[med-svn] [seqan2] 02/03: Update upstream source from tag 'upstream/2.4.0+dfsg'
Michael Crusoe
misterc-guest at moszumanska.debian.org
Mon Feb 5 16:05:57 UTC 2018
This is an automated email from the git hooks/post-receive script.
misterc-guest pushed a commit to branch master
in repository seqan2.
commit 996ce03d2299bb485016dfefb80bb634679c0fa4
Merge: 26d1235 1fe74e5
Author: Michael R. Crusoe <michael.crusoe at gmail.com>
Date: Mon Feb 5 07:08:05 2018 -0800
Update upstream source from tag 'upstream/2.4.0+dfsg'
Update to upstream version '2.4.0+dfsg'
with Debian dir e9d0976e959e0576693ddaae86a348c42a1d8dc3
LICENSE | 3 +--
apps/alf/CMakeLists.txt | 2 +-
apps/alf/LICENSE | 2 +-
apps/alf/alf.cpp | 2 +-
apps/bs_tools/CMakeLists.txt | 2 +-
apps/bs_tools/LICENSE | 2 +-
apps/bs_tools/bisar.cpp | 2 +-
apps/bs_tools/casbar.cpp | 2 +-
apps/bs_tools/four2three.cpp | 2 +-
apps/dfi/CMakeLists.txt | 2 +-
apps/fiona/CMakeLists.txt | 2 +-
apps/fiona/index_qgram_parallel.h | 2 +-
apps/fx_tools/CMakeLists.txt | 2 +-
apps/fx_tools/LICENSE | 4 ++--
apps/fx_tools/fx_bam_coverage.cpp | 2 +-
apps/fx_tools/fx_fastq_stats.cpp | 2 +-
apps/gustaf/CMakeLists.txt | 2 +-
apps/gustaf/LICENSE | 2 +-
apps/gustaf/create_stellarmatches_from_file.h | 2 +-
apps/gustaf/gustaf.cpp | 2 +-
apps/gustaf/gustaf_matepairs.h | 2 +-
apps/gustaf/join_mates.cpp | 2 +-
apps/gustaf/msplazer.h | 2 +-
apps/gustaf/msplazer_algorithms.h | 2 +-
apps/gustaf/msplazer_main.h | 2 +-
apps/gustaf/msplazer_out.h | 2 +-
apps/gustaf/msplazer_parse_options.h | 2 +-
apps/gustaf/stellar_routines.h | 2 +-
apps/insegt/CMakeLists.txt | 2 +-
apps/insegt/LICENSE | 2 +-
apps/mason2/CMakeLists.txt | 2 +-
apps/mason2/LICENSE | 2 +-
apps/mason2/external_split_merge.cpp | 2 +-
apps/mason2/external_split_merge.h | 4 ++--
apps/mason2/fragment_generation.h | 2 +-
apps/mason2/genomic_variants.cpp | 2 +-
apps/mason2/genomic_variants.h | 2 +-
apps/mason2/individual_genome.h | 2 +-
apps/mason2/mason_frag_sequencing.cpp | 2 +-
apps/mason2/mason_genome.cpp | 2 +-
apps/mason2/mason_materializer.cpp | 2 +-
apps/mason2/mason_methylation.cpp | 2 +-
apps/mason2/mason_options.cpp | 2 +-
apps/mason2/mason_options.h | 2 +-
apps/mason2/mason_simulator.cpp | 2 +-
apps/mason2/mason_splicing.cpp | 2 +-
apps/mason2/mason_tests.cpp | 2 +-
apps/mason2/mason_types.h | 2 +-
apps/mason2/mason_variator.cpp | 2 +-
apps/mason2/methylation_levels.cpp | 2 +-
apps/mason2/methylation_levels.h | 2 +-
apps/mason2/omp_wrapper.h | 2 +-
apps/mason2/sequencing.h | 2 +-
apps/mason2/simulate_454.cpp | 2 +-
apps/mason2/simulate_base.cpp | 2 +-
apps/mason2/simulate_genome.cpp | 2 +-
apps/mason2/simulate_genome.h | 2 +-
apps/mason2/simulate_illumina.cpp | 2 +-
apps/mason2/simulate_sanger.cpp | 2 +-
apps/mason2/variation_size_tsv.h | 2 +-
