[med-svn] [indelible] 02/03: Fix some spelling issues

[Andreas Tille]

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tille pushed a commit to branch master
in repository indelible.

commit c27931d1890c73782aa4a491723a27de630c305f
Author: Andreas Tille <tille at debian.org>
Date:   Tue Oct 3 08:19:32 2017 +0200

    Fix some spelling issues
---
 debian/changelog                   |  1 +
 debian/patches/0006-spelling.patch | 57 ++++++++++++++++++++++++++++++++++++++
 debian/patches/series              |  1 +
 3 files changed, 59 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index f03becd..ccf0f7f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,6 +5,7 @@ indelible (1.03-3) UNRELEASED; urgency=medium
   * Normalise Vcs fields using cme fix dpkg-control
   * Add fake watch file
   * debhelper 10
+  * Fix some spelling issues
 
   [ Steffen Moeller ]
   * Added reference to OMICtools
diff --git a/debian/patches/0006-spelling.patch b/debian/patches/0006-spelling.patch
new file mode 100644
index 0000000..848c274
--- /dev/null
+++ b/debian/patches/0006-spelling.patch
@@ -0,0 +1,57 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 03 Oct 2017 08:18:07 +0200
+Description: Fix some spelling issues
+
+--- a/src/control.cpp
++++ b/src/control.cpp
+@@ -1947,7 +1947,7 @@ int dealwithsites(vector<string> &block)
+ 		}
+ 
+ 		if(a[0]!='C' || a[1]!='[' || a[a.size()-1]!=']') 
+-		{controlerrorprint2("[SITES]", name, a, "Only one statement after the sites class name means you are specifiying\na codon sites class and you must use the following notation:\nC[mymodelname1,mymodelname2,mymodelname3] or\nC[mybranchclass1,mybranchclass2,mybranchclass3]",""); {if(breakonerror) return -1;}  }
++		{controlerrorprint2("[SITES]", name, a, "Only one statement after the sites class name means you are specifying\na codon sites class and you must use the following notation:\nC[mymodelname1,mymodelname2,mymodelname3] or\nC[mybranchclass1,mybranchclass2,mybranchclass3]",""); {if(breakonerror) return -1;}  }
+ 		
+ 		
+ 		
+@@ -2107,7 +2107,7 @@ int dealwithbranches(vector<string> &blo
+ 	}
+ 			
+ 	if(mybracketleft!=mybracketright) 	
+-	{treeerror=true; controlerrorprint2("[BRANCHES]", name, "", "Number of parantheses in guide tree do not match.",""); {if(breakonerror) return -1;}  }
++	{treeerror=true; controlerrorprint2("[BRANCHES]", name, "", "Number of parentheses in guide tree do not match.",""); {if(breakonerror) return -1;}  }
+ 
+ 	if(mybracketleft==0)  
+ 	{treeerror=true; controlerrorprint2("[BRANCHES]", name,"", "Branch class guide tree must contain as least one set of parentheses.",""); {if(breakonerror) return -1;}  }
+@@ -2904,10 +2904,10 @@ int dealwithtrees(vector<string> &block)
+ 			
+ 						if(mybracketleft!=mybracketright) 	
+ 						{cout<<rawvalue<<endl<<mybracketleft<<"  "<<mybracketright<<endl;
+-						treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Number of parantheses in guide tree do not match.",""); {if(breakonerror) return -1;}  }
++						treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Number of parentheses in guide tree do not match.",""); {if(breakonerror) return -1;}  }
+ 
+ 						if(mybracketleft==0)  
+-						{treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Guide tree must contain as least one set of parentheses.",""); {if(breakonerror) return -1;}  }
++						{treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "Guide tree mu st contain as least one set of parentheses.",""); {if(breakonerror) return -1;}  }
+ 													
+ 						c1='Q'; c2='Q'; 
+ 						int taxacount=0, coloncount=0, intbranch=0, extbranch=0;
+@@ -2945,7 +2945,7 @@ int dealwithtrees(vector<string> &block)
+ 							
+ 							if(c2==')' && c1!=';' && lengthon==0) 
+ 							{ 
+-								if(c1!=':') {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "There is no branch length after a right paranthesis in the tree.\nIt happened here \""+lasterror+"\"",""); {if(breakonerror) return -1;}  }
++								if(c1!=':') {treeerror=true; controlerrorprint2("[TREE]", name, commands.at(lasttest), "There is no branch length after a right parenthesis in the tree.\nIt happened here \""+lasterror+"\"",""); {if(breakonerror) return -1;}  }
+ 								else {lengthon=1; currentlength="";}
+ 							}
+ 							
+--- a/indelible.1
++++ b/indelible.1
+@@ -7,7 +7,7 @@ indelible \- powerful and flexible simul
+ No options can be passed via the commandline.
+ .SH DESCRIPTION
+ .TP
+-\fBindelible\fR can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continous time. All common evolutionary models are supported.
++\fBindelible\fR can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time. All common evolutionary models are supported.
+ .TP
+ The full documentation for \fBindelible\fR is available under \fI/usr/share/doc/indelible/help/index.html\fR.
+ .SH CONFIGURATION
diff --git a/debian/patches/series b/debian/patches/series
index a60b50c..242ae70 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@
 0003-added-manpage.patch
 0004-added-auto-tools-build-system.patch
 0005-remove-unnecessary-whitespace-from-the-end-of-sequen.patch
+0006-spelling.patch

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