int RSInt;
-+
-+void gf_distance(double *x, RSInt *nr, RSInt *nc, RSInt *g, double *d, 
-+		 RSInt *iRow, RSInt *nInterest, RSInt *nResults, 
-+		 RSInt *method, double *wval);
diff --git a/debian/patches/series b/debian/patches/series
deleted file mode 100644
index c25ae49..0000000
--- a/debian/patches/series
+++ /dev/null
@@ -1 +0,0 @@
-gf_distance_definition.patch
diff --git a/debian/tests/control b/debian/tests/control
index d2aa55a..5f98003 100644
--- a/debian/tests/control
+++ b/debian/tests/control
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @
+Depends: @, r-cran-class
 Restrictions: allow-stderr

-- 
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