apps/mason2/vcf_materialization.cpp | 2 +-
apps/mason2/vcf_materialization.h | 2 +-
apps/micro_razers/CMakeLists.txt | 2 +-
apps/ngs_roi/CMakeLists.txt | 2 +-
apps/ngs_roi/LICENSE | 2 +-
apps/ngs_roi/bam2roi.cpp | 2 +-
apps/ngs_roi/bam2roi.h | 2 +-
apps/ngs_roi/png_canvas.h | 2 +-
apps/ngs_roi/project_interval.cpp | 2 +-
apps/ngs_roi/project_interval.h | 2 +-
apps/ngs_roi/project_spliced.cpp | 2 +-
apps/ngs_roi/project_spliced.h | 2 +-
apps/ngs_roi/record_ext.h | 2 +-
apps/ngs_roi/roi_builder.cpp | 2 +-
apps/ngs_roi/roi_builder.h | 2 +-
apps/ngs_roi/roi_feature_projection.cpp | 2 +-
apps/ngs_roi/roi_plot_thumbnails.cpp | 2 +-
apps/pair_align/CMakeLists.txt | 2 +-
apps/pair_align/lib/pair_align_global.cpp | 2 +-
apps/pair_align/lib/pair_align_lcs.cpp | 2 +-
apps/pair_align/lib/pair_align_lib.cpp | 2 +-
apps/pair_align/lib/pair_align_lib.h | 2 +-
apps/pair_align/lib/pair_align_local.cpp | 2 +-
apps/param_chooser/CMakeLists.txt | 2 +-
apps/param_chooser/test_param_chooser.cpp | 2 +-
apps/rabema/CMakeLists.txt | 2 +-
apps/rabema/sorting.h | 2 +-
apps/razers/CMakeLists.txt | 2 +-
apps/razers3/CMakeLists.txt | 2 +-
apps/razers3/profile_timeline.h | 2 +-
apps/rep_sep/CMakeLists.txt | 2 +-
apps/sak/CMakeLists.txt | 2 +-
apps/sak/sak.cpp | 2 +-
apps/sam2matrix/CMakeLists.txt | 2 +-
apps/sam2matrix/LICENSE | 2 +-
apps/sam2matrix/sam2matrix.cpp | 2 +-
apps/samcat/CMakeLists.txt | 2 +-
apps/samcat/samcat.cpp | 2 +-
apps/searchjoin/CMakeLists.txt | 2 +-
apps/searchjoin/LICENSE | 2 +-
apps/searchjoin/db.h | 2 +-
apps/searchjoin/finder.h | 2 +-
apps/searchjoin/join.cpp | 2 +-
apps/searchjoin/search.cpp | 2 +-
apps/searchjoin/verifier.h | 2 +-
apps/searchjoin/writer.h | 2 +-
apps/seqan_tcoffee/CMakeLists.txt | 2 +-
apps/seqcons2/CMakeLists.txt | 2 +-
apps/seqcons2/LICENSE | 2 +-
apps/seqcons2/seqcons.cpp | 2 +-
apps/seqcons2/seqcons_app.cpp | 2 +-
apps/seqcons2/seqcons_app.h | 2 +-
apps/seqcons2/seqcons_options.cpp | 2 +-
apps/seqcons2/seqcons_options.h | 2 +-
apps/sgip/CMakeLists.txt | 2 +-
apps/snp_store/CMakeLists.txt | 2 +-
apps/splazers/CMakeLists.txt | 2 +-
apps/stellar/CMakeLists.txt | 2 +-
apps/tree_recon/CMakeLists.txt | 2 +-
apps/yara/CMakeLists.txt | 2 +-
apps/yara/LICENSE | 4 ++--
apps/yara/README.rst | 2 +-
apps/yara/basic_alphabet.h | 2 +-
apps/yara/bits_bucket.h | 2 +-
apps/yara/bits_context.h | 2 +-
apps/yara/bits_hits.h | 2 +-
apps/yara/bits_matches.h | 2 +-
apps/yara/bits_reads.h | 2 +-
apps/yara/bits_seeds.h | 2 +-
apps/yara/file_pair.h | 2 +-
apps/yara/file_prefetched.h | 2 +-
apps/yara/find_extender.h | 2 +-
apps/yara/find_verifier.h | 2 +-
apps/yara/index_fm.h | 2 +-
apps/yara/indexer.cpp | 2 +-
apps/yara/mapper.cpp | 2 +-
apps/yara/mapper.h | 2 +-
apps/yara/mapper_aligner.h | 2 +-
apps/yara/mapper_classifier.h | 2 +-
apps/yara/mapper_collector.h | 2 +-
