[med-svn] [r-cran-luminescence] branch master updated (937d649 -> c6ba278)
Andreas Tille
tille at debian.org
Tue Oct 10 17:08:13 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-luminescence.
from 937d649 Moved packaging from SVN to Git
new 333bf7d Standards-Version: 4.1.1
new e1897e7 debhelper 10
new 3a773c0 New upstream version
new 57c7309 New upstream version 0.7.5
new 0cfa507 Updated version 0.7.5 from 'upstream/0.7.5'
new 8f64c48 Build-Depends: r-cran-magrittr
new c6ba278 Testsuite: autopkgtest-pkg-r
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 101 ++--
MD5 | 437 ++++++++------
NAMESPACE | 36 +-
NEWS | 489 +++++++++++++++-
R/CW2pHMi.R | 126 ++--
R/CW2pLM.R | 7 +-
R/CW2pLMi.R | 113 ++--
R/CW2pPMi.R | 106 ++--
R/Luminescence-package.R | 167 +++++-
R/PSL2Risoe.BINfileData.R | 186 ++++++
R/RLum.Analysis-class.R | 167 +++++-
R/RLum.Data.Curve-class.R | 104 +++-
R/RcppExports.R | 8 +-
R/Risoe.BINfileData2RLum.Analysis.R | 26 +-
R/Risoe.BINfileData2RLum.Data.Curve.R | 84 +--
R/RisoeBINfileData-class.R | 235 +++++---
R/analyse_FadingMeasurement.R | 821 +++++++++++++++++++++++++++
R/analyse_IRSAR.RF.R | 510 +++++++++++++----
R/analyse_SAR.CWOSL.R | 63 +-
R/analyse_SAR.TL.R | 342 ++++++-----
R/analyse_baSAR.R | 49 +-
R/analyse_portableOSL.R | 261 +++++++++
R/app_RLum.R | 6 +-
R/calc_AliquotSize.R | 137 +++--
R/calc_AverageDose.R | 517 +++++++++++++++++
R/calc_CentralDose.R | 16 +-
R/calc_CommonDose.R | 20 +-
R/calc_CosmicDoseRate.R | 83 +--
R/calc_FadingCorr.R | 17 +-
R/calc_FastRatio.R | 37 +-
R/calc_FiniteMixture.R | 2 +-
R/calc_Kars2008.R | 725 +++++++++++++++++++++++
R/calc_MaxDose.R | 96 +++-
R/calc_MinDose.R | 165 ++++--
R/calc_OSLLxTxRatio.R | 64 ++-
R/calc_Statistics.R | 26 +-
R/calc_TLLxTxRatio.R | 60 +-
R/calc_gSGC.R | 2 +-
R/convert_BIN2CSV.R | 115 ++++
R/convert_Daybreak2CSV.R | 91 +++
R/convert_PSL2CSV.R | 94 +++
R/convert_XSYG2CSV.R | 97 ++++
R/extract_IrradiationTimes.R | 57 +-
R/fit_CWCurve.R | 30 +-
R/fit_LMCurve.R | 17 +-
R/get_Layout.R | 14 +-
R/get_Quote.R | 4 +-
R/get_RLum.R | 75 ++-
R/github.R | 217 +++++++
R/install_DevelopmentVersion.R | 114 ++++
R/internals_RLum.R | 173 ++++++
R/merge_RLum.Data.Curve.R | 23 +-
R/merge_Risoe.BINfileData.R | 13 +-
R/methods_RLum.R | 34 +-
R/model_LuminescenceSignals.R | 18 +-
R/plot_AbanicoPlot.R | 9 +-
R/plot_DRTResults.R | 12 +-
R/plot_DetPlot.R | 6 +-
R/plot_FilterCombinations.R | 197 +++++--
R/plot_GrowthCurve.R | 688 ++++++++++++++++------
R/plot_KDE.R | 84 +--
R/plot_RLum.Analysis.R | 148 +++--
R/plot_RLum.Data.Curve.R | 72 +--
R/plot_RLum.Data.Spectrum.R | 87 ++-
R/plot_RLum.R | 14 +-
R/plot_RLum.Results.R | 6 +-
R/plot_RadialPlot.R | 176 +++---
R/plot_ViolinPlot.R | 7 +-
R/read_BIN2R.R | 150 +++--
R/read_Daybreak2R.R | 469 +++++++++++----
R/read_PSL2R.R | 313 ++++++++++
R/read_SPE2R.R | 3 +-
