[med-svn] [sumaclust] branch upstream updated (e6bd80f -> a62dd4a)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository sumaclust.

      from  e6bd80f   New upstream version 1.0.20
       new  a62dd4a   New upstream version 1.0.31

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ._sumaclust.c                                | Bin 0 -> 171 bytes
 sumaclust.c                                  |   7 +++----
 sumalibs/._Licence_CeCILL_V2-en.txt          | Bin 0 -> 226 bytes
 sumalibs/._Licence_CeCILL_V2-fr.txt          | Bin 0 -> 226 bytes
 sumalibs/._global.mk                         | Bin 171 -> 226 bytes
 sumalibs/._libfasta                          | Bin 0 -> 226 bytes
 sumalibs/._libfile                           | Bin 0 -> 226 bytes
 sumalibs/._liblcs                            | Bin 0 -> 226 bytes
 sumalibs/._libsse                            | Bin 0 -> 226 bytes
 sumalibs/._libutils                          | Bin 0 -> 226 bytes
 sumalibs/Licence_CeCILL_V2-en.txt            |   0
 sumalibs/Licence_CeCILL_V2-fr.txt            |   0
 sumalibs/global.mk                           |   0
 sumalibs/libfasta/._Makefile                 | Bin 171 -> 226 bytes
 sumalibs/libfasta/._fasta_header_handler.c   | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_header_handler.h   | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_header_parser.c    | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_header_parser.h    | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_header_parser.l    | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_seq_writer.c       | Bin 0 -> 226 bytes
 sumalibs/libfasta/._fasta_seq_writer.h       | Bin 0 -> 226 bytes
 sumalibs/libfasta/._header_mem_handler.c     | Bin 0 -> 226 bytes
 sumalibs/libfasta/._header_mem_handler.h     | Bin 0 -> 226 bytes
 sumalibs/libfasta/._sequence.c               | Bin 0 -> 226 bytes
 sumalibs/libfasta/._sequence.h               | Bin 0 -> 226 bytes
 sumalibs/libfasta/Makefile                   |   0
 sumalibs/libfasta/fasta_header_handler.c     |   0
 sumalibs/libfasta/fasta_header_handler.h     |   0
 sumalibs/libfasta/fasta_header_parser.c      |   0
 sumalibs/libfasta/fasta_header_parser.h      |   0
 sumalibs/libfasta/fasta_header_parser.l      |   0
 sumalibs/libfasta/fasta_seq_writer.c         |   0
 sumalibs/libfasta/fasta_seq_writer.h         |   0
 sumalibs/libfasta/header_mem_handler.c       |   0
 sumalibs/libfasta/header_mem_handler.h       |   0
 sumalibs/libfasta/sequence.c                 |   0
 sumalibs/libfasta/sequence.h                 |   0
 sumalibs/libfile/._Makefile                  | Bin 171 -> 226 bytes
 sumalibs/libfile/._fileHandling.c            | Bin 0 -> 226 bytes
 sumalibs/libfile/._fileHandling.h            | Bin 0 -> 226 bytes
 sumalibs/libfile/Makefile                    |   0
 sumalibs/libfile/fileHandling.c              |   0
 sumalibs/libfile/fileHandling.h              |   0
 sumalibs/liblcs/._Makefile                   | Bin 171 -> 226 bytes
 sumalibs/liblcs/.__lcs.ext.1.c               | Bin 0 -> 226 bytes
 sumalibs/liblcs/.__lcs.ext.2.c               | Bin 0 -> 226 bytes
 sumalibs/liblcs/.__lcs.ext.3.c               | Bin 0 -> 226 bytes