apps/yara/mapper_extender.h | 2 +-
apps/yara/mapper_filter.h | 2 +-
apps/yara/mapper_ranker.h | 2 +-
apps/yara/mapper_verifier.h | 2 +-
apps/yara/mapper_writer.h | 2 +-
apps/yara/misc_options.h | 2 +-
apps/yara/misc_tags.h | 2 +-
apps/yara/misc_timer.h | 2 +-
apps/yara/misc_types.h | 2 +-
apps/yara/store_seqs.h | 2 +-
demos/LICENSE | 2 +-
demos/dox/basic/enable_if.cpp | 2 +-
demos/dox/basic/metaprogramming_control.cpp | 2 +-
demos/dox/basic/metaprogramming_logic.cpp | 2 +-
demos/dox/basic/metaprogramming_math.cpp | 2 +-
demos/dox/basic/metaprogramming_switch.cpp | 2 +-
demos/dox/sequence/segment.cpp | 2 +-
demos/dox/sequence/string.cpp | 2 +-
demos/howto/using_zip_iterator.cpp | 2 +-
demos/tutorial/generic_programming/template_subclassing.cpp | 2 +-
demos/tutorial/genome_annotations/base.cpp | 2 +-
.../journaled_string_tree/journaled_string_tree_base.cpp | 2 +-
demos/tutorial/simple_rna_seq/genequant_assignment4.cpp | 2 +-
demos/unassigned_or_unused/bam_library_size.cpp | 2 +-
demos/unassigned_or_unused/bam_print_alignments.cpp | 2 +-
demos/unassigned_or_unused/bamutil.cpp | 2 +-
demos/unassigned_or_unused/benchmark_stream.cpp | 2 +-
demos/unassigned_or_unused/benchmark_stream_write.cpp | 2 +-
demos/unassigned_or_unused/parse_lm_stellar.cpp | 2 +-
demos/unassigned_or_unused/sample_seqs.cpp | 2 +-
demos/unassigned_or_unused/soft_to_hard_masking.cpp | 2 +-
include/seqan/LICENSE | 2 +-
include/seqan/align.h | 2 +-
include/seqan/align/align_base.h | 2 +-
include/seqan/align/align_cols.h | 2 +-
include/seqan/align/align_config.h | 2 +-
include/seqan/align/align_interface_wrapper.h | 2 +-
include/seqan/align/align_iterator_base.h | 2 +-
include/seqan/align/align_metafunctions.h | 2 +-
include/seqan/align/align_traceback.h | 2 +-
include/seqan/align/aligned_sequence_concept.h | 2 +-
include/seqan/align/alignment_algorithm_tags.h | 2 +-
include/seqan/align/alignment_operations.h | 2 +-
include/seqan/align/dp_algorithm_impl.h | 2 +-
include/seqan/align/dp_align_simd_helper.h | 2 +-
include/seqan/align/dp_band.h | 2 +-
include/seqan/align/dp_cell.h | 2 +-
include/seqan/align/dp_cell_affine.h | 2 +-
include/seqan/align/dp_cell_dynamic.h | 2 +-
include/seqan/align/dp_cell_linear.h | 2 +-
include/seqan/align/dp_context.h | 2 +-
include/seqan/align/dp_formula.h | 2 +-
include/seqan/align/dp_formula_affine.h | 2 +-
include/seqan/align/dp_formula_dynamic.h | 2 +-
include/seqan/align/dp_formula_linear.h | 2 +-
include/seqan/align/dp_matrix.h | 2 +-
include/seqan/align/dp_matrix_navigator.h | 2 +-
include/seqan/align/dp_matrix_navigator_score_matrix.h | 2 +-
include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h | 2 +-
include/seqan/align/dp_matrix_navigator_trace_matrix.h | 2 +-
include/seqan/align/dp_matrix_sparse.h | 2 +-