R/read_XSYG2R.R | 19 +-
R/set_RLum.R | 9 +-
R/set_Risoe.BINfileData.R | 11 +-
R/smooth_RLum.R | 73 +++
R/template_DRAC.R | 22 +-
R/use_DRAC.R | 151 +++--
R/verify_SingleGrainData.R | 16 +-
R/write_R2BIN.R | 28 +-
R/write_RLum2CSV.R | 240 ++++++++
R/zzz.R | 2 +-
data/ExampleData.BINfileData.RData | Bin 344081 -> 688543 bytes
data/ExampleData.Fading.RData | Bin 0 -> 2778 bytes
data/ExampleData.portableOSL.RData | Bin 0 -> 32632 bytes
data/datalist | 22 +-
debian/changelog | 7 +-
debian/compat | 2 +-
debian/control | 6 +-
inst/CITATION | 9 +-
inst/NEWS.Rd | 639 ++++++++++++++++++++-
man/Analyse_SAR.OSLdata.Rd | 17 +-
man/BaseDataSet.CosmicDoseRate.Rd | 2 +-
man/CW2pHMi.Rd | 19 +-
man/CW2pLM.Rd | 17 +-
man/CW2pLMi.Rd | 19 +-
man/CW2pPMi.Rd | 19 +-
man/ExampleData.BINfileData.Rd | 2 +-
man/ExampleData.CW_OSL_Curve.Rd | 1 -
man/ExampleData.DeValues.Rd | 1 -
man/ExampleData.Fading.Rd | 93 +++
man/ExampleData.FittingLM.Rd | 1 -
man/ExampleData.LxTxData.Rd | 1 -
man/ExampleData.LxTxOSLData.Rd | 1 -
man/ExampleData.RLum.Analysis.Rd | 2 +-
man/ExampleData.RLum.Data.Image.Rd | 2 +-
man/ExampleData.XSYG.Rd | 2 +-
man/ExampleData.portableOSL.Rd | 25 +
man/GitHub-API.Rd | 100 ++++
man/Luminescence-package.Rd | 76 +--
man/PSL2Risoe.BINfileData.Rd | 65 +++
man/RLum-class.Rd | 15 +-
man/RLum.Analysis-class.Rd | 44 +-
man/RLum.Data-class.Rd | 8 +-
man/RLum.Data.Curve-class.Rd | 46 +-
man/RLum.Data.Image-class.Rd | 19 +-
man/RLum.Data.Spectrum-class.Rd | 19 +-
man/RLum.Results-class.Rd | 19 +-
man/Risoe.BINfileData-class.Rd | 65 ++-
man/Risoe.BINfileData2RLum.Analysis.Rd | 21 +-
man/Second2Gray.Rd | 21 +-
man/analyse_FadingMeasurement.Rd | 149 +++++
man/analyse_IRSAR.RF.Rd | 159 ++++--
man/analyse_SAR.CWOSL.Rd | 22 +-
man/analyse_SAR.TL.Rd | 27 +-
man/analyse_baSAR.Rd | 28 +-
man/analyse_pIRIRSequence.Rd | 17 +-
man/analyse_portableOSL.Rd | 78 +++
man/app_RLum.Rd | 11 +-
man/apply_CosmicRayRemoval.Rd | 17 +-
man/apply_EfficiencyCorrection.Rd | 17 +-
man/as.Rd | 9 +-
man/bin_RLum.Data.Rd | 15 +-
man/calc_AliquotSize.Rd | 34 +-
man/calc_AverageDose.Rd | 143 +++++
man/calc_CentralDose.Rd | 29 +-
man/calc_CommonDose.Rd | 25 +-
man/calc_CosmicDoseRate.Rd | 19 +-
man/calc_FadingCorr.Rd | 23 +-
man/calc_FastRatio.Rd | 30 +-
man/calc_FiniteMixture.Rd | 17 +-
man/calc_FuchsLang2001.Rd | 17 +-
man/calc_HomogeneityTest.Rd | 15 +-
man/calc_IEU.Rd | 19 +-
man/calc_Kars2008.Rd | 180 ++++++
man/calc_MaxDose.Rd | 98 ++--
man/calc_MinDose.Rd | 148 +++--
man/calc_OSLLxTxRatio.Rd | 31 +-
man/calc_SourceDoseRate.Rd | 17 +-
man/calc_Statistics.Rd | 21 +-
man/calc_TLLxTxRatio.Rd | 34 +-
man/calc_ThermalLifetime.Rd | 15 +-
man/calc_gSGC.Rd | 15 +-
man/convert_BIN2CSV.Rd | 56 ++
man/convert_Daybreak2CSV.Rd | 52 ++
man/convert_PSL2CSV.Rd | 53 ++
man/convert_XSYG2CSV.Rd | 56 ++
man/extract_IrradiationTimes.Rd | 47 +-
