[med-svn] [bowtie2] branch master updated (0b54093 -> ebc7654)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository bowtie2.

      from  0b54093   Update changelog, prepare for release
       new  2805c80   New upstream version 2.3.4.1
       new  5dabc79   Update upstream source from tag 'upstream/2.3.4.1'
       new  4d918d6   Refresh d/patches/reproducible.patch
       new  2a78f1d   Check DEB_BUILD_PROFILES against nocheck, strip trailing white spaces
       new  ebc7654   Update changelog, prepare for release

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 MANUAL                            | 29 ++++++++++++-----------------
 MANUAL.markdown                   |  2 +-
 Makefile                          |  8 ++++----
 NEWS                              |  5 +++++
 VERSION                           |  2 +-
 bowtie2-inspect                   |  1 -
 debian/changelog                  |  8 ++++++++
 debian/patches/reproducible.patch |  4 ++--
 debian/rules                      |  2 ++
 debian/tests/indexing-ref-genome  |  4 ++--
 doc/manual.html                   |  6 +++---
 doc/website/manual.ssi            |  4 ++--
 doc/website/recent_news.ssi       |  5 +++++
 doc/website/rhsidebar.ssi         |  4 ++--
 outq.h                            | 12 ++++++++----
 15 files changed, 57 insertions(+), 39 deletions(-)

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