[med-svn] [r-bioc-dnacopy] 02/08: New upstream version 1.50.1

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-dnacopy.

commit 97f3ad84c37445017f61134996d9e7518bc5e85c
Author: Andreas Tille <tille at debian.org>
Date:   Sun Oct 22 18:25:37 2017 +0200

    New upstream version 1.50.1
---
 DESCRIPTION          |   4 ++--
 R/changepoints.R     |   2 +-
 build/vignette.rds   | Bin 218 -> 216 bytes
 inst/CHANGES         |   8 ++++++++
 inst/doc/DNAcopy.pdf | Bin 218430 -> 218751 bytes
 5 files changed, 11 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 34a7af5..93c59b2 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: DNAcopy
 Title: DNA copy number data analysis
-Version: 1.48.0
+Version: 1.50.1
 Author: Venkatraman E. Seshan, Adam Olshen
 Description: Implements the circular binary segmentation (CBS) 
         algorithm to segment DNA copy number data and identify
@@ -10,4 +10,4 @@ LazyData: yes
 License: GPL (>= 2)
 biocViews: Microarray, CopyNumberVariation
 NeedsCompilation: yes
-Packaged: 2016-10-17 22:10:08 UTC; biocbuild
+Packaged: 2017-05-05 22:17:21 UTC; biocbuild
diff --git a/R/changepoints.R b/R/changepoints.R
index 3a567fd..373ceb7 100644
--- a/R/changepoints.R
+++ b/R/changepoints.R
@@ -188,7 +188,7 @@ trimmed.variance <- function(genomdat, trim=0.025)
 inflfact <- function(trim)
   {
     a <- qnorm(1-trim)
-    x <- seq(-a,a,length=10001)
+    x <- seq(-a,a,length.out=10001)
     x1 <- (x[-10001] + x[-1])/2
     1/(sum(x1^2*dnorm(x1)/(1-2*trim))*(2*a/10000))
   }
diff --git a/build/vignette.rds b/build/vignette.rds
index 539c469..12cb98c 100644
Binary files a/build/vignette.rds and b/build/vignette.rds differ
diff --git a/inst/CHANGES b/inst/CHANGES
index 48f341e..a6e861e 100644
--- a/inst/CHANGES
+++ b/inst/CHANGES
@@ -1,3 +1,11 @@
+Changes in Version 1.49.1
+
+   o Added length.out in seq call (partial name issue)
+
+
+1.47.2 became 1.48.0 in Bioconductor 3.4 & =1.49.0 now
+------------------------------------------------------
+
 Changes in Version 1.47.2
 
    o Added a check to see if genomdat is a one-dimensional array 
diff --git a/inst/doc/DNAcopy.pdf b/inst/doc/DNAcopy.pdf
index 972feee..27c52b5 100644
Binary files a/inst/doc/DNAcopy.pdf and b/inst/doc/DNAcopy.pdf differ

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