[med-svn] [libbpp-popgen] 03/03: Version 2.3.2.

[Julien Dutheil]

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jdutheil-guest pushed a commit to branch master
in repository libbpp-popgen.

commit 27e1f8108cc13ded22801041e4a6a9e888cf9248
Author: Julien Y. Dutheil <dutheil at evolbio.mpg.de>
Date:   Tue Feb 6 13:51:44 2018 +0100

    Version 2.3.2.
---
 debian/changelog                      |  6 ++++++
 debian/control                        | 10 +++++-----
 debian/patches/series                 |  1 +
 debian/patches/unforce-cxxflags.patch | 17 +++++++++++++++++
 4 files changed, 29 insertions(+), 5 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 965409f..0874933 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+libbpp-popgen (2.3.2-1) UNRELEASED; urgency=medium
+
+  * Standards-Version: 4.1.2
+
+ -- Julien Dutheil <julien.dutheil at univ-montp2.fr>  Tue, 06 Feb 2018 13:46:49 +0200
+
 libbpp-popgen (2.3.1-5) unstable; urgency=medium
 
   * Rebuild with gcc-7
diff --git a/debian/control b/debian/control
index 3ef3c37..49e0963 100644
--- a/debian/control
+++ b/debian/control
@@ -7,9 +7,9 @@ Priority: optional
 Build-Depends: debhelper (>= 10),
                cmake,
                d-shlibs (>= 0.80),
-               libbpp-core-dev (>= 2.3.1),
-               libbpp-seq-dev (>= 2.3.1)
-Standards-Version: 4.1.0
+               libbpp-core-dev (>= 2.3.2),
+               libbpp-seq-dev (>= 2.3.2)
+Standards-Version: 4.1.2
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/libbpp-popgen.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/libbpp-popgen.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
@@ -19,8 +19,8 @@ Architecture: any
 Section: libdevel
 Depends: libbpp-popgen7 (= ${binary:Version}),
          ${misc:Depends},
-         libbpp-core-dev (>= 2.3.1),
-         libbpp-seq-dev (>= 2.3.1)
+         libbpp-core-dev (>= 2.3.2),
+         libbpp-seq-dev (>= 2.3.2)
 Description: Bio++ Population Genetics library development files
  Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  analysis, phylogenetics, molecular evolution and population genetics.
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..af33dcc
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+unforce-cxxflags.patch
diff --git a/debian/patches/unforce-cxxflags.patch b/debian/patches/unforce-cxxflags.patch
new file mode 100644
index 0000000..23f3079
--- /dev/null
+++ b/debian/patches/unforce-cxxflags.patch
@@ -0,0 +1,17 @@
+From: Gert Wollny <gw.fossdev at gmail.com>
+Date: Wed, 29 Jun 2014 16:52:43 +0200
+Subject: Do not override Debian CXX flags
+Comment: Upstream version 2.3.0 now has additional -std=c++11 which might
+         be needed to be added explicitly
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -9,7 +9,7 @@ cmake_minimum_required (VERSION 2.8.11)
+ project (bpp-popgen CXX)
+ 
+ # Compile options
+-set (CMAKE_CXX_FLAGS "-std=c++11 -Wall -Weffc++ -Wshadow -Wconversion")
++set (CMAKE_CXX_FLAGS "-std=c++11 -Wno-deprecated -g")
+ 
+ IF(NOT CMAKE_BUILD_TYPE)
+   SET(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING

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