[med-svn] [sumaclust] 05/06: Updated version 1.0.20 from 'upstream/1.0.20'

[Andreas Tille]

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tille pushed a commit to branch master
in repository sumaclust.

commit 11868fe8b2a9e401cb0cad2b28f91cbc0094fcdf
Merge: 71cab89 e6bd80f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Oct 18 19:45:26 2017 +0200

    Updated version 1.0.20 from 'upstream/1.0.20'
    
    with Debian dir debcfaec2ca9c88dfadba8d29d0fb9b23ae40fdf

 ._global.mk                                |  Bin 0 -> 171 bytes
 Licence_CeCILL_V2-en.txt                   |  506 +++++++
 Licence_CeCILL_V2-fr.txt                   |  512 ++++++++
 Makefile                                   |   52 +
 global.mk                                  |   45 +
 mtcompare_sumaclust.c                      |  334 +++++
 mtcompare_sumaclust.h                      |   15 +
 sumaclust.c                                | 1083 +++++++++++++++
 sumaclust.h                                |   34 +
 sumaclust_user_manual.pdf                  |  Bin 0 -> 79732 bytes
 sumalibs/._global.mk                       |  Bin 0 -> 171 bytes
 sumalibs/Licence_CeCILL_V2-en.txt          |  506 +++++++
 sumalibs/Licence_CeCILL_V2-fr.txt          |  512 ++++++++
 sumalibs/global.mk                         |   10 +
 sumalibs/libfasta/._Makefile               |  Bin 0 -> 171 bytes
 sumalibs/libfasta/Makefile                 |   33 +
 sumalibs/libfasta/fasta_header_handler.c   |  126 ++
 sumalibs/libfasta/fasta_header_handler.h   |   23 +
 sumalibs/libfasta/fasta_header_parser.c    | 1960 ++++++++++++++++++++++++++++
 sumalibs/libfasta/fasta_header_parser.h    |   13 +
 sumalibs/libfasta/fasta_header_parser.l    |  178 +++
 sumalibs/libfasta/fasta_seq_writer.c       |   76 ++
 sumalibs/libfasta/fasta_seq_writer.h       |   19 +
 sumalibs/libfasta/header_mem_handler.c     |   93 ++
 sumalibs/libfasta/header_mem_handler.h     |   22 +
 sumalibs/libfasta/sequence.c               |  454 +++++++
 sumalibs/libfasta/sequence.h               |   64 +
 sumalibs/libfile/._Makefile                |  Bin 0 -> 171 bytes
 sumalibs/libfile/Makefile                  |   25 +
 sumalibs/libfile/fileHandling.c            |   92 ++
 sumalibs/libfile/fileHandling.h            |   20 +
 sumalibs/liblcs/._Makefile                 |  Bin 0 -> 171 bytes
 sumalibs/liblcs/Makefile                   |   25 +
 sumalibs/liblcs/_lcs.ext.1.c               |  168 +++
 sumalibs/liblcs/_lcs.ext.2.c               |   34 +
 sumalibs/liblcs/_lcs.ext.3.c               |   34 +
 sumalibs/liblcs/_lcs.h                     |   29 +
 sumalibs/liblcs/_lcs_fast.h                |  597 +++++++++
 sumalibs/liblcs/banded_LCS_alignment.c     |  211 +++
 sumalibs/liblcs/banded_LCS_alignment.h     |    9 +
 sumalibs/liblcs/sse_banded_LCS_alignment.c |  724 ++++++++++
 sumalibs/liblcs/sse_banded_LCS_alignment.h |   24 +
 sumalibs/liblcs/upperband.c                |  382 ++++++
 sumalibs/liblcs/upperband.h                |   18 +
 sumalibs/libsse/_sse.h                     |  961 ++++++++++++++
 sumalibs/libutils/._Makefile               |  Bin 0 -> 171 bytes
 sumalibs/libutils/Makefile                 |   25 +
 sumalibs/libutils/debug.c                  |   32 +
 sumalibs/libutils/debug.h                  |   25 +
 sumalibs/libutils/utilities.c              |  230 ++++
 sumalibs/libutils/utilities.h              |   56 +
 51 files changed, 10391 insertions(+)

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