[med-svn] [Git][med-team/trinityrnaseq][master] 5 commits: fix watch

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
d8056e04 by Michael R. Crusoe at 2018-02-11T04:45:47-08:00
fix watch

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20fbb211 by Michael R. Crusoe at 2018-02-11T04:55:06-08:00
New upstream version 2.5.1+dfsg
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d5a2e951 by Michael R. Crusoe at 2018-02-11T04:55:38-08:00
Update upstream source from tag 'upstream/2.5.1+dfsg'

Update to upstream version '2.5.1+dfsg'
with Debian dir c8feebbacd500a9a363220ddc8fe113ac040322b
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3773d9b0 by Michael R. Crusoe at 2018-02-11T05:08:05-08:00
2.5.1+dfsg

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45363394 by Michael R. Crusoe at 2018-02-11T09:14:29-08:00
Re-add NeedlemanWunschGotohBanded & fix namespace

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21 changed files:

- .gitmodules
- + Analysis/DifferentialExpression/DTE_to_DTU.pl
- + Analysis/DifferentialExpression/GOplot.Rscript
- + Analysis/DifferentialExpression/Glimma.Trinity.Rscript
- Analysis/DifferentialExpression/PtR
- Analysis/DifferentialExpression/R/misc_rnaseq_funcs.R
- Analysis/DifferentialExpression/R/rnaseq_plot_funcs.R
- + Analysis/DifferentialExpression/R/vioplot2.R
- Analysis/DifferentialExpression/analyze_diff_expr.pl
- + Analysis/DifferentialExpression/plot_all_DE_MAplots.Rscript
- + Analysis/DifferentialExpression/plot_all_DE_volcanos.Rscript
- + Analysis/DifferentialExpression/prep_n_run_GOplot.pl
- + Analysis/DifferentialExpression/prune_isoforms_fasta.pl
- + Analysis/DifferentialExpression/prune_isoforms_gtf.pl
- Analysis/DifferentialExpression/run_DE_analysis.pl
- Analysis/DifferentialExpression/run_GOseq.pl
- + Analysis/DifferentialExpression/validate_UP_subset.Rscript
- Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl
- Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
- + Analysis/FL_reconstruction_analysis/util/blat_psl_to_align_summary_stats.pl
- + Analysis/FL_reconstruction_analysis/util/blat_query_top_hit_extractor.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/cd46bb1150f3fc470888efa37a4b37abce3719ce...45363394b4b284c0cb9012dc5bb10aa36d9bf1a6

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/compare/cd46bb1150f3fc470888efa37a4b37abce3719ce...45363394b4b284c0cb9012dc5bb10aa36d9bf1a6
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