include/seqan/align/dp_meta_info.h | 2 +-
include/seqan/align/dp_profile.h | 2 +-
include/seqan/align/dp_scout.h | 2 +-
include/seqan/align/dp_scout_simd.h | 2 +-
include/seqan/align/dp_setup.h | 2 +-
include/seqan/align/dp_trace_segment.h | 2 +-
include/seqan/align/dp_traceback_adaptor.h | 2 +-
include/seqan/align/dp_traceback_impl.h | 2 +-
include/seqan/align/evaluate_alignment.h | 2 +-
include/seqan/align/fragment.h | 2 +-
include/seqan/align/gap_anchor.h | 2 +-
include/seqan/align/gapped_value_type.h | 2 +-
include/seqan/align/gaps_anchor.h | 2 +-
include/seqan/align/gaps_array.h | 2 +-
include/seqan/align/gaps_base.h | 2 +-
include/seqan/align/gaps_iterator_anchor.h | 2 +-
include/seqan/align/gaps_iterator_array.h | 2 +-
include/seqan/align/gaps_iterator_base.h | 2 +-
include/seqan/align/global_alignment_banded.h | 2 +-
include/seqan/align/global_alignment_hirschberg_impl.h | 2 +-
include/seqan/align/global_alignment_myers_hirschberg_impl.h | 2 +-
include/seqan/align/global_alignment_myers_impl.h | 2 +-
include/seqan/align/global_alignment_specialized.h | 2 +-
include/seqan/align/global_alignment_unbanded.h | 2 +-
include/seqan/align/local_alignment_banded.h | 2 +-
.../seqan/align/local_alignment_banded_waterman_eggert_impl.h | 2 +-
include/seqan/align/local_alignment_enumeration.h | 2 +-
include/seqan/align/local_alignment_enumeration_banded.h | 2 +-
include/seqan/align/local_alignment_enumeration_unbanded.h | 2 +-
include/seqan/align/local_alignment_unbanded.h | 2 +-
include/seqan/align/local_alignment_waterman_eggert_impl.h | 2 +-
include/seqan/align/matrix_base.h | 2 +-
include/seqan/align_extend.h | 2 +-
include/seqan/align_extend/align_extend.h | 2 +-
include/seqan/align_extend/align_extend_base.h | 2 +-
include/seqan/align_extend/dp_scout_xdrop.h | 2 +-
include/seqan/align_parallel.h | 2 +-
include/seqan/align_parallel/async_wave_execution_interface.h | 2 +-
include/seqan/align_parallel/dp_kernel_adaptor.h | 2 +-
include/seqan/align_parallel/dp_parallel_execution_policies.h | 2 +-
include/seqan/align_parallel/dp_parallel_scout.h | 2 +-
include/seqan/align_parallel/dp_parallel_scout_simd.h | 2 +-
include/seqan/align_parallel/dp_settings.h | 2 +-
include/seqan/align_parallel/dp_traits.h | 2 +-
include/seqan/align_parallel/parallel_align_interface.h | 2 +-
include/seqan/align_parallel/wavefront_alignment_executor.h | 2 +-
include/seqan/align_parallel/wavefront_alignment_result.h | 2 +-
include/seqan/align_parallel/wavefront_alignment_scheduler.h | 2 +-
include/seqan/align_parallel/wavefront_alignment_task.h | 2 +-
.../align_parallel/wavefront_alignment_thread_local_storage.h | 2 +-
include/seqan/align_parallel/wavefront_task.h | 2 +-
include/seqan/align_parallel/wavefront_task_event.h | 2 +-
include/seqan/align_parallel/wavefront_task_executor.h | 2 +-
