[med-svn] [sistr] 02/02: Some packaging metadata - no working packaging yet

[Andreas Tille]

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tille pushed a commit to branch master
in repository sistr.

commit 6c17fffdf2f75b2c795ecbff759c4b2ebc46b5e4
Author: Andreas Tille <tille at debian.org>
Date:   Wed Oct 11 14:27:14 2017 +0200

    Some packaging metadata - no working packaging yet
---
 debian/changelog         |  5 +++++
 debian/compat            |  1 +
 debian/control           | 20 ++++++++++++++++++++
 debian/copyright         | 16 ++++++++++++++++
 debian/rules             | 22 ++++++++++++++++++++++
 debian/source/format     |  1 +
 debian/upstream/metadata | 19 +++++++++++++++++++
 debian/watch             |  3 +++
 8 files changed, 87 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..1057154
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+sistr (1.0.2-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 11 Oct 2017 14:26:06 +0200
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..f599e28
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+10
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..d6c9506
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,20 @@
+Source: sistr
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10)
+Standards-Version: 4.1.1
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/sistr.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/sistr.git
+Homepage: https://github.com/peterk87/sistr_cmd/
+
+Package: sistr
+Architecture: any
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
+Description: Salmonella In Silico Typing Resource (SISTR)
+ The Salmonella In Silico Typing Resource (SISTR) commandline tool allows
+ serovar predictions from whole-genome sequence assemblies by
+ determination of antigen gene and cgMLST gene alleles using BLAST. Mash
+ MinHash can also be used for serovar prediction.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..6cebc88
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,16 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: SISTR
+Source: https://github.com/peterk87/sistr_cmd/releases
+Comment: **** Before manually editing this file you should give ****
+           scan-copyrights
+         **** available in cme + lib-config-model-dpkg-perl     ****
+         **** package a try.  For existing copyright files try  ****
+           cme update dpkg-copyright
+
+Files: *
+Copyright: © 20xx-20yy <upstream>
+License: <license>
+
+Files: debian/*
+Copyright: © 2017 Andreas Tille <tille at debian.org>
+License: <license>
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..62983db
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,22 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+include /usr/share/dpkg/default.mk
+# this provides:
+# DEB_SOURCE: the source package name
+# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
+# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
+# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
+# DEB_VERSION_UPSTREAM: the package's upstream version
+# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
+
+# for hardening you might like to uncomment this:
+# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+
+%:
+	dh $@
+
+#get-orig-source:
+#	. debian/get-orig-source
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..dfe1be1
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,19 @@
+Reference:
+  Author: >
+          Catherine E. Yoshida and Peter Kruczkiewicz and
+          Chad R. Laing and Erika J. Lingohr and
+          Victor P. J. Gannon and John H. E. Nash and
+          Eduardo N. Taboada
+  Title: >
+          The Salmonella In Silico Typing Resource (SISTR): An Open
+          Web-Accessible Tool for Rapidly Typing and Subtyping Draft
+          Salmonella Genome Assemblies
+  Journal: PLoS One
+  Year: 2016
+  Volume: 11
+  Number: 1
+  Pages: e0147101
+  DOI: 10.1371/journal.pone.0147101
+  PMID: 26800248
+  URL: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0147101
+  eprint: http://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0147101&type=printable
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..fac71fd
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=4
+
+https://github.com/peterk87/sistr_cmd/releases .*/archive/v at ANY_VERSION@@ARCHIVE_EXT@

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