[med-svn] [libbpp-seq] branch upstream updated (28b4469 -> 0dc6a7e)

[Julien Dutheil]

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jdutheil-guest pushed a change to branch upstream
in repository libbpp-seq.

      from  28b4469   New upstream version 2.3.1
      adds  0dc6a7e   New upstream version 2.3.2

No new revisions were added by this update.

Summary of changes:
 Doxyfile                                           | 477 +++++--------
 src/Bpp/Seq/Alphabet/AlphabetTools.cpp             |   1 +
 src/Bpp/Seq/Alphabet/AlphabetTools.h               |   5 +-
 src/Bpp/Seq/Alphabet/CodonAlphabet.cpp             | 163 +++--
 src/Bpp/Seq/Alphabet/CodonAlphabet.h               | 577 +++++++++++-----
 src/Bpp/Seq/Alphabet/WordAlphabet.cpp              |  14 +-
 src/Bpp/Seq/Alphabet/WordAlphabet.h                | 738 ++++++++++++---------
 src/Bpp/Seq/CodonSiteTools.cpp                     |  13 +-
 src/Bpp/Seq/CodonSiteTools.h                       |   2 +-
 .../Container/VectorProbabilisticSiteContainer.cpp | 187 ------
 .../Container/VectorProbabilisticSiteContainer.h   | 123 ----
 src/Bpp/Seq/SequenceTools.cpp                      |  22 +-
 src/Bpp/Seq/StringSequenceTools.cpp                |   8 +-
 src/Bpp/Seq/SymbolListTools.cpp                    |   4 +-
 test/CMakeLists.txt                                |   2 +
 test/test_alphabets.cpp                            |   9 +
 16 files changed, 1222 insertions(+), 1123 deletions(-)
 delete mode 100644 src/Bpp/Seq/Container/VectorProbabilisticSiteContainer.cpp
 delete mode 100644 src/Bpp/Seq/Container/VectorProbabilisticSiteContainer.h

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