[med-svn] [Git][med-team/bcftools][master] Follow hint of Graham Inggs to skip single test that is new in this version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bcftools


Commits:
b0ea4fae by Andreas Tille at 2018-02-20T16:33:06+01:00
Follow hint of Graham Inggs to skip single test that is new in this version

- - - - -


3 changed files:

- debian/changelog
- debian/patches/series
- + debian/patches/skip_new_test_failing_on_32bit.patch


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+bcftools (1.7-2) unstable; urgency=medium
+
+  * Team upload.
+  * Follow hint of Graham Inggs to skip single test that is new in this version
+    Closes: #890704
+
+ -- Andreas Tille <tille at debian.org>  Tue, 20 Feb 2018 16:32:47 +0100
+
 bcftools (1.7-1) unstable; urgency=medium
 
   * Team upload


=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 tests-pluginpath.patch
+skip_new_test_failing_on_32bit.patch


=====================================
debian/patches/skip_new_test_failing_on_32bit.patch
=====================================
--- /dev/null
+++ b/debian/patches/skip_new_test_failing_on_32bit.patch
@@ -0,0 +1,22 @@
+Author: Graham Inggs <ginggs at debian.org>
+Last-Update: Sun, 18 Feb 2018 12:06:22 +0200
+Bug-Debian: https://bugs.debian.org/890704
+Bug-Upstream: https://github.com/samtools/bcftools/issues/744
+Description: Skip single test causing new failures
+ This is a new test that was added in 1.7, so it is not a regression.
+ .
+ One option is to simply skip it for now.
+ .
+ FIXME: This workaround needs to be reconsidered in future versions
+
+--- a/test/test.pl
++++ b/test/test.pl
+@@ -132,7 +132,7 @@ test_vcf_query($opts,in=>'view.filter',o
+ test_vcf_query($opts,in=>'query.filter.3',out=>'query.51.out',args=>q[-f'[\\t%GT\\n]\\n' -i'GT~"1" && GT~"2"']);
+ test_vcf_query($opts,in=>'query.filter.3',out=>'query.52.out',args=>q[-f'[\\t%GT\\n]\\n' -i'GT~"1" &  GT~"2"']);
+ test_vcf_query($opts,in=>'query.filter.3',out=>'query.53.out',args=>q[-f'%POS[\\t%GT]\\n' -i'COUNT(GT="het")=1']);
+-test_vcf_query($opts,in=>'filter.5',out=>'query.54.out',args=>q[-f'[%POS  %SAMPLE  %AD\\n]\\n' -i'AD[:0]+AD[:1] > 12']);
++#test_vcf_query($opts,in=>'filter.5',out=>'query.54.out',args=>q[-f'[%POS  %SAMPLE  %AD\\n]\\n' -i'AD[:0]+AD[:1] > 12']);
+ test_vcf_query($opts,in=>'query.filter.4',out=>'query.55.out',args=>q[-f'%POS\\t%REF\\t%ALT[\\t%GT]\\n' -e'TYPE!="snp" || ALT="*"']);
+ test_vcf_norm($opts,in=>'norm',out=>'norm.out',fai=>'norm',args=>'-cx');
+ test_vcf_norm($opts,in=>'norm.split',out=>'norm.split.out',args=>'-m-');



View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/b0ea4fae718cf8bdc8a3779042ea2222a631df2a

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View it on GitLab: https://salsa.debian.org/med-team/bcftools/commit/b0ea4fae718cf8bdc8a3779042ea2222a631df2a
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