[med-svn] [insighttoolkit] branch master updated (d5eb9df -> 83a776e)
Gert Wollny
gewo at moszumanska.debian.org
Wed Jan 31 18:24:56 UTC 2018
This is an automated email from the git hooks/post-receive script.
gewo pushed a change to branch master
in repository insighttoolkit.
from d5eb9df correctly set standards version
new 17b6cb1 New upstream version 4.13.0-dfsg1
new 73e7fa7 Update upstream source from tag 'upstream/4.13.0-dfsg1'
new 476b6a9 d/rules: update version
new 2290b91 d/control: update with 'make -f d/rules control-file'
new 33b6258 d/control: Add libgtest-dev to depends
new 8478fd3 d/rules: Set GOOGLETEST and MINC to system version
new d99e79d Update control file
new cddbfe5 d/copyright: exclude gtest and some doxygen javascript
new db3d3f2 Update patches
new 91ca125 d/p/disable-doxygen: don't do anything if doxygen is disabled
new 987308f d/rules: Set gtest root
new e10dd12 correct gtest simplification
new 8632f41 d/p:Add patch to fix minc/hdf5 include
new 4da7651 d/copyright: Add new files to copyright list
new 658913d d/p: remove obsolete patches
new 3b4b99d d/: Add lintian overides for the source package
new 9e93d91 Update changelog for upload to experimental
new 1c5676f d/p/minc: Disable one IO test because it fails on i386
new c630e01 d/rules: remove the gcc-7 transition thingy
new f2b0768 d/control: insighttoolkit4-python - add dependency on Python
new 83a776e Update changelog
The 21 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.circleci/config.yml | 80 +
CMake/CTestCustom.cmake.in | 3 +
CMake/FindGTest.cmake | 214 +++
CMake/FindICU.cmake | 350 ++++
CMake/GenerateExportHeader.cmake | 80 +-
CMake/GoogleTest.cmake | 73 +
CMake/ITKConfig.cmake.in | 32 +-
CMake/ITKInternalConfig.cmake | 47 +
CMake/ITKModuleAPI.cmake | 47 +-
CMake/ITKModuleEnablement.cmake | 2 +-
CMake/ITKModuleExternal.cmake | 17 +
CMake/ITKModuleInfo.cmake.in | 1 +
CMake/ITKModuleMacros.cmake | 55 +-
CMake/ITKModuleTest.cmake | 13 +-
CMake/UseITK.cmake | 143 +-
.../itkTargetLinkLibrariesWithDynamicLookup.cmake | 8 +-
CMakeLists.txt | 44 +-
CONTRIBUTING.md | 328 +++-
.../DigitallyReconstructedRadiograph1.cxx | 4 +-
.../DicomSliceReadPythonOutputBaseline.png.md5 | 2 +-
.../DicomSliceReadPythonOutputBaseline.png.sha512 | 2 +-
Examples/IO/test/CMakeLists.txt | 2 +-
Examples/Installation/CMakeLists.txt | 2 +-
Examples/RegistrationITKv3/BSplineWarping1.cxx | 4 +-
Examples/RegistrationITKv3/BSplineWarping2.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration12.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration13.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration14.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration15.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration16.cxx | 8 +-
.../RegistrationITKv3/DeformableRegistration17.cxx | 8 +-
.../RegistrationITKv3/DeformableRegistration2.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration3.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration5.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration7.cxx | 4 +-
.../RegistrationITKv3/DeformableRegistration8.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration1.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration10.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration11.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration12.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration13.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration14.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration15.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration16.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration17.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration18.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration19.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration2.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration20.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration3.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration4.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration5.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration6.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration7.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration8.cxx | 4 +-
Examples/RegistrationITKv3/ImageRegistration9.cxx | 4 +-
.../RegistrationITKv3/IterativeClosestPoint1.cxx | 4 +-
.../ModelToImageRegistration1.cxx | 4 +-
.../ModelToImageRegistration2.cxx | 4 +-
.../MultiResImageRegistration1.cxx | 4 +-
.../MultiResImageRegistration2.cxx | 4 +-
.../MultiResImageRegistration3.cxx | 4 +-
.../MultiStageImageRegistration1.cxx | 2 +-
.../HoughTransform2DCirclesImageFilter.cxx | 16 +-
.../HoughTransform2DLinesImageFilter.cxx | 2 +-
Examples/Statistics/WeightedSampleStatistics.cxx | 2 +-
GettingStarted.md | 32 +
GettingStarted.txt | 29 -
ISSUE_TEMPLATE.md | 48 +
Modules/Bridge/VTK/include/itkVTKImageExportBase.h | 2 +-
.../Deprecated/include/itkBalloonForceFilter.h | 2 +-
.../Deprecated/include/itkDeformableMesh3DFilter.h | 2 +-
.../itkImageRegionMultidimensionalSplitter.h | 4 +-
.../include/itkNonThreadedShrinkImageFilter.h | 2 +-
.../Deprecated/include/itkReflectImageFilter.h | 2 +-
.../include/itkShiftScaleInPlaceImageFilter.h | 8 +-
.../itkTransformToDisplacementFieldSource.h | 8 +-
.../include/itkTwoOutputExampleImageFilter.h | 2 +-
.../include/itkAddConstantToImageFilter.h | 2 +-
.../itkDeformationFieldJacobianDeterminantFilter.h | 4 +-
.../include/itkDeformationFieldSource.h | 8 +-
.../include/itkDivideByConstantImageFilter.h | 2 +-