include/seqan/align_parallel/wavefront_task_queue.h | 2 +-
include/seqan/align_parallel/wavefront_task_scheduler.h | 2 +-
include/seqan/align_parallel/wavefront_task_util.h | 2 +-
include/seqan/align_profile.h | 2 +-
include/seqan/align_profile/add_to_profile.h | 2 +-
include/seqan/align_profile/score_profile_seq.h | 2 +-
include/seqan/align_split.h | 2 +-
include/seqan/align_split/align_split_interface.h | 2 +-
include/seqan/align_split/dp_scout_split.h | 2 +-
include/seqan/alignment_free.h | 2 +-
include/seqan/alignment_free/af_d2.h | 2 +-
include/seqan/alignment_free/af_d2star.h | 2 +-
include/seqan/alignment_free/af_d2z.h | 2 +-
include/seqan/alignment_free/af_n2.h | 2 +-
include/seqan/alignment_free/alignment_free_base.h | 2 +-
include/seqan/alignment_free/alignment_free_comparison.h | 2 +-
include/seqan/alignment_free/kmer_functions.h | 2 +-
include/seqan/arg_parse.h | 2 +-
include/seqan/arg_parse/arg_parse_argument.h | 2 +-
include/seqan/arg_parse/arg_parse_ctd_support.h | 2 +-
include/seqan/arg_parse/arg_parse_doc.h | 4 ++--
include/seqan/arg_parse/arg_parse_exceptions.h | 2 +-
include/seqan/arg_parse/arg_parse_option.h | 2 +-
include/seqan/arg_parse/arg_parse_parse.h | 2 +-
include/seqan/arg_parse/arg_parse_type_support.h | 2 +-
include/seqan/arg_parse/arg_parse_version_check.h | 2 +-
include/seqan/arg_parse/argument_parser.h | 2 +-
include/seqan/arg_parse/tool_doc.h | 2 +-
include/seqan/arg_parse/xml_support.h | 2 +-
include/seqan/bam_io.h | 2 +-
include/seqan/bam_io/bam_alignment_record.h | 2 +-
include/seqan/bam_io/bam_alignment_record_util.h | 2 +-
include/seqan/bam_io/bam_file.h | 2 +-
include/seqan/bam_io/bam_header_record.h | 2 +-
include/seqan/bam_io/bam_index_bai.h | 4 ++--
include/seqan/bam_io/bam_io_context.h | 2 +-
include/seqan/bam_io/bam_sam_conversion.h | 2 +-
include/seqan/bam_io/bam_scanner_cache.h | 2 +-
include/seqan/bam_io/bam_tags_dict.h | 2 +-
include/seqan/bam_io/cigar.h | 2 +-
include/seqan/bam_io/read_bam.h | 2 +-
include/seqan/bam_io/read_sam.h | 2 +-
include/seqan/bam_io/write_bam.h | 2 +-
include/seqan/bam_io/write_sam.h | 2 +-
include/seqan/basic.h | 2 +-
include/seqan/basic/aggregate_concept.h | 2 +-
include/seqan/basic/allocator_chunkpool.h | 2 +-
include/seqan/basic/allocator_interface.h | 2 +-
include/seqan/basic/allocator_multipool.h | 2 +-
include/seqan/basic/allocator_simple.h | 2 +-
include/seqan/basic/allocator_singlepool.h | 2 +-
include/seqan/basic/allocator_to_std.h | 2 +-
include/seqan/basic/alphabet_adapt_builtins.h | 2 +-
include/seqan/basic/alphabet_bio.h | 2 +-
include/seqan/basic/alphabet_concept.h | 2 +-
include/seqan/basic/alphabet_math.h | 2 +-
include/seqan/basic/alphabet_profile.h | 2 +-
include/seqan/basic/alphabet_qualities.h | 2 +-
include/seqan/basic/alphabet_residue.h | 2 +-