man/fit_CWCurve.Rd | 21 +-
man/fit_LMCurve.Rd | 23 +-
man/get_Layout.Rd | 9 +-
man/get_Quote.Rd | 9 +-
man/get_RLum.Rd | 22 +-
man/get_Risoe.BINfileData.Rd | 15 +-
man/get_rightAnswer.Rd | 9 +-
man/install_DevelopmentVersion.Rd | 44 ++
man/length_RLum.Rd | 17 +-
man/merge_RLum.Analysis.Rd | 17 +-
man/merge_RLum.Data.Curve.Rd | 23 +-
man/merge_RLum.Rd | 17 +-
man/merge_RLum.Results.Rd | 9 +-
man/merge_Risoe.BINfileData.Rd | 23 +-
man/methods_RLum.Rd | 114 ++--
man/model_LuminescenceSignals.Rd | 50 +-
man/names_RLum.Rd | 17 +-
man/plot_AbanicoPlot.Rd | 23 +-
man/plot_DRTResults.Rd | 17 +-
man/plot_DetPlot.Rd | 15 +-
man/plot_FilterCombinations.Rd | 49 +-
man/plot_GrowthCurve.Rd | 42 +-
man/plot_Histogram.Rd | 13 +-
man/plot_KDE.Rd | 19 +-
man/plot_NRt.Rd | 12 +-
man/plot_RLum.Analysis.Rd | 32 +-
man/plot_RLum.Data.Curve.Rd | 17 +-
man/plot_RLum.Data.Image.Rd | 17 +-
man/plot_RLum.Data.Spectrum.Rd | 40 +-
man/plot_RLum.Rd | 17 +-
man/plot_RLum.Results.Rd | 17 +-
man/plot_RadialPlot.Rd | 31 +-
man/plot_Risoe.BINfileData.Rd | 17 +-
man/plot_ViolinPlot.Rd | 15 +-
man/read_BIN2R.Rd | 31 +-
man/read_Daybreak2R.Rd | 42 +-
man/read_PSL2R.Rd | 80 +++
man/read_SPE2R.Rd | 20 +-
man/read_XSYG2R.Rd | 17 +-
man/replicate_RLum.Rd | 15 +-
man/report_RLum.Rd | 13 +-
man/sTeve.Rd | 12 +-
man/set_RLum.Rd | 17 +-
man/set_Risoe.BINfileData.Rd | 18 +-
man/smooth_RLum.Rd | 74 +++
man/structure_RLum.Rd | 17 +-
man/template_DRAC.Rd | 14 +-
man/tune_Data.Rd | 15 +-
man/use_DRAC.Rd | 21 +-
man/verify_SingleGrainData.Rd | 31 +-
man/write_R2BIN.Rd | 19 +-
man/write_RLum2CSV.Rd | 81 +++
src/Luminescence_init.c | 26 +
src/RcppExports.cpp | 28 +-
src/analyse_IRSARRF_SRS.cpp | 143 ++++-
src/create_RLumDataCurve_matrix.cpp | 115 ++++
tests/testthat.R | 4 +
tests/testthat/test_Analyse_SAROSLdata.R | 17 +
tests/testthat/test_CW2pX.R | 71 +++
tests/testthat/test_PSL2RisoeBINfiledata.R | 14 +
tests/testthat/test_RisoeBINfileData-class.R | 16 +
tests/testthat/test_Second2Gray.R | 21 +
tests/testthat/test_analyse_IRSARRF.R | 54 ++
tests/testthat/test_analyse_SARCWOSL.R | 58 ++
tests/testthat/test_analyse_SARTL.R | 24 +
tests/testthat/test_analyse_baSAR.R | 51 ++
tests/testthat/test_analyse_pIRIRSequence.R | 52 ++
tests/testthat/test_analyse_portableOSL.R | 27 +
tests/testthat/test_bin_RLumData.R | 27 +
tests/testthat/test_calc_AliquotSize.R | 42 ++
tests/testthat/test_calc_AverageDose.R | 24 +
tests/testthat/test_calc_CentralDose.R | 27 +
tests/testthat/test_calc_CommonDose.R | 26 +
tests/testthat/test_calc_CosmicDoseRate.R | 57 ++
tests/testthat/test_calc_FadingCorr.R | 47 ++
tests/testthat/test_calc_FastRatio.R | 42 ++
tests/testthat/test_calc_FiniteMixture.R | 31 +
tests/testthat/test_calc_FuchsLang2001.R | 28 +
tests/testthat/test_calc_HomogeneityTest.R | 25 +
tests/testthat/test_calc_IEU.R | 25 +
