[med-svn] [fast5] branch master updated (bf13df6 -> ad49186)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository fast5.

      from  bf13df6   releasing package fast5 version 0.6.2-7
       new  6198cc7   New upstream version 0.6.3
       new  52f1843   Merge tag 'upstream/0.6.3'
       new  0fdfd61   Vastly simplified packaging after upstream patches accepted
       new  79b8798   Don't hard-code hdf5-serial
       new  b7ed7f7   Fix installation of examples
       new  fbc276d   Fix source build in autopkgtest
       new  ad49186   Update changelog

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |    2 +
 .travis.yml                                        |    2 +-
 Doxyfile                                           | 2479 ++++++++++++++++++++
 README.org                                         |    2 +-
 debian/changelog                                   |    9 +
 debian/libfast5-dev.examples                       |    3 +-
 debian/libfast5-dev.install                        |    8 +-
 debian/patches/functional.patch                    |   14 -
 debian/patches/hdf5include.patch                   |   15 -
 debian/patches/rpath.patch                         |    8 +-
 debian/patches/series                              |    3 +-
 debian/patches/vpath.patch                         |   21 +
 debian/rules                                       |   26 +-
 debian/tests/control                               |    4 +-
 {src => include}/fast5.hpp                         |   24 +-
 {src => include/fast5}/Bit_Packer.hpp              |    0
 {src => include/fast5}/Huffman_Packer.hpp          |    0
 {src => include/fast5}/cwmap.fast5_ed_len_1.inl    |    0
 {src => include/fast5}/cwmap.fast5_ed_skip_1.inl   |    0
 {src => include/fast5}/cwmap.fast5_ev_move_1.inl   |    0
 .../fast5}/cwmap.fast5_ev_rel_skip_1.inl           |    0
 {src => include/fast5}/cwmap.fast5_fq_bp_1.inl     |    0
 {src => include/fast5}/cwmap.fast5_fq_qv_1.inl     |    0
 {src => include/fast5}/cwmap.fast5_rw_1.inl        |    0
 {src => include/fast5}/fast5_version.hpp           |    0
 {src => include/fast5}/hdf5_tools.hpp              | 1449 ++++++++----
 {src => include/fast5}/logger.hpp                  |    1 +
 python/bin/f5ls                                    |    4 +-
 python/setup.py                                    |    5 +-
 src/File_Packer.hpp                                |    3 +-
 src/Makefile                                       |    5 +-
 src/f5-mod.cpp                                     |    2 +-
 src/f5dump.cpp                                     |    2 +-
 src/f5ls-full.cpp                                  |    2 +-
 src/f5ls.cpp                                       |    2 +-
 src/f5pack.cpp                                     |    3 +-
 src/hdf5-mod.cpp                                   |    2 +-
 src/huffman-decode.cpp                             |    4 +-
 src/huffman-encode.cpp                             |    4 +-
 39 files changed, 3539 insertions(+), 569 deletions(-)
 create mode 100644 Doxyfile
 delete mode 100644 debian/patches/functional.patch
 delete mode 100644 debian/patches/hdf5include.patch
 create mode 100644 debian/patches/vpath.patch
 rename {src => include}/fast5.hpp (99%)
 rename {src => include/fast5}/Bit_Packer.hpp (100%)
 rename {src => include/fast5}/Huffman_Packer.hpp (100%)
 rename {src => include/fast5}/cwmap.fast5_ed_len_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_ed_skip_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_ev_move_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_ev_rel_skip_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_fq_bp_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_fq_qv_1.inl (100%)
 rename {src => include/fast5}/cwmap.fast5_rw_1.inl (100%)
 rename {src => include/fast5}/fast5_version.hpp (100%)
 rename {src => include/fast5}/hdf5_tools.hpp (55%)
 rename {src => include/fast5}/logger.hpp (99%)

-- 
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