.../itkExponentialDeformationFieldImageFilter.h | 4 +-
.../include/itkGradientToMagnitudeImageFilter.h | 2 +-
.../include/itkImageToVectorImageFilter.h | 2 +-
.../itkInverseDeformationFieldImageFilter.h | 10 +-
...tkIterativeInverseDeformationFieldImageFilter.h | 4 +-
.../V3Compatibility/include/itkKernelFunction.h | 6 +-
.../include/itkMultiplyByConstantImageFilter.h | 2 +-
.../include/itkOtsuThresholdImageCalculator.h | 2 +-
.../include/itkSubtractConstantFromImageFilter.h | 2 +-
.../include/itkTransformToDeformationFieldSource.h | 10 +-
.../V3Compatibility/test/CMakeLists.txt | 2 +-
.../test/itkAddConstantToImageFilterTest.cxx | 93 +-
.../test/itkDivideByConstantImageFilterTest.cxx | 114 +-
...kExponentialDeformationFieldImageFilterTest.cxx | 4 +-
.../test/itkMultiplyByConstantImageFilterTest.cxx | 92 +-
.../itkSubtractConstantFromImageFilterTest.cxx | 93 +-
.../Common/CMake/itkCheckPrivateDynamicCast.cmake | 4 +-
Modules/Core/Common/ITKKWStyleOverwrite.txt | 1 +
.../include/compilers/ITK_COMPILER_INFO_MSVC_CXX.h | 2 +-
.../itkAtanRegularizedHeavisideStepFunction.h | 2 +-
.../include/itkAutoPointerDataObjectDecorator.h | 2 +-
.../include/itkBSplineDerivativeKernelFunction.h | 2 +-
.../itkBSplineInterpolationWeightFunction.h | 2 +-
.../Core/Common/include/itkBSplineKernelFunction.h | 2 +-
Modules/Core/Common/include/itkBarrier.h | 2 +-
.../Common/include/itkBinaryOperationConcept.h | 8 +-
.../include/itkBinaryThresholdSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkBoundingBox.h | 2 +-
Modules/Core/Common/include/itkByteSwapper.h | 2 +-
Modules/Core/Common/include/itkCellInterface.h | 2 +-
.../Core/Common/include/itkCellInterfaceVisitor.h | 4 +-
Modules/Core/Common/include/itkCommand.h | 10 +-
Modules/Core/Common/include/itkConditionVariable.h | 2 +-
.../itkConicShellInteriorExteriorSpatialFunction.h | 2 +-
.../Core/Common/include/itkCreateObjectFunction.h | 2 +-
Modules/Core/Common/include/itkDataObject.h | 8 +-
.../Core/Common/include/itkDataObjectDecorator.h | 2 +-
Modules/Core/Common/include/itkDirectory.h | 2 +-
Modules/Core/Common/include/itkDomainThreader.h | 2 +-
Modules/Core/Common/include/itkDynamicLoader.h | 2 +-
.../itkEllipsoidInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkEquivalencyTable.h | 2 +-
Modules/Core/Common/include/itkExceptionObject.h | 15 +-
.../Core/Common/include/itkExtractImageFilter.h | 2 +-
Modules/Core/Common/include/itkFastMutexLock.h | 2 +-
Modules/Core/Common/include/itkFileOutputWindow.h | 2 +-
.../include/itkFiniteCylinderSpatialFunction.h | 2 +-
.../Common/include/itkFrustumSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkFunctionBase.h | 2 +-
.../include/itkGaussianDerivativeSpatialFunction.h | 2 +-
.../Common/include/itkGaussianKernelFunction.h | 2 +-
Modules/Core/Common/include/itkGaussianOperator.h | 4 +-
.../Common/include/itkGaussianSpatialFunction.h | 2 +-
.../Core/Common/include/itkHeavisideStepFunction.h | 2 +-
.../Common/include/itkHeavisideStepFunctionBase.h | 2 +-
Modules/Core/Common/include/itkHexahedronCell.h | 2 +-
Modules/Core/Common/include/itkImage.h | 2 +-
Modules/Core/Common/include/itkImageBase.h | 13 +-
Modules/Core/Common/include/itkImageBase.hxx | 13 +
Modules/Core/Common/include/itkImageDuplicator.h | 2 +-
Modules/Core/Common/include/itkImageIORegion.h | 2 +-
Modules/Core/Common/include/itkImageRegion.h | 2 +-
Modules/Core/Common/include/itkImageSource.h | 2 +-
.../Core/Common/include/itkImageToImageFilter.h | 2 +-
.../Common/include/itkImageToImageFilterDetail.h | 105 ++
Modules/Core/Common/include/itkImageTransformer.h | 2 +-
.../Core/Common/include/itkImportImageContainer.h | 2 +-
Modules/Core/Common/include/itkImportImageFilter.h | 2 +-
.../Core/Common/include/itkInPlaceImageFilter.h | 2 +-
.../include/itkInteriorExteriorSpatialFunction.h | 2 +-
.../Core/Common/include/itkKernelFunctionBase.h | 2 +-
Modules/Core/Common/include/itkLightObject.h | 2 +-
.../Core/Common/include/itkLightProcessObject.h | 2 +-
Modules/Core/Common/include/itkLineCell.h | 2 +-
Modules/Core/Common/include/itkLineIterator.h | 2 +-
Modules/Core/Common/include/itkLogger.h | 2 +-
Modules/Core/Common/include/itkLoggerBase.h | 2 +-
Modules/Core/Common/include/itkLoggerManager.h | 2 +-
Modules/Core/Common/include/itkLoggerOutput.h | 2 +-
.../Core/Common/include/itkLoggerThreadWrapper.h | 2 +-
Modules/Core/Common/include/itkMacro.h | 28 +-
Modules/Core/Common/include/itkMath.h | 4 +-
.../Common/include/itkMatrixResizeableDataObject.h | 2 +-
Modules/Core/Common/include/itkMemoryProbe.h | 2 +-
.../Core/Common/include/itkMemoryUsageObserver.h | 4 +-
.../itkMersenneTwisterRandomVariateGenerator.h | 16 +-
Modules/Core/Common/include/itkMetaDataObject.h | 5 +-
.../Core/Common/include/itkMetaDataObjectBase.h | 2 +-
.../include/itkMinimumMaximumImageCalculator.h | 2 +-
Modules/Core/Common/include/itkMultiThreader.h | 36 +-
Modules/Core/Common/include/itkMultipleLogOutput.h | 2 +-
Modules/Core/Common/include/itkMutexLock.h | 2 +-
.../Core/Common/include/itkNeighborhoodIterator.h | 113 +-
Modules/Core/Common/include/itkObject.h | 2 +-
Modules/Core/Common/include/itkObjectFactoryBase.h | 15 +-
Modules/Core/Common/include/itkObjectStore.h | 2 +-
Modules/Core/Common/include/itkOctree.h | 2 +-
Modules/Core/Common/include/itkOutputWindow.h | 2 +-
.../itkPhasedArray3DSpecialCoordinatesImage.h | 2 +-
Modules/Core/Common/include/itkPoint.hxx | 1 -
Modules/Core/Common/include/itkPointSet.h | 2 +-
.../Core/Common/include/itkPointSetToImageFilter.h | 2 +-