tests/testthat/test_calc_Kars2008.R | 57 ++
tests/testthat/test_calc_MaxDose.R | 34 ++
tests/testthat/test_calc_MinDose.R | 33 ++
tests/testthat/test_calc_OSLLxTxRatio.R | 34 ++
tests/testthat/test_calc_SourceDoseRate.R | 23 +
tests/testthat/test_calc_Statistics.R | 87 +++
tests/testthat/test_calc_TLLxTxRatio.R | 47 ++
tests/testthat/test_calc_ThermalLifetime.R | 81 +++
tests/testthat/test_calc_gSGC.R | 28 +
tests/testthat/test_convert_X2CSV.R | 25 +
tests/testthat/test_fit_CWCurve.R | 24 +
tests/testthat/test_fit_LMCurve.R | 55 ++
tests/testthat/test_get_RLum.R | 26 +
tests/testthat/test_merge_RLumDataCurve.R | 22 +
tests/testthat/test_merge_RisoeBINfileData.R | 19 +
tests/testthat/test_names_RLum.R | 10 +
tests/testthat/test_plot_AbanicoPlot.R | 166 ++++++
tests/testthat/test_plot_Functions.R | 136 +++++
tests/testthat/test_plot_GrowthCurve.R | 84 +++
tests/testthat/test_read_BIN2R.R | 47 ++
tests/testthat/test_replicate_RLum.R | 12 +
tests/testthat/test_smooth_RLum.R | 25 +
tests/testthat/test_template_DRAC.R | 13 +
tests/testthat/test_verify_SingleGrainData.R | 14 +
tests/testthat/test_write_R2BIN.R | 57 ++
tests/testthat/test_write_RLum2CSV.R | 15 +
tests/testthat/test_zzz.R | 16 +
265 files changed, 14588 insertions(+), 2872 deletions(-)
create mode 100644 R/PSL2Risoe.BINfileData.R
create mode 100644 R/analyse_FadingMeasurement.R
create mode 100644 R/analyse_portableOSL.R
create mode 100644 R/calc_AverageDose.R
create mode 100644 R/calc_Kars2008.R
create mode 100644 R/convert_BIN2CSV.R
create mode 100644 R/convert_Daybreak2CSV.R
create mode 100644 R/convert_PSL2CSV.R
create mode 100644 R/convert_XSYG2CSV.R
create mode 100644 R/github.R
create mode 100644 R/install_DevelopmentVersion.R
create mode 100644 R/read_PSL2R.R
create mode 100644 R/smooth_RLum.R
create mode 100644 R/write_RLum2CSV.R
create mode 100644 data/ExampleData.Fading.RData
create mode 100644 data/ExampleData.portableOSL.RData
create mode 100644 man/ExampleData.Fading.Rd
create mode 100644 man/ExampleData.portableOSL.Rd
create mode 100644 man/GitHub-API.Rd
create mode 100644 man/PSL2Risoe.BINfileData.Rd
create mode 100644 man/analyse_FadingMeasurement.Rd
create mode 100644 man/analyse_portableOSL.Rd
create mode 100644 man/calc_AverageDose.Rd
create mode 100644 man/calc_Kars2008.Rd
create mode 100644 man/convert_BIN2CSV.Rd
create mode 100644 man/convert_Daybreak2CSV.Rd
create mode 100644 man/convert_PSL2CSV.Rd
create mode 100644 man/convert_XSYG2CSV.Rd
create mode 100644 man/install_DevelopmentVersion.Rd
create mode 100644 man/read_PSL2R.Rd
create mode 100644 man/smooth_RLum.Rd
create mode 100644 man/write_RLum2CSV.Rd
create mode 100644 src/Luminescence_init.c
create mode 100644 src/create_RLumDataCurve_matrix.cpp
create mode 100644 tests/testthat.R
create mode 100644 tests/testthat/test_Analyse_SAROSLdata.R
