[med-svn] [Git][med-team/samtools][master] 5 commits: New upstream version 1.7

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / samtools


Commits:
d3c6ed11 by Andreas Tille at 2018-02-14T09:50:25+01:00
New upstream version 1.7
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e27e46fb by Andreas Tille at 2018-02-14T09:50:51+01:00
Update upstream source from tag 'upstream/1.7'

Update to upstream version '1.7'
with Debian dir fe1426d99a1e800c51b64f733eaa53a2119e1b2b
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77f81d66 by Andreas Tille at 2018-02-14T09:51:12+01:00
New upstream version

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fffda22f by Andreas Tille at 2018-02-14T09:51:42+01:00
Standards-Version: 4.1.3

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8fde52ae by Andreas Tille at 2018-02-14T10:00:06+01:00
TODO: Adpapt patches

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27 changed files:

- .appveyor.yml
- Makefile
- NEWS
- README
- bam.h
- bam_markdup.c
- bam_quickcheck.c
- bam_sort.c
- bam_tview_curses.c
- bamshuf.c
- bamtk.c
- bedcov.c
- bedidx.c
- + bedidx.h
- cut_target.c
- debian/changelog
- debian/control
- dict.c
- + lz4/LICENSE
- + lz4/lz4.c
- + lz4/lz4.h
- misc/maq2sam.c
- misc/md5fa.c
- misc/samtools_tab_completion
- misc/wgsim.1
- sam_header.c
- sam_utils.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/samtools/compare/931933e085e8a0d61fd17c1c7e4654a3c9eaffb9...8fde52aef53f28113a0cc9c5dc52377830e1fe61

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View it on GitLab: https://salsa.debian.org/med-team/samtools/compare/931933e085e8a0d61fd17c1c7e4654a3c9eaffb9...8fde52aef53f28113a0cc9c5dc52377830e1fe61
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