Modules/Core/Common/include/itkPolygonCell.h | 2 +-
.../Common/include/itkPriorityQueueContainer.h | 2 +-
Modules/Core/Common/include/itkProcessObject.h | 43 +-
.../Core/Common/include/itkProgressAccumulator.h | 2 +-
Modules/Core/Common/include/itkQuadraticEdgeCell.h | 2 +-
.../Core/Common/include/itkQuadraticTriangleCell.h | 2 +-
Modules/Core/Common/include/itkQuadrilateralCell.h | 2 +-
.../Common/include/itkRandomVariateGeneratorBase.h | 2 +-
Modules/Core/Common/include/itkRealTimeClock.h | 2 +-
Modules/Core/Common/include/itkResourceProbe.h | 11 +
Modules/Core/Common/include/itkResourceProbe.hxx | 114 +-
.../include/itkResourceProbesCollectorBase.h | 16 +-
.../include/itkResourceProbesCollectorBase.hxx | 77 +-
.../Common/include/itkSimpleDataObjectDecorator.h | 2 +-
.../itkSinRegularizedHeavisideStepFunction.h | 2 +-
Modules/Core/Common/include/itkSmapsFileParser.h | 4 +-
Modules/Core/Common/include/itkSparseFieldLayer.h | 2 +-
Modules/Core/Common/include/itkSparseImage.h | 2 +-
Modules/Core/Common/include/itkSpatialFunction.h | 2 +-
.../Common/include/itkSpecialCoordinatesImage.h | 2 +-
.../Core/Common/include/itkSphereSpatialFunction.h | 2 +-
.../Core/Common/include/itkStdStreamLogOutput.h | 2 +-
.../Core/Common/include/itkStoppingCriterionBase.h | 2 +-
.../Core/Common/include/itkStreamingImageFilter.h | 2 +-
.../Common/include/itkSymmetricEigenAnalysis.hxx | 94 +-
...etricEllipsoidInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkTetrahedronCell.h | 2 +-
Modules/Core/Common/include/itkTextOutput.h | 2 +-
Modules/Core/Common/include/itkThreadJob.h | 66 +-
Modules/Core/Common/include/itkThreadLogger.h | 2 +-
Modules/Core/Common/include/itkThreadPool.h | 285 +---
Modules/Core/Common/include/itkThreadSupport.h | 4 +-
.../Common/include/itkThreadedDomainPartitioner.h | 2 +-
.../include/itkThreadedImageRegionPartitioner.h | 2 +-
.../itkThreadedIndexedContainerPartitioner.h | 2 +-
.../include/itkThreadedIteratorRangePartitioner.h | 2 +-
Modules/Core/Common/include/itkTimeProbe.h | 2 +-
.../itkTorusInteriorExteriorSpatialFunction.h | 2 +-
Modules/Core/Common/include/itkTreeChangeEvent.h | 2 +-
Modules/Core/Common/include/itkTreeContainer.h | 2 +-
Modules/Core/Common/include/itkTreeContainerBase.h | 2 +-
Modules/Core/Common/include/itkTreeNode.h | 2 +-
Modules/Core/Common/include/itkTriangleCell.h | 2 +-
.../Common/include/itkUnaryFunctorImageFilter.h | 2 +-
.../Common/include/itkUnaryFunctorImageFilter.hxx | 80 +-
.../Core/Common/include/itkVariableLengthVector.h | 108 +-
.../Common/include/itkVariableLengthVector.hxx | 26 +-
Modules/Core/Common/include/itkVectorImage.h | 2 +-
Modules/Core/Common/include/itkVersion.h | 2 +-
Modules/Core/Common/include/itkVersor.hxx | 2 +-
Modules/Core/Common/include/itkVertexCell.h | 2 +-
.../Core/Common/include/itkXMLFileOutputWindow.h | 2 +-
.../Core/Common/include/itk_compiler_detection.h | 4 +-
Modules/Core/Common/src/CMakeLists.txt | 4 +-
Modules/Core/Common/src/itkExceptionObject.cxx | 19 +-
.../Core/Common/src/itkFloatingPointExceptions.cxx | 4 +-
Modules/Core/Common/src/itkMetaDataObject.cxx | 2 +
Modules/Core/Common/src/itkMultiThreader.cxx | 188 +--
.../Core/Common/src/itkMultiThreaderNoThreads.cxx | 72 +-
.../Core/Common/src/itkMultiThreaderPThreads.cxx | 54 -
.../Core/Common/src/itkMultiThreaderWinThreads.cxx | 43 +-
Modules/Core/Common/src/itkObjectFactoryBase.cxx | 308 +++-
Modules/Core/Common/src/itkPThreadPool.cxx | 187 ---
Modules/Core/Common/src/itkProcessObject.cxx | 59 +-
Modules/Core/Common/src/itkThreadPool.cxx | 406 ++---
Modules/Core/Common/src/itkThreadPoolPosix.cxx | 154 ++
Modules/Core/Common/src/itkThreadPoolWin32.cxx | 126 ++
Modules/Core/Common/src/itkTimeStamp.cxx | 2 +-
Modules/Core/Common/src/itkWinThreadPool.cxx | 188 ---
Modules/Core/Common/test/CMakeLists.txt | 3 +-
Modules/Core/Common/test/itkBarrierTest.cxx | 25 +-
Modules/Core/Common/test/itkByteSwapTest.cxx | 26 +
Modules/Core/Common/test/itkColorTableTest.cxx | 2 +
.../test/itkDataObjectAndProcessObjectTest.cxx | 53 +
Modules/Core/Common/test/itkDataObjectTest.cxx | 2 +-
Modules/Core/Common/test/itkFactoryTestLib.cxx | 1 +
Modules/Core/Common/test/itkFilterDispatchTest.cxx | 2 +-
Modules/Core/Common/test/itkFixedArrayTest.cxx | 4 +
.../test/itkGaussianDerivativeOperatorTest.cxx | 7 +-
Modules/Core/Common/test/itkLightObjectTest.cxx | 2 +
.../Common/test/itkLoggerThreadWrapperTest.cxx | 2 +-
.../test/itkMemoryProbesCollecterBaseTest.cxx | 7 +-
Modules/Core/Common/test/itkMetaDataObjectTest.cxx | 2 +
Modules/Core/Common/test/itkObjectFactoryTest.cxx | 8 +-
Modules/Core/Common/test/itkObjectFactoryTest2.cxx | 1 +
Modules/Core/Common/test/itkPromoteType.cxx | 2 +
.../Common/test/itkSimpleFilterWatcherTest.cxx | 2 +-
Modules/Core/Common/test/itkTimeProbeTest2.cxx | 3 +
Modules/Core/Common/test/itkTimeProbesTest.cxx | 11 +
Modules/Core/Common/wrapping/ITKCommonBase.wrap | 6 +
.../wrapping/itkFloatingPointExceptions.wrap | 1 +
.../wrapping/itkImageConstIterator.notwrapped | 4 +-
.../itkImageConstIteratorWithIndex.notwrapped | 4 +-
.../Common/wrapping/itkImageIterator.notwrapped | 4 +-
.../wrapping/itkImageIteratorWithIndex.notwrapped | 4 +-
...itkImageLinearConstIteratorWithIndex.notwrapped | 4 +-
.../itkImageLinearIteratorWithIndex.notwrapped | 4 +-
...itkImageRandomConstIteratorWithIndex.notwrapped | 4 +-
.../itkImageRandomIteratorWithIndex.notwrapped | 4 +-
...omNonRepeatingConstIteratorWithIndex.notwrapped | 4 +-
...eRandomNonRepeatingIteratorWithIndex.notwrapped | 4 +-
.../itkImageRegionConstIterator.notwrapped | 4 +-