create mode 100644 tests/testthat/test_CW2pX.R
create mode 100644 tests/testthat/test_PSL2RisoeBINfiledata.R
create mode 100644 tests/testthat/test_RisoeBINfileData-class.R
create mode 100644 tests/testthat/test_Second2Gray.R
create mode 100644 tests/testthat/test_analyse_IRSARRF.R
create mode 100644 tests/testthat/test_analyse_SARCWOSL.R
create mode 100644 tests/testthat/test_analyse_SARTL.R
create mode 100644 tests/testthat/test_analyse_baSAR.R
create mode 100644 tests/testthat/test_analyse_pIRIRSequence.R
create mode 100644 tests/testthat/test_analyse_portableOSL.R
create mode 100644 tests/testthat/test_bin_RLumData.R
create mode 100644 tests/testthat/test_calc_AliquotSize.R
create mode 100644 tests/testthat/test_calc_AverageDose.R
create mode 100644 tests/testthat/test_calc_CentralDose.R
create mode 100644 tests/testthat/test_calc_CommonDose.R
create mode 100644 tests/testthat/test_calc_CosmicDoseRate.R
create mode 100644 tests/testthat/test_calc_FadingCorr.R
create mode 100644 tests/testthat/test_calc_FastRatio.R
create mode 100755 tests/testthat/test_calc_FiniteMixture.R
create mode 100755 tests/testthat/test_calc_FuchsLang2001.R
create mode 100755 tests/testthat/test_calc_HomogeneityTest.R
create mode 100755 tests/testthat/test_calc_IEU.R
create mode 100644 tests/testthat/test_calc_Kars2008.R
create mode 100755 tests/testthat/test_calc_MaxDose.R
create mode 100755 tests/testthat/test_calc_MinDose.R
create mode 100755 tests/testthat/test_calc_OSLLxTxRatio.R
create mode 100755 tests/testthat/test_calc_SourceDoseRate.R
create mode 100644 tests/testthat/test_calc_Statistics.R
create mode 100644 tests/testthat/test_calc_TLLxTxRatio.R
create mode 100644 tests/testthat/test_calc_ThermalLifetime.R
create mode 100644 tests/testthat/test_calc_gSGC.R
create mode 100644 tests/testthat/test_convert_X2CSV.R
create mode 100644 tests/testthat/test_fit_CWCurve.R
create mode 100644 tests/testthat/test_fit_LMCurve.R
create mode 100644 tests/testthat/test_get_RLum.R
create mode 100644 tests/testthat/test_merge_RLumDataCurve.R
create mode 100644 tests/testthat/test_merge_RisoeBINfileData.R
create mode 100644 tests/testthat/test_names_RLum.R
create mode 100644 tests/testthat/test_plot_AbanicoPlot.R
create mode 100644 tests/testthat/test_plot_Functions.R
create mode 100644 tests/testthat/test_plot_GrowthCurve.R
create mode 100644 tests/testthat/test_read_BIN2R.R
create mode 100644 tests/testthat/test_replicate_RLum.R
create mode 100644 tests/testthat/test_smooth_RLum.R
create mode 100644 tests/testthat/test_template_DRAC.R
create mode 100644 tests/testthat/test_verify_SingleGrainData.R
create mode 100644 tests/testthat/test_write_R2BIN.R
create mode 100644 tests/testthat/test_write_RLum2CSV.R
create mode 100644 tests/testthat/test_zzz.R
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