[med-svn] [seqan2] branch experimental updated (9055175 -> 7e3cc84)

Michael Crusoe misterc-guest at moszumanska.debian.org
Thu Feb 1 06:52:03 UTC 2018


This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch experimental
in repository seqan2.

      from  9055175   Testing upstream's 2nd formal release candidate
      adds  d20dbd5   Drop amd64, mips, mipsel to -j3 to save memory
      adds  fcc9384   typo
      adds  d7aab13   New upstream version 2.4.0~rc2+dfsg
      adds  27a0a76   Update upstream source from tag 'upstream/2.4.0_rc2+dfsg'
      adds  7e3cc84   Testing upstream's 3rd formal release candidate for 2.4.0

No new revisions were added by this update.

Summary of changes:
 CHANGELOG.rst                                      |  2 +-
 debian/changelog                                   | 13 ++++
 debian/rules                                       | 15 ++--
 debian/source/lintian-overrides                    |  3 -
 demos/howto/custom_file_ending.fa.dat              |  4 +
 demos/howto/custom_file_endings.cpp                | 76 ++++++++++++++++++
 demos/howto/custom_file_endings.cpp.stdout         |  2 +
 include/seqan/align/dp_scout_simd.h                |  8 +-
 include/seqan/seq_io/fasta_fastq.h                 | 12 +--
 include/seqan/seq_io/read_embl.h                   |  6 +-
 include/seqan/seq_io/read_genbank.h                |  6 +-
 include/seqan/stream/formatted_file.h              | 24 ++++++
 manual/source/Infrastructure/Use/Install.rst       |  2 +-
 .../Tutorial/HowTo/Recipes/CustomFileEndings.rst   | 89 ++++++++++++++++++++++
 tests/index/test_index_bifm.cpp                    |  2 +
 tests/translation/test_translation.h               |  2 +
 util/cmake/SeqAnSimdUtility.cmake                  | 37 +++++++--
 17 files changed, 266 insertions(+), 37 deletions(-)
 create mode 100644 demos/howto/custom_file_ending.fa.dat
 create mode 100644 demos/howto/custom_file_endings.cpp
 create mode 100644 demos/howto/custom_file_endings.cpp.stdout
 create mode 100644 manual/source/Tutorial/HowTo/Recipes/CustomFileEndings.rst

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