...itkImageRegionConstIteratorWithIndex.notwrapped | 4 +-
.../wrapping/itkImageRegionIterator.notwrapped | 4 +-
.../itkImageRegionIteratorWithIndex.notwrapped | 4 +-
.../include/itkDenseFiniteDifferenceImageFilter.h | 2 +-
.../include/itkFiniteDifferenceFunction.h | 2 +-
.../include/itkFiniteDifferenceImageFilter.h | 2 +-
.../include/itkFiniteDifferenceSparseImageFilter.h | 2 +-
.../itkFiniteDifferenceSparseImageFunction.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUDataManager.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUImage.h | 2 +-
.../GPUCommon/include/itkGPUImageDataManager.h | 2 +-
.../GPUCommon/include/itkGPUImageToImageFilter.h | 2 +-
.../GPUCommon/include/itkGPUInPlaceImageFilter.h | 2 +-
.../Core/GPUCommon/include/itkGPUKernelManager.h | 2 +-
Modules/Core/GPUCommon/include/itkGPUReduction.h | 2 +-
.../include/itkGPUUnaryFunctorImageFilter.h | 3 +-
Modules/Core/GPUCommon/src/itkGPUKernelManager.cxx | 4 +-
.../itkGPUDenseFiniteDifferenceImageFilter.h | 3 +-
.../include/itkGPUFiniteDifferenceFunction.h | 3 +-
.../include/itkGPUFiniteDifferenceImageFilter.h | 2 +-
.../ImageAdaptors/include/itkAbsImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAcosImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAddImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAsinImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkAtanImageAdaptor.h | 2 +-
.../include/itkComplexConjugateImageAdaptor.h | 2 +-
.../include/itkComplexToImaginaryImageAdaptor.h | 2 +-
.../include/itkComplexToModulusImageAdaptor.h | 2 +-
.../include/itkComplexToPhaseImageAdaptor.h | 2 +-
.../include/itkComplexToRealImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkCosImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkExpImageAdaptor.h | 2 +-
.../include/itkExpNegativeImageAdaptor.h | 2 +-
.../Core/ImageAdaptors/include/itkImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkLog10ImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkLogImageAdaptor.h | 2 +-
.../include/itkNthElementImageAdaptor.h | 2 +-
.../include/itkRGBToLuminanceImageAdaptor.h | 2 +-
.../include/itkRGBToVectorImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkSinImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkSqrtImageAdaptor.h | 2 +-
.../ImageAdaptors/include/itkTanImageAdaptor.h | 2 +-
.../include/itkVectorImageToImageAdaptor.h | 2 +-
.../include/itkVectorToRGBImageAdaptor.h | 2 +-
.../include/itkBSplineDecompositionImageFilter.h | 2 +-
.../include/itkBSplineInterpolateImageFunction.h | 4 +-
.../include/itkBSplineResampleImageFunction.h | 2 +-
.../include/itkBinaryThresholdImageFunction.h | 2 +-
.../include/itkCentralDifferenceImageFunction.h | 2 +-
.../include/itkCovarianceImageFunction.h | 2 +-
.../include/itkExtrapolateImageFunction.h | 2 +-
.../include/itkGaussianBlurImageFunction.h | 2 +-
.../include/itkGaussianDerivativeImageFunction.h | 2 +-
.../include/itkGaussianInterpolateImageFunction.h | 32 +-
.../itkGaussianInterpolateImageFunction.hxx | 43 +-
.../Core/ImageFunction/include/itkImageFunction.h | 2 +-
.../include/itkInterpolateImageFunction.h | 2 +-
...itkLabelImageGaussianInterpolateImageFunction.h | 32 +-
...kLabelImageGaussianInterpolateImageFunction.hxx | 43 +-
.../include/itkLinearInterpolateImageFunction.h | 2 +-
.../itkMahalanobisDistanceThresholdImageFunction.h | 2 +-
.../ImageFunction/include/itkMeanImageFunction.h | 2 +-
.../ImageFunction/include/itkMedianImageFunction.h | 2 +-
.../itkNearestNeighborExtrapolateImageFunction.h | 2 +-
.../itkNearestNeighborInterpolateImageFunction.h | 2 +-
.../itkNeighborhoodBinaryThresholdImageFunction.h | 2 +-
.../include/itkNeighborhoodOperatorImageFunction.h | 2 +-
.../include/itkRayCastInterpolateImageFunction.h | 31 +-
.../include/itkRayCastInterpolateImageFunction.hxx | 14 +-
.../include/itkScatterMatrixImageFunction.h | 2 +-
.../include/itkSumOfSquaresImageFunction.h | 2 +-
.../include/itkVarianceImageFunction.h | 2 +-
.../include/itkVectorInterpolateImageFunction.h | 2 +-
.../itkVectorLinearInterpolateImageFunction.h | 2 +-
...polateNearestNeighborExtrapolateImageFunction.h | 2 +-
.../include/itkVectorMeanImageFunction.h | 2 +-
...VectorNearestNeighborInterpolateImageFunction.h | 2 +-
.../itkWindowedSincInterpolateImageFunction.h | 2 +-
.../itkRayCastInterpolateImageFunctionTest.cxx | 9 +-
.../Mesh/include/itkAutomaticTopologyMeshSource.h | 2 +-
.../Core/Mesh/include/itkBinaryMask3DMeshSource.h | 2 +-
.../Mesh/include/itkConnectedRegionsMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkImageToMeshFilter.h | 2 +-
.../Mesh/include/itkImageToParametricSpaceFilter.h | 2 +-
.../Mesh/include/itkInteriorExteriorMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkMesh.h | 2 +-
Modules/Core/Mesh/include/itkMeshRegion.h | 2 +-
Modules/Core/Mesh/include/itkMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkMeshToMeshFilter.h | 2 +-
.../itkParametricSpaceToImageSpaceMeshFilter.h | 2 +-
.../Core/Mesh/include/itkRegularSphereMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkSimplexMesh.h | 2 +-
.../include/itkSimplexMeshAdaptTopologyFilter.h | 2 +-
.../include/itkSimplexMeshToTriangleMeshFilter.h | 2 +-
.../Mesh/include/itkSimplexMeshVolumeCalculator.h | 2 +-
Modules/Core/Mesh/include/itkSphereMeshSource.h | 2 +-
Modules/Core/Mesh/include/itkTransformMeshFilter.h | 2 +-
.../include/itkTriangleMeshToBinaryImageFilter.h | 2 +-
.../include/itkTriangleMeshToSimplexMeshFilter.h | 2 +-
Modules/Core/Mesh/include/itkVTKPolyDataReader.h | 2 +-
Modules/Core/Mesh/include/itkVTKPolyDataWriter.h | 2 +-