include/seqan/basic/alphabet_residue_tabs.h | 2 +-
include/seqan/basic/alphabet_simple_type.h | 2 +-
include/seqan/basic/alphabet_storage.h | 2 +-
include/seqan/basic/array_construct_destruct.h | 2 +-
include/seqan/basic/basic_aggregate.h | 2 +-
include/seqan/basic/basic_allocator.h | 2 +-
include/seqan/basic/basic_alphabet.h | 2 +-
include/seqan/basic/basic_concept.h | 2 +-
include/seqan/basic/basic_container.h | 2 +-
include/seqan/basic/basic_debug.h | 2 +-
include/seqan/basic/basic_exception.h | 2 +-
include/seqan/basic/basic_functors.h | 2 +-
include/seqan/basic/basic_fundamental.h | 2 +-
include/seqan/basic/basic_iterator.h | 2 +-
include/seqan/basic/basic_math.h | 2 +-
include/seqan/basic/basic_metaprogramming.h | 2 +-
include/seqan/basic/basic_parallelism.h | 2 +-
include/seqan/basic/basic_proxy.h | 2 +-
include/seqan/basic/basic_smart_pointer.h | 2 +-
include/seqan/basic/basic_stream.h | 2 +-
include/seqan/basic/basic_tangle.h | 2 +-
include/seqan/basic/basic_type.h | 2 +-
include/seqan/basic/boost_preprocessor_subset.h | 6 +++---
include/seqan/basic/builtin_functions.h | 2 +-
include/seqan/basic/concept_checking.h | 2 +-
include/seqan/basic/container_concept.h | 2 +-
include/seqan/basic/debug_helper.h | 2 +-
include/seqan/basic/debug_test_system.h | 2 +-
include/seqan/basic/fundamental_chunking.h | 2 +-
include/seqan/basic/fundamental_comparison.h | 2 +-
include/seqan/basic/fundamental_concepts.h | 2 +-
include/seqan/basic/fundamental_conversion.h | 2 +-
include/seqan/basic/fundamental_metafunctions.h | 2 +-
include/seqan/basic/fundamental_tags.h | 2 +-
include/seqan/basic/fundamental_transport.h | 2 +-
include/seqan/basic/holder_base.h | 2 +-
include/seqan/basic/holder_simple.h | 2 +-
include/seqan/basic/holder_tristate.h | 2 +-
include/seqan/basic/hosted_type_interface.h | 2 +-
include/seqan/basic/iterator_adapt_pointer.h | 2 +-
include/seqan/basic/iterator_adapt_std.h | 2 +-
include/seqan/basic/iterator_adaptor.h | 2 +-
include/seqan/basic/iterator_base.h | 2 +-
include/seqan/basic/iterator_concept.h | 2 +-
include/seqan/basic/iterator_counting.h | 2 +-
include/seqan/basic/iterator_interface.h | 2 +-
include/seqan/basic/iterator_position.h | 2 +-
include/seqan/basic/iterator_zip.h | 2 +-
include/seqan/basic/macro_deprecated.h | 2 +-
include/seqan/basic/math_functions.h | 2 +-
include/seqan/basic/math_log_space_value.h | 2 +-
include/seqan/basic/metaprogramming_control.h | 2 +-
include/seqan/basic/metaprogramming_enable_if.h | 2 +-
include/seqan/basic/metaprogramming_logic.h | 2 +-
include/seqan/basic/metaprogramming_math.h | 2 +-
include/seqan/basic/metaprogramming_type.h | 2 +-
include/seqan/basic/metaprogramming_type_algebra.h | 2 +-
include/seqan/basic/pair_base.h | 2 +-
include/seqan/basic/pair_bit_compressed.h | 2 +-
include/seqan/basic/pair_packed.h | 2 +-
include/seqan/basic/profiling.h | 2 +-
include/seqan/basic/property_map_concept.h | 2 +-
include/seqan/basic/proxy_base.h | 2 +-
include/seqan/basic/proxy_iterator.h | 2 +-
include/seqan/basic/test_system.h | 2 +-
include/seqan/basic/triple_base.h | 2 +-
include/seqan/basic/triple_packed.h | 2 +-
include/seqan/basic/tuple_base.h | 2 +-
include/seqan/basic/tuple_bit_compressed.h | 2 +-
include/seqan/basic/volatile_ptr.h | 2 +-
include/seqan/bed_io.h | 2 +-
include/seqan/bed_io/bed_file.h | 2 +-
include/seqan/bed_io/bed_record.h | 2 +-
include/seqan/bed_io/read_bed.h | 2 +-
include/seqan/bed_io/write_bed.h | 2 +-
include/seqan/blast.h | 2 +-
include/seqan/blast/blast_base.h | 2 +-
include/seqan/blast/blast_io_context.h | 2 +-
include/seqan/blast/blast_record.h | 2 +-
include/seqan/blast/blast_report_out.h | 2 +-
include/seqan/blast/blast_statistics.h | 2 +-
include/seqan/blast/blast_tabular.h | 2 +-
include/seqan/blast/blast_tabular_in.h | 2 +-
include/seqan/blast/blast_tabular_lowlevel.h | 4 ++--
include/seqan/blast/blast_tabular_out.h | 2 +-
include/seqan/consensus.h | 2 +-
include/seqan/consensus/consensus_aligner.h | 2 +-
include/seqan/consensus/consensus_aligner_interface.h | 2 +-
include/seqan/consensus/consensus_alignment_options.h | 2 +-
include/seqan/consensus/consensus_base.h | 2 +-
include/seqan/consensus/consensus_builder.h | 2 +-
include/seqan/consensus/consensus_library.h | 2 +-
include/seqan/consensus/consensus_realign.h | 2 +-
include/seqan/consensus/consensus_score.h | 2 +-
include/seqan/consensus/overlap_info_computation.h | 2 +-
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util/cmake/FindSDE.cmake | 2 +-
util/cmake/FindUmesimd.cmake | 2 +-
util/cmake/GetCurrentDate.cmake | 2 +-
util/cmake/GetCurrentDate.cpp | 2 +-
util/cmake/SeqAnBuildSystem.cmake | 10 ++++++++--
util/cmake/SeqAnConsistentFPFlags.cmake | 2 +-
util/cmake/SeqAnContribs.cmake | 2 +-
util/cmake/SeqAnCtdSetup.cmake | 2 +-
util/cmake/SeqAnSimdUtility.cmake | 2 +-
util/cmake/SeqAnUsabilityAnalyzer.cmake | 2 +-
util/cmake/SetCPackSystemName.cmake | 2 +-
util/cmake/ctd/COPYRIGHT | 2 +-
util/cmake/ctd/LICENSE | 2 +-
util/cmake/package.cmake | 2 +-
util/cmake/seqan-config.cmake | 2 +-
util/py_lib/seqan/LICENSE | 2 +-
util/skel/app_template/LICENSE | 2 +-
util/skel/app_template/app.cpp | 2 +-
util/skel/demo_template/demo.cpp | 2 +-
util/skel/header_template/header.h | 2 +-
util/skel/header_template/library_header.h | 2 +-
util/skel/module_template/header.h | 2 +-
util/skel/module_template/module.h | 2 +-
util/skel/test_template/test.cpp | 2 +-
util/skel/test_template/test.h | 2 +-
1226 files changed, 1246 insertions(+), 1242 deletions(-)
--
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