[med-svn] [python-cobra] branch master updated (bc0100e -> a53cfc5)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch master
in repository python-cobra.

      from  bc0100e   Merge tag 'upstream/0.8.2'
       new  5444318   New upstream version 0.9.0
       new  8dee53d   Merge tag 'upstream/0.9.0'
       new  a53cfc5   Update changelog

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                  |   2 +-
 appveyor.yml                                 |   2 +-
 cobra/__init__.py                            |   2 +-
 cobra/core/gene.py                           |   4 +-
 cobra/core/metabolite.py                     |   7 +-
 cobra/core/model.py                          |  65 ++++--
 cobra/core/reaction.py                       |  43 ++--
 cobra/core/solution.py                       |  11 +-
 cobra/flux_analysis/phenotype_phase_plane.py | 305 +++++++++++++++------------
 cobra/flux_analysis/summary.py               |  10 +-
 cobra/manipulation/validate.py               |   4 -
 cobra/test/data/iJO1366.pickle               | Bin 1810497 -> 1810487 bytes
 cobra/test/data/mini.pickle                  | Bin 32825 -> 33312 bytes
 cobra/test/data/raven.pickle                 | Bin 13758 -> 13310 bytes
 cobra/test/data/salmonella.pickle            | Bin 2151196 -> 2151186 bytes
 cobra/test/data/textbook_solution.pickle     | Bin 143584 -> 7330 bytes
 cobra/test/test_flux_analysis.py             |  22 +-
 cobra/test/test_manipulation.py              |   3 +-
 cobra/test/test_model.py                     |  27 +++
 cobra/util/util.py                           |   7 +
 debian/changelog                             |   6 +
 release-notes/0.8.2.md                       |  13 +-
 release-notes/0.9.0.md                       |  30 +++
 release-notes/next-release.md                |   2 +
 scripts/compare-benchmark.py                 |  16 +-
 setup.cfg                                    |   2 +-
 setup.py                                     |   2 +-
 27 files changed, 371 insertions(+), 214 deletions(-)
 create mode 100644 release-notes/0.9.0.md

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cobra.git