Modules/Core/Mesh/include/itkWarpMeshFilter.h | 2 +-
Modules/Core/Mesh/test/CMakeLists.txt | 17 +
.../Mesh/test/itkMeshSourceGraftOutputTest.cxx | 2 +-
.../Core/QuadEdgeMesh/include/itkQuadEdgeMesh.h | 2 +-
...geMeshEulerOperatorCreateCenterVertexFunction.h | 2 +-
...geMeshEulerOperatorDeleteCenterVertexFunction.h | 2 +-
.../itkQuadEdgeMeshEulerOperatorFlipEdgeFunction.h | 2 +-
...itkQuadEdgeMeshEulerOperatorJoinFacetFunction.h | 2 +-
...tkQuadEdgeMeshEulerOperatorJoinVertexFunction.h | 2 +-
...itkQuadEdgeMeshEulerOperatorSplitEdgeFunction.h | 2 +-
...tkQuadEdgeMeshEulerOperatorSplitFacetFunction.h | 2 +-
...kQuadEdgeMeshEulerOperatorSplitVertexFunction.h | 2 +-
.../include/itkQuadEdgeMeshFunctionBase.h | 2 +-
.../QuadEdgeMesh/include/itkQuadEdgeMeshLineCell.h | 2 +-
.../include/itkQuadEdgeMeshPolygonCell.h | 2 +-
.../itkQuadEdgeMeshScalarDataVTKPolyDataWriter.h | 2 +-
.../include/itkQuadEdgeMeshToQuadEdgeMeshFilter.h | 2 +-
.../include/itkQuadEdgeMeshTopologyChecker.h | 2 +-
.../include/itkQuadEdgeMeshZipMeshFunction.h | 2 +-
.../include/itkAffineGeometryFrame.h | 2 +-
.../SpatialObjects/include/itkArrowSpatialObject.h | 2 +-
.../SpatialObjects/include/itkBlobSpatialObject.h | 2 +-
.../SpatialObjects/include/itkBoxSpatialObject.h | 2 +-
.../include/itkContourSpatialObject.h | 2 +-
.../include/itkContourSpatialObjectPoint.h | 2 +-
.../include/itkCylinderSpatialObject.h | 2 +-
.../include/itkDTITubeSpatialObject.h | 2 +-
.../include/itkDTITubeSpatialObjectPoint.h | 2 +-
.../include/itkEllipseSpatialObject.h | 2 +-
.../include/itkGaussianSpatialObject.h | 2 +-
.../SpatialObjects/include/itkGroupSpatialObject.h | 2 +-
.../include/itkImageMaskSpatialObject.h | 2 +-
.../SpatialObjects/include/itkImageSpatialObject.h | 2 +-
.../include/itkLandmarkSpatialObject.h | 2 +-
.../SpatialObjects/include/itkLineSpatialObject.h | 2 +-
.../include/itkLineSpatialObjectPoint.h | 2 +-
.../SpatialObjects/include/itkMeshSpatialObject.h | 2 +-
.../SpatialObjects/include/itkMetaArrowConverter.h | 2 +-
.../SpatialObjects/include/itkMetaBlobConverter.h | 2 +-
.../include/itkMetaContourConverter.h | 2 +-
.../include/itkMetaDTITubeConverter.h | 2 +-
.../include/itkMetaEllipseConverter.h | 2 +-
.../include/itkMetaGaussianConverter.h | 2 +-
.../SpatialObjects/include/itkMetaGroupConverter.h | 2 +-
.../SpatialObjects/include/itkMetaImageConverter.h | 2 +-
.../include/itkMetaImageMaskConverter.h | 2 +-
.../include/itkMetaLandmarkConverter.h | 2 +-
.../SpatialObjects/include/itkMetaLineConverter.h | 2 +-
.../SpatialObjects/include/itkMetaMeshConverter.h | 2 +-
.../include/itkMetaSurfaceConverter.h | 2 +-
.../SpatialObjects/include/itkMetaTubeConverter.h | 2 +-
.../include/itkMetaVesselTubeConverter.h | 2 +-
.../SpatialObjects/include/itkPlaneSpatialObject.h | 2 +-
.../include/itkPointBasedSpatialObject.h | 2 +-
.../include/itkPolygonGroupSpatialObject.h | 2 +-
.../SpatialObjects/include/itkSceneSpatialObject.h | 2 +-
.../Core/SpatialObjects/include/itkSpatialObject.h | 8 +-
.../SpatialObjects/include/itkSpatialObject.hxx | 17 +-
.../include/itkSpatialObjectDuplicator.h | 2 +-
.../include/itkSpatialObjectFactoryBase.h | 2 +-
.../include/itkSpatialObjectProperty.h | 2 +-
.../include/itkSpatialObjectToImageFilter.h | 2 +-
.../itkSpatialObjectToImageStatisticsCalculator.h | 2 +-
.../include/itkSpatialObjectToPointSetFilter.h | 2 +-
.../include/itkSpatialObjectTreeContainer.h | 2 +-
.../include/itkSpatialObjectTreeNode.h | 2 +-
.../include/itkSurfaceSpatialObject.h | 2 +-
.../include/itkSurfaceSpatialObjectPoint.h | 2 +-
.../SpatialObjects/include/itkTubeSpatialObject.h | 2 +-
.../include/itkTubeSpatialObjectPoint.h | 2 +-
.../include/itkVesselTubeSpatialObject.h | 2 +-
.../include/itkVesselTubeSpatialObjectPoint.h | 2 +-
.../test/itkNewMetaObjectTypeTest.cxx | 4 +-
Modules/Core/TestKernel/include/itkGTest.h | 41 +
.../Core/TestKernel/include/itkGTestPredicate.h | 100 ++
.../include/itkGTestTypedefsAndConstructors.h | 149 ++
.../Core/TestKernel/include/itkRandomImageSource.h | 2 +-
.../TestKernel/include/itkTestDriverAfterTest.inc | 10 +-
.../Core/TestKernel/include/itkTestDriverInclude.h | 174 +-
.../include/itkTestingComparisonImageFilter.h | 36 +-
.../include/itkTestingComparisonImageFilter.hxx | 78 +-
.../include/itkTestingExtractSliceImageFilter.h | 2 +-
.../itkTestingStretchIntensityImageFilter.h | 2 +-
.../itkTestingStretchIntensityImageFilter.hxx | 4 +-
Modules/Core/TestKernel/itk-module.cmake | 1 +
Modules/Core/TestKernel/src/CMakeLists.txt | 5 +-
Modules/Core/TestKernel/test/CMakeLists.txt | 10 +
Modules/Core/TestKernel/test/itkGoogleTest.cxx | 96 ++
.../Core/TestKernel/test/itkGoogleTestFixture.cxx | 44 +
.../Core/Transform/include/itkAffineTransform.h | 2 +-
.../itkAzimuthElevationToCartesianTransform.h | 2 +-
.../Transform/include/itkBSplineBaseTransform.h | 4 +-
.../include/itkBSplineDeformableTransform.h | 2 +-
.../Core/Transform/include/itkBSplineTransform.h | 2 +-
.../include/itkBSplineTransformInitializer.h | 2 +-
.../Transform/include/itkCenteredAffineTransform.h | 2 +-
.../include/itkCenteredEuler3DTransform.h | 2 +-
.../include/itkCenteredRigid2DTransform.h | 4 +-
.../include/itkCenteredSimilarity2DTransform.h | 2 +-
.../include/itkCenteredSimilarity2DTransform.hxx | 5 +
.../Core/Transform/include/itkCompositeTransform.h | 2 +-
.../Transform/include/itkCompositeTransform.hxx | 4 +-
...itkElasticBodyReciprocalSplineKernelTransform.h | 2 +-
.../include/itkElasticBodySplineKernelTransform.h | 2 +-
.../Core/Transform/include/itkEuler2DTransform.h | 2 +-
.../Core/Transform/include/itkEuler3DTransform.h | 4 +-
.../itkFixedCenterOfRotationAffineTransform.h | 2 +-
.../Core/Transform/include/itkIdentityTransform.h | 4 +-
.../Core/Transform/include/itkKernelTransform.h | 2 +-
.../include/itkMatrixOffsetTransformBase.h | 3 +-
Modules/Core/Transform/include/itkMultiTransform.h | 2 +-
.../Core/Transform/include/itkMultiTransform.hxx | 2 +-
.../include/itkQuaternionRigidTransform.h | 4 +-
.../Core/Transform/include/itkRigid2DTransform.h | 2 +-
.../include/itkRigid3DPerspectiveTransform.h | 2 +-
.../Core/Transform/include/itkRigid3DTransform.h | 4 +-
.../Transform/include/itkScalableAffineTransform.h | 2 +-
.../include/itkScaleLogarithmicTransform.h | 2 +-
.../include/itkScaleSkewVersor3DTransform.h | 4 +-
Modules/Core/Transform/include/itkScaleTransform.h | 2 +-
.../Transform/include/itkScaleVersor3DTransform.h | 2 +-
.../Transform/include/itkSimilarity2DTransform.h | 4 +-
.../Transform/include/itkSimilarity2DTransform.hxx | 5 +
.../Transform/include/itkSimilarity3DTransform.h | 4 +-
.../itkThinPlateR2LogRSplineKernelTransform.h | 2 +-
.../include/itkThinPlateSplineKernelTransform.h | 2 +-
Modules/Core/Transform/include/itkTransform.h | 4 +-
Modules/Core/Transform/include/itkTransformBase.h | 2 +-
.../Transform/include/itkTranslationTransform.h | 2 +-
.../Transform/include/itkVersorRigid3DTransform.h | 4 +-
.../Core/Transform/include/itkVersorTransform.h | 6 +-
.../include/itkVolumeSplineKernelTransform.h | 2 +-
.../Core/Transform/test/itkMultiTransformTest.cxx | 21 +-
.../Transform/test/itkRigid3DTransformTest.cxx | 2 +-
.../test/itkSimilarity2DTransformTest.cxx | 13 +
.../include/itkAnisotropicDiffusionFunction.h | 4 +-
.../include/itkAnisotropicDiffusionImageFilter.h | 2 +-
.../itkCurvatureAnisotropicDiffusionImageFilter.h | 2 +-
.../itkCurvatureNDAnisotropicDiffusionFunction.h | 2 +-
.../itkGradientAnisotropicDiffusionImageFilter.h | 4 +-
.../itkGradientNDAnisotropicDiffusionFunction.h | 2 +-
.../itkScalarAnisotropicDiffusionFunction.h | 2 +-
.../itkVectorAnisotropicDiffusionFunction.h | 2 +-
...ectorCurvatureAnisotropicDiffusionImageFilter.h | 2 +-
...VectorCurvatureNDAnisotropicDiffusionFunction.h | 2 +-
...VectorGradientAnisotropicDiffusionImageFilter.h | 2 +-
...kVectorGradientNDAnisotropicDiffusionFunction.h | 2 +-
.../include/itkAntiAliasBinaryImageFilter.h | 4 +-
.../include/itkCompositeValleyFunction.h | 2 +-
.../BiasCorrection/include/itkMRASlabIdentifier.h | 2 +-
.../include/itkMRIBiasFieldCorrectionFilter.h | 10 +-
.../include/itkMRIBiasFieldCorrectionFilter.hxx | 2 -
.../include/itkN4BiasFieldCorrectionImageFilter.h | 5 +-
.../itkN4BiasFieldCorrectionImageFilter.hxx | 47 +-
.../itkBinaryClosingByReconstructionImageFilter.h | 2 +-
.../include/itkBinaryDilateImageFilter.h | 2 +-
.../include/itkBinaryErodeImageFilter.h | 2 +-
.../itkBinaryMorphologicalClosingImageFilter.h | 2 +-
.../itkBinaryMorphologicalOpeningImageFilter.h | 2 +-
.../include/itkBinaryMorphologyImageFilter.h | 2 +-
.../itkBinaryOpeningByReconstructionImageFilter.h | 2 +-
.../include/itkBinaryPruningImageFilter.h | 2 +-
.../include/itkBinaryThinningImageFilter.h | 2 +-
.../include/itkDilateObjectMorphologyImageFilter.h | 2 +-
.../include/itkErodeObjectMorphologyImageFilter.h | 2 +-
.../itkFastIncrementalBinaryDilateImageFilter.h | 2 +-
.../include/itkObjectMorphologyImageFilter.h | 2 +-
.../Colormap/include/itkAutumnColormapFunction.h | 2 +-
.../Colormap/include/itkBlueColormapFunction.h | 2 +-
.../Colormap/include/itkColormapFunction.h | 2 +-
.../Colormap/include/itkCoolColormapFunction.h | 2 +-
.../Colormap/include/itkCopperColormapFunction.h | 2 +-
.../Colormap/include/itkCustomColormapFunction.h | 2 +-
.../Colormap/include/itkGreenColormapFunction.h | 2 +-
.../Colormap/include/itkGreyColormapFunction.h | 2 +-
.../Colormap/include/itkHSVColormapFunction.h | 2 +-
.../Colormap/include/itkHotColormapFunction.h | 2 +-
.../Colormap/include/itkJetColormapFunction.h | 2 +-
.../include/itkOverUnderColormapFunction.h | 2 +-
.../Colormap/include/itkRedColormapFunction.h | 2 +-
.../include/itkScalarToRGBColormapImageFilter.h | 2 +-
.../Colormap/include/itkSpringColormapFunction.h | 2 +-
.../Colormap/include/itkSummerColormapFunction.h | 2 +-
.../Colormap/include/itkWinterColormapFunction.h | 2 +-
.../include/itkConvolutionImageFilter.h | 2 +-
.../include/itkConvolutionImageFilterBase.h | 2 +-
.../include/itkFFTConvolutionImageFilter.h | 2 +-
.../itkFFTNormalizedCorrelationImageFilter.h | 8 +-
.../itkMaskedFFTNormalizedCorrelationImageFilter.h | 55 +-
.../include/itkNormalizedCorrelationImageFilter.h | 2 +-
.../include/itkBinaryMinMaxCurvatureFlowFunction.h | 2 +-
.../itkBinaryMinMaxCurvatureFlowImageFilter.h | 2 +-
.../include/itkCurvatureFlowFunction.h | 2 +-
.../include/itkCurvatureFlowImageFilter.h | 2 +-
.../include/itkMinMaxCurvatureFlowFunction.h | 2 +-
.../include/itkMinMaxCurvatureFlowImageFilter.h | 2 +-
.../CurvatureFlow/test/itkCurvatureFlowTest.cxx | 2 +-
.../include/itkInverseDeconvolutionImageFilter.h | 2 +-
.../include/itkIterativeDeconvolutionImageFilter.h | 2 +-
.../include/itkLandweberDeconvolutionImageFilter.h | 2 +-
...tricBlindLeastSquaresDeconvolutionImageFilter.h | 2 +-
...itkProjectedIterativeDeconvolutionImageFilter.h | 2 +-
...itkProjectedLandweberDeconvolutionImageFilter.h | 2 +-
.../itkRichardsonLucyDeconvolutionImageFilter.h | 2 +-
.../include/itkTikhonovDeconvolutionImageFilter.h | 2 +-
.../include/itkWienerDeconvolutionImageFilter.h | 2 +-
...erGaussianKernelNonNullImageOriginTest.nrrd.md5 | 1 +
...aussianKernelNonNullImageOriginTest.nrrd.sha512 | 1 +
.../Filtering/Deconvolution/test/CMakeLists.txt | 3 +-
...indLeastSquaresDeconvolutionImageFilterTest.cxx | 2 +-
.../itkPatchBasedDenoisingBaseImageFilter.h | 2 +-
.../include/itkPatchBasedDenoisingImageFilter.h | 2 +-
...itkDiffusionTensor3DReconstructionImageFilter.h | 2 +-
.../itkTensorFractionalAnisotropyImageFilter.h | 2 +-
.../itkTensorRelativeAnisotropyImageFilter.h | 2 +-
.../itkBSplineExponentialDiffeomorphicTransform.h | 2 +-
...neSmoothingOnUpdateDisplacementFieldTransform.h | 2 +-
.../itkComposeDisplacementFieldsImageFilter.h | 2 +-
.../include/itkConstantVelocityFieldTransform.h | 2 +-
...itkDisplacementFieldJacobianDeterminantFilter.h | 2 +-
.../itkDisplacementFieldToBSplineImageFilter.h | 2 +-
.../include/itkDisplacementFieldTransform.h | 2 +-
.../itkExponentialDisplacementFieldImageFilter.h | 2 +-
.../itkGaussianExponentialDiffeomorphicTransform.h | 2 +-
...anSmoothingOnUpdateDisplacementFieldTransform.h | 2 +-
...hingOnUpdateTimeVaryingVelocityFieldTransform.h | 2 +-
.../itkInverseDisplacementFieldImageFilter.h | 2 +-
.../itkInvertDisplacementFieldImageFilter.h | 2 +-
...kIterativeInverseDisplacementFieldImageFilter.h | 2 +-
.../include/itkLandmarkDisplacementFieldSource.h | 2 +-
.../itkTimeVaryingBSplineVelocityFieldTransform.h | 2 +-
...imeVaryingVelocityFieldIntegrationImageFilter.h | 2 +-
.../include/itkTimeVaryingVelocityFieldTransform.h | 2 +-
.../itkTransformToDisplacementFieldFilter.h | 2 +-
.../itkTransformToDisplacementFieldFilter.hxx | 4 +-
.../include/itkVelocityFieldTransform.h | 2 +-
.../itkApproximateSignedDistanceMapImageFilter.h | 4 +-
.../itkContourDirectedMeanDistanceImageFilter.h | 2 +-
.../include/itkContourMeanDistanceImageFilter.h | 2 +-
.../include/itkDanielssonDistanceMapImageFilter.h | 2 +-
.../itkDirectedHausdorffDistanceImageFilter.h | 2 +-
.../include/itkFastChamferDistanceImageFilter.h | 2 +-
.../include/itkHausdorffDistanceImageFilter.h | 2 +-
.../include/itkIsoContourDistanceImageFilter.h | 2 +-
.../itkSignedDanielssonDistanceMapImageFilter.h | 2 +-
.../itkSignedMaurerDistanceMapImageFilter.h | 2 +-
.../itkSignedMaurerDistanceMapImageFilter.hxx | 8 +-
...ApproximateSignedDistanceMapImageFilterTest.cxx | 153 +-
.../Filtering/FFT/include/itkFFTPadImageFilter.h | 2 +-
.../Filtering/FFT/include/itkFFTShiftImageFilter.h | 4 +-
.../include/itkFullToHalfHermitianImageFilter.h | 2 +-
.../include/itkHalfToFullHermitianImageFilter.h | 2 +-
.../include/itkVnlComplexToComplexFFTImageFilter.h | 2 +-
.../FFT/include/itkVnlForwardFFTImageFilter.h | 2 +-
...tkVnlHalfHermitianToRealInverseFFTImageFilter.h | 2 +-
.../FFT/include/itkVnlInverseFFTImageFilter.h | 2 +-
...tkVnlRealToHalfHermitianForwardFFTImageFilter.h | 2 +-
.../FastMarching/include/itkFastMarchingBase.h | 6 +-
.../include/itkFastMarchingExtensionImageFilter.h | 2 +-
.../itkFastMarchingExtensionImageFilterBase.h | 2 +-
.../include/itkFastMarchingImageFilter.h | 4 +-
.../include/itkFastMarchingImageFilterBase.h | 29 +-
.../include/itkFastMarchingImageFilterBase.hxx | 259 ++-
...tkFastMarchingImageToNodePairContainerAdaptor.h | 2 +-
...FastMarchingNumberOfElementsStoppingCriterion.h | 2 +-
.../itkFastMarchingQuadEdgeMeshFilterBase.h | 2 +-
...stMarchingReachedTargetNodesStoppingCriterion.h | 2 +-
.../include/itkFastMarchingStoppingCriterionBase.h | 2 +-
.../itkFastMarchingThresholdStoppingCriterion.h | 2 +-
.../itkFastMarchingUpwindGradientImageFilter.h | 2 +-
.../itkFastMarchingUpwindGradientImageFilterBase.h | 2 +-
.../FastMarching/test/itkFastMarchingBaseTest.cxx | 2 +-
.../itkFastMarchingStoppingCriterionBaseTest.cxx | 2 +-
.../include/itkGPUAnisotropicDiffusionFunction.h | 3 +-
.../itkGPUAnisotropicDiffusionImageFilter.h | 6 +-
...itkGPUGradientAnisotropicDiffusionImageFilter.h | 3 +-
.../itkGPUGradientNDAnisotropicDiffusionFunction.h | 3 +-
.../itkGPUScalarAnisotropicDiffusionFunction.h | 3 +-
.../include/itkGPUBoxImageFilter.h | 3 +-
.../itkGPUNeighborhoodOperatorImageFilter.h | 3 +-
.../include/itkGPUDiscreteGaussianImageFilter.h | 3 +-
.../GPUSmoothing/include/itkGPUMeanImageFilter.h | 2 +-
.../include/itkGPUBinaryThresholdImageFilter.h | 3 +-
.../itkAbsoluteValueDifferenceImageFilter.h | 2 +-
.../include/itkCheckerBoardImageFilter.h | 2 +-
.../ImageCompare/include/itkSTAPLEImageFilter.h | 2 +-
.../include/itkSimilarityIndexImageFilter.h | 2 +-
.../include/itkSquaredDifferenceImageFilter.h | 2 +-
Modules/Filtering/ImageCompare/test/CMakeLists.txt | 2 +-
.../itkAbsoluteValueDifferenceImageFilterTest.cxx | 2 +-
.../ImageCompare/test/itkSTAPLEImageFilterTest.cxx | 2 +-
.../test/itkSquaredDifferenceImageFilterTest.cxx | 2 +-
.../test/itkTestingComparisonImageFilterTest.cxx | 84 +-
.../ImageCompose/include/itkJoinImageFilter.h | 2 +-
.../include/itkJoinSeriesImageFilter.h | 2 +-
.../ImageFeature/include/itkBilateralImageFilter.h | 2 +-
.../include/itkCannyEdgeDetectionImageFilter.h | 2 +-
.../include/itkDerivativeImageFilter.h | 2 +-
.../include/itkGradientVectorFlowImageFilter.h | 2 +-
.../itkHessian3DToVesselnessMeasureImageFilter.h | 2 +-
.../itkHessianRecursiveGaussianImageFilter.h | 2 +-
.../itkHessianToObjectnessMeasureImageFilter.h | 2 +-
.../itkHoughTransform2DCirclesImageFilter.h | 40 +-
.../itkHoughTransform2DCirclesImageFilter.hxx | 230 ++-
.../include/itkHoughTransform2DLinesImageFilter.h | 9 +-
.../itkHoughTransform2DLinesImageFilter.hxx | 216 +--
.../ImageFeature/include/itkLaplacianImageFilter.h | 2 +-
.../itkLaplacianRecursiveGaussianImageFilter.h | 2 +-
.../include/itkLaplacianSharpeningImageFilter.h | 2 +-
.../include/itkMaskFeaturePointSelectionFilter.h | 4 +-
.../include/itkMaskFeaturePointSelectionFilter.hxx | 2 +-
.../include/itkSimpleContourExtractorImageFilter.h | 4 +-
.../include/itkSobelEdgeDetectionImageFilter.h | 2 +-
.../include/itkUnsharpMaskImageFilter.h | 2 +-
.../itkZeroCrossingBasedEdgeDetectionImageFilter.h | 2 +-
.../include/itkZeroCrossingImageFilter.h | 2 +-
.../test/itkHoughTransform2DCirclesImageTest.cxx | 265 ++-
.../test/itkHoughTransform2DLinesImageTest.cxx | 94 +-
.../include/itkBinaryFunctorImageFilter.h | 2 +-
.../ImageFilterBase/include/itkBoxImageFilter.h | 2 +-
.../ImageFilterBase/include/itkCastImageFilter.h | 16 +-
.../ImageFilterBase/include/itkCastImageFilter.hxx | 32 +
.../ImageFilterBase/include/itkKernelImageFilter.h | 2 +-
.../itkMaskNeighborhoodOperatorImageFilter.h | 2 +-
.../include/itkMovingHistogramImageFilter.h | 2 +-
.../include/itkMovingHistogramImageFilterBase.h | 2 +-
.../include/itkNeighborhoodOperatorImageFilter.h | 2 +-
.../ImageFilterBase/include/itkNoiseImageFilter.h | 2 +-
.../include/itkNullImageToImageFilterDriver.hxx | 4 +-
.../include/itkRecursiveSeparableImageFilter.h | 2 +-
.../include/itkTernaryFunctorImageFilter.h | 2 +-
.../include/itkVectorCastImageFilter.h | 2 +-
.../itkVectorNeighborhoodOperatorImageFilter.h | 2 +-
.../include/itkLabelMapContourOverlayImageFilter.h | 2 +-
.../include/itkLabelMapOverlayImageFilter.h | 2 +-
.../include/itkLabelMapToRGBImageFilter.h | 2 +-
.../include/itkLabelOverlayImageFilter.h | 2 +-
.../ImageFusion/include/itkLabelToRGBImageFilter.h | 2 +-
.../itkDifferenceOfGaussiansGradientImageFilter.h | 2 +-
.../ImageGradient/include/itkGradientImageFilter.h | 4 +-
.../include/itkGradientMagnitudeImageFilter.h | 2 +-
...GradientMagnitudeRecursiveGaussianImageFilter.h | 2 +-
.../itkGradientRecursiveGaussianImageFilter.h | 4 +-
.../itkVectorGradientMagnitudeImageFilter.h | 2 +-
.../itkBSplineCenteredL2ResampleImageFilterBase.h | 2 +-
.../itkBSplineCenteredResampleImageFilterBase.h | 2 +-
.../include/itkBSplineControlPointImageFilter.h | 2 +-
.../include/itkBSplineControlPointImageFunction.h | 2 +-
.../include/itkBSplineDownsampleImageFilter.h | 2 +-
.../include/itkBSplineL2ResampleImageFilterBase.h | 2 +-
.../include/itkBSplineResampleImageFilterBase.h | 2 +-
.../include/itkBSplineResampleImageFilterBase.hxx | 4 +-
.../itkBSplineScatteredDataPointSetToImageFilter.h | 2 +-
.../include/itkBSplineUpsampleImageFilter.h | 2 +-
.../ImageGrid/include/itkBinShrinkImageFilter.hxx | 18 +-
.../ImageGrid/include/itkConstantPadImageFilter.h | 2 +-
.../include/itkCoxDeBoorBSplineKernelFunction.h | 2 +-
.../ImageGrid/include/itkCropImageFilter.h | 2 +-
.../ImageGrid/include/itkCyclicShiftImageFilter.h | 2 +-
.../ImageGrid/include/itkExpandImageFilter.h | 2 +-
.../ImageGrid/include/itkExpandImageFilter.hxx | 23 +-
.../ImageGrid/include/itkFlipImageFilter.h | 4 +-
.../ImageGrid/include/itkInterpolateImageFilter.h | 2 +-
.../ImageGrid/include/itkMirrorPadImageFilter.h | 2 +-
.../ImageGrid/include/itkOrientImageFilter.h | 2 +-
.../ImageGrid/include/itkPadImageFilter.h | 2 +-
.../ImageGrid/include/itkPadImageFilterBase.h | 2 +-
.../ImageGrid/include/itkPasteImageFilter.h | 2 +-
.../ImageGrid/include/itkPermuteAxesImageFilter.h | 2 +-
.../include/itkRegionOfInterestImageFilter.h | 2 +-
.../ImageGrid/include/itkResampleImageFilter.h | 3 +-
.../ImageGrid/include/itkShrinkImageFilter.h | 2 +-
.../ImageGrid/include/itkShrinkImageFilter.hxx | 21 +-
.../ImageGrid/include/itkSliceBySliceImageFilter.h | 4 +-
.../include/itkSliceBySliceImageFilter.hxx | 39 +-
.../ImageGrid/include/itkSliceImageFilter.h | 166 ++
.../ImageGrid/include/itkSliceImageFilter.hxx | 346 ++++
.../include/itkVectorResampleImageFilter.h | 2 +-
.../ImageGrid/include/itkWarpImageFilter.h | 8 +-
.../ImageGrid/include/itkWarpImageFilter.hxx | 57 +-
.../ImageGrid/include/itkWarpVectorImageFilter.h | 2 +-
.../ImageGrid/include/itkWrapPadImageFilter.h | 2 +-
.../include/itkZeroFluxNeumannPadImageFilter.h | 2 +-
.../test/Baseline/ResampleImageTest5.png.md5 | 2 +-
.../test/Baseline/ResampleImageTest5.png.sha512 | 2 +-
.../test/Baseline/ResampleImageTest6.png.md5 | 2 +-
.../test/Baseline/ResampleImageTest6.png.sha512 | 2 +-
Modules/Filtering/ImageGrid/test/CMakeLists.txt | 4 +
.../test/itkBinShrinkImageFilterTest1.cxx | 10 +-
.../test/itkSliceBySliceImageFilterTest.cxx | 11 +-
.../ImageGrid/test/itkSliceImageFilterTest.cxx | 370 +++++
.../wrapping/itkRegionOfInterestImageFilter.wrap | 7 +
.../ImageIntensity/include/itkAbsImageFilter.h | 2 +-
.../ImageIntensity/include/itkAcosImageFilter.h | 2 +-
.../ImageIntensity/include/itkAdaptImageFilter.h | 2 +-
.../ImageIntensity/include/itkAddImageFilter.h | 31 +-
.../ImageIntensity/include/itkAndImageFilter.h | 31 +-
.../include/itkArithmeticOpsFunctors.h | 392 +++++
.../ImageIntensity/include/itkAsinImageFilter.h | 2 +-
.../ImageIntensity/include/itkAtan2ImageFilter.h | 2 +-
.../ImageIntensity/include/itkAtanImageFilter.h | 2 +-
.../include/itkBinaryMagnitudeImageFilter.h | 2 +-
.../ImageIntensity/include/itkBitwiseOpsFunctors.h | 139 ++
.../include/itkBoundedReciprocalImageFilter.h | 2 +-
.../ImageIntensity/include/itkClampImageFilter.h | 2 +-
.../include/itkComplexToImaginaryImageFilter.h | 2 +-
.../include/itkComplexToModulusImageFilter.h | 2 +-
.../include/itkComplexToPhaseImageFilter.h | 2 +-
.../include/itkComplexToRealImageFilter.h | 2 +-
.../itkConstrainedValueAdditionImageFilter.h | 2 +-
.../itkConstrainedValueDifferenceImageFilter.h