[med-svn] [seqtools] 07/09: Updated version 4.44.1+dfsg from 'upstream/4.44.1+dfsg'
Andreas Tille
tille at debian.org
Wed Oct 25 14:32:42 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository seqtools.
commit 85c6bffeb3d9443e21bed0b4df88cfa795962a17
Merge: d17d95b 75cf31d
Author: Andreas Tille <tille at debian.org>
Date: Wed Oct 25 14:49:39 2017 +0200
Updated version 4.44.1+dfsg from 'upstream/4.44.1+dfsg'
with Debian dir 062669573f61c415ac1a09262d95e1657a010d93
gbtools/src/blatSrc/Makefile.am | 277 --
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gbtools/src/blatSrc/lib/blastOut.c | 833 ----
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gbtools/src/blatSrc/lib/dnaMarkov.c | 242 --
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gbtools/src/blatSrc/lib/mime.c | 687 ---
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gbtools/src/blatSrc/lib/oldGff.c | 643 ---
gbtools/src/blatSrc/lib/oligoTm.c | 333 --
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gbtools/src/include/blatSrc/pthreadDoList.h | 67 -
gbtools/src/include/blatSrc/pthreadWrap.h | 45 -
gbtools/src/include/blatSrc/qa.h | 65 -
gbtools/src/include/blatSrc/quickHeap.h | 53 -
gbtools/src/include/blatSrc/quotedP.h | 21 -
gbtools/src/include/blatSrc/ra.h | 81 -
gbtools/src/include/blatSrc/raToStruct.h | 64 -
gbtools/src/include/blatSrc/rainbow.h | 22 -
gbtools/src/include/blatSrc/rangeTree.h | 105 -
gbtools/src/include/blatSrc/rbTree.h | 102 -
gbtools/src/include/blatSrc/regexHelper.h | 29 -
gbtools/src/include/blatSrc/repMask.h | 56 -
gbtools/src/include/blatSrc/rle.h | 16 -
gbtools/src/include/blatSrc/rnautil.h | 55 -
gbtools/src/include/blatSrc/rql.h | 130 -
gbtools/src/include/blatSrc/rudp.h | 175 -
gbtools/src/include/blatSrc/scoreWindow.h | 7 -
gbtools/src/include/blatSrc/seg.h | 109 -
gbtools/src/include/blatSrc/seqOut.h | 91 -
gbtools/src/include/blatSrc/seqStats.h | 11 -
gbtools/src/include/blatSrc/shaRes.h | 45 -
gbtools/src/include/blatSrc/sig.h | 101 -
gbtools/src/include/blatSrc/slog.h | 18 -
gbtools/src/include/blatSrc/snof.h | 60 -
gbtools/src/include/blatSrc/snofmake.h | 35 -
gbtools/src/include/blatSrc/spaceSaver.h | 65 -
gbtools/src/include/blatSrc/spacedColumn.h | 46 -
gbtools/src/include/blatSrc/spacedSeed.h | 19 -
gbtools/src/include/blatSrc/splatAli.h | 80 -
gbtools/src/include/blatSrc/splix.h | 80 -
gbtools/src/include/blatSrc/sqlList.h | 142 -
gbtools/src/include/blatSrc/sqlNum.h | 83 -
gbtools/src/include/blatSrc/subText.h | 41 -
gbtools/src/include/blatSrc/sufa.h | 60 -
gbtools/src/include/blatSrc/sufx.h | 64 -
gbtools/src/include/blatSrc/supStitch.h | 73 -
gbtools/src/include/blatSrc/synQueue.h | 38 -
gbtools/src/include/blatSrc/tabRow.h | 45 -
gbtools/src/include/blatSrc/textOut.h | 48 -
gbtools/src/include/blatSrc/tokenizer.h | 66 -
gbtools/src/include/blatSrc/trans3.h | 59 -
gbtools/src/include/blatSrc/trix.h | 48 -
gbtools/src/include/blatSrc/twoBit.h | 209 -
gbtools/src/include/blatSrc/udc.h | 165 -
gbtools/src/include/blatSrc/unfin.h | 31 -
gbtools/src/include/blatSrc/userApp.mk | 49 -
gbtools/src/include/blatSrc/vGfx.h | 193 -
gbtools/src/include/blatSrc/vcf.h | 297 --
gbtools/src/include/blatSrc/vcfBits.h | 158 -
gbtools/src/include/blatSrc/verbose.h | 53 -
gbtools/src/include/blatSrc/wormdna.h | 245 --
gbtools/src/include/blatSrc/xAli.h | 73 -
gbtools/src/include/blatSrc/xa.h | 63 -
gbtools/src/include/blatSrc/xap.h | 78 -
gbtools/src/include/blatSrc/xenalign.h | 41 -
gbtools/src/include/blatSrc/xmlEscape.h | 17 -
gbtools/src/include/blatSrc/xp.h | 78 -
gbtools/src/include/blatSrc/zlibFace.h | 26 -
gbtools/src/include/json/json-forwards.h | 319 --
gbtools/src/include/json/json.h | 2241 ----------
gbtools/src/jsoncpp/Makefile.am | 15 -
gbtools/src/jsoncpp/Makefile.in | 723 ----
gbtools/src/jsoncpp/jsoncpp.cpp | 5247 -----------------------
447 files changed, 120385 deletions(-)
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