 sumalibs/liblcs/.__lcs.h                     | Bin 0 -> 226 bytes
 sumalibs/liblcs/.__lcs_fast.h                | Bin 0 -> 226 bytes
 sumalibs/liblcs/._banded_LCS_alignment.c     | Bin 0 -> 226 bytes
 sumalibs/liblcs/._banded_LCS_alignment.h     | Bin 0 -> 226 bytes
 sumalibs/liblcs/._sse_banded_LCS_alignment.c | Bin 0 -> 226 bytes
 sumalibs/liblcs/._sse_banded_LCS_alignment.h | Bin 0 -> 226 bytes
 sumalibs/liblcs/._upperband.c                | Bin 0 -> 226 bytes
 sumalibs/liblcs/._upperband.h                | Bin 0 -> 226 bytes
 sumalibs/liblcs/Makefile                     |   0
 sumalibs/liblcs/_lcs.ext.1.c                 |   0
 sumalibs/liblcs/_lcs.ext.2.c                 |   0
 sumalibs/liblcs/_lcs.ext.3.c                 |   0
 sumalibs/liblcs/_lcs.h                       |   0
 sumalibs/liblcs/_lcs_fast.h                  |   0
 sumalibs/liblcs/banded_LCS_alignment.c       |   0
 sumalibs/liblcs/banded_LCS_alignment.h       |   0
 sumalibs/liblcs/sse_banded_LCS_alignment.c   |   3 +++
 sumalibs/liblcs/sse_banded_LCS_alignment.h   |   0
 sumalibs/liblcs/upperband.c                  |   0
 sumalibs/liblcs/upperband.h                  |   0
 sumalibs/libsse/.__sse.h                     | Bin 0 -> 226 bytes
 sumalibs/libsse/_sse.h                       |   0
 sumalibs/libutils/._Makefile                 | Bin 171 -> 226 bytes
 sumalibs/libutils/._debug.c                  | Bin 0 -> 226 bytes
 sumalibs/libutils/._debug.h                  | Bin 0 -> 226 bytes
 sumalibs/libutils/._utilities.c              | Bin 0 -> 226 bytes
 sumalibs/libutils/._utilities.h              | Bin 0 -> 226 bytes
 sumalibs/libutils/Makefile                   |   0
 sumalibs/libutils/debug.c                    |   0
 sumalibs/libutils/debug.h                    |   0
 sumalibs/libutils/utilities.c                |   0
 sumalibs/libutils/utilities.h                |   0
 79 files changed, 6 insertions(+), 4 deletions(-)
 create mode 100644 ._sumaclust.c
 create mode 100755 sumalibs/._Licence_CeCILL_V2-en.txt
 create mode 100755 sumalibs/._Licence_CeCILL_V2-fr.txt
 mode change 100644 => 100755 sumalibs/._global.mk
 create mode 100755 sumalibs/._libfasta
 create mode 100755 sumalibs/._libfile
 create mode 100755 sumalibs/._liblcs
 create mode 100755 sumalibs/._libsse
 create mode 100755 sumalibs/._libutils
 mode change 100644 => 100755 sumalibs/Licence_CeCILL_V2-en.txt
 mode change 100644 => 100755 sumalibs/Licence_CeCILL_V2-fr.txt
 mode change 100644 => 100755 sumalibs/global.mk
 mode change 100644 => 100755 sumalibs/libfasta/._Makefile
 create mode 100755 sumalibs/libfasta/._fasta_header_handler.c
 create mode 100755 sumalibs/libfasta/._fasta_header_handler.h
 create mode 100755 sumalibs/libfasta/._fasta_header_parser.c
 create mode 100755 sumalibs/libfasta/._fasta_header_parser.h
 create mode 100755 sumalibs/libfasta/._fasta_header_parser.l
 create mode 100755 sumalibs/libfasta/._fasta_seq_writer.c
 create mode 100755 sumalibs/libfasta/._fasta_seq_writer.h
 create mode 100755 sumalibs/libfasta/._header_mem_handler.c
 create mode 100755 sumalibs/libfasta/._header_mem_handler.h
 create mode 100755 sumalibs/libfasta/._sequence.c
 create mode 100755 sumalibs/libfasta/._sequence.h
 mode change 100644 => 100755 sumalibs/libfasta/Makefile
 mode change 100644 => 100755 sumalibs/libfasta/fasta_header_handler.c
 mode change 100644 => 100755 sumalibs/libfasta/fasta_header_handler.h
 mode change 100644 => 100755 sumalibs/libfasta/fasta_header_parser.c
 mode change 100644 => 100755 sumalibs/libfasta/fasta_header_parser.h
 mode change 100644 => 100755 sumalibs/libfasta/fasta_header_parser.l
 mode change 100644 => 100755 sumalibs/libfasta/fasta_seq_writer.c
 mode change 100644 => 100755 sumalibs/libfasta/fasta_seq_writer.h
 mode change 100644 => 100755 sumalibs/libfasta/header_mem_handler.c
 mode change 100644 => 100755 sumalibs/libfasta/header_mem_handler.h
 mode change 100644 => 100755 sumalibs/libfasta/sequence.c
 mode change 100644 => 100755 sumalibs/libfasta/sequence.h
 mode change 100644 => 100755 sumalibs/libfile/._Makefile
 create mode 100755 sumalibs/libfile/._fileHandling.c
 create mode 100755 sumalibs/libfile/._fileHandling.h
 mode change 100644 => 100755 sumalibs/libfile/Makefile
 mode change 100644 => 100755 sumalibs/libfile/fileHandling.c
 mode change 100644 => 100755 sumalibs/libfile/fileHandling.h
 mode change 100644 => 100755 sumalibs/liblcs/._Makefile
 create mode 100755 sumalibs/liblcs/.__lcs.ext.1.c
 create mode 100755 sumalibs/liblcs/.__lcs.ext.2.c
 create mode 100755 sumalibs/liblcs/.__lcs.ext.3.c
 create mode 100755 sumalibs/liblcs/.__lcs.h
 create mode 100755 sumalibs/liblcs/.__lcs_fast.h
 create mode 100755 sumalibs/liblcs/._banded_LCS_alignment.c
 create mode 100755 sumalibs/liblcs/._banded_LCS_alignment.h
 create mode 100755 sumalibs/liblcs/._sse_banded_LCS_alignment.c
 create mode 100755 sumalibs/liblcs/._sse_banded_LCS_alignment.h
 create mode 100755 sumalibs/liblcs/._upperband.c
 create mode 100755 sumalibs/liblcs/._upperband.h
 mode change 100644 => 100755 sumalibs/liblcs/Makefile
 mode change 100644 => 100755 sumalibs/liblcs/_lcs.ext.1.c
 mode change 100644 => 100755 sumalibs/liblcs/_lcs.ext.2.c
 mode change 100644 => 100755 sumalibs/liblcs/_lcs.ext.3.c
 mode change 100644 => 100755 sumalibs/liblcs/_lcs.h
 mode change 100644 => 100755 sumalibs/liblcs/_lcs_fast.h
 mode change 100644 => 100755 sumalibs/liblcs/banded_LCS_alignment.c
 mode change 100644 => 100755 sumalibs/liblcs/banded_LCS_alignment.h
 mode change 100644 => 100755 sumalibs/liblcs/sse_banded_LCS_alignment.c
 mode change 100644 => 100755 sumalibs/liblcs/sse_banded_LCS_alignment.h
 mode change 100644 => 100755 sumalibs/liblcs/upperband.c
 mode change 100644 => 100755 sumalibs/liblcs/upperband.h
 create mode 100755 sumalibs/libsse/.__sse.h
 mode change 100644 => 100755 sumalibs/libsse/_sse.h
 mode change 100644 => 100755 sumalibs/libutils/._Makefile
 create mode 100755 sumalibs/libutils/._debug.c
 create mode 100755 sumalibs/libutils/._debug.h
 create mode 100755 sumalibs/libutils/._utilities.c
 create mode 100755 sumalibs/libutils/._utilities.h
 mode change 100644 => 100755 sumalibs/libutils/Makefile
 mode change 100644 => 100755 sumalibs/libutils/debug.c
 mode change 100644 => 100755 sumalibs/libutils/debug.h
 mode change 100644 => 100755 sumalibs/libutils/utilities.c
 mode change 100644 => 100755 sumalibs/libutils/utilities.h

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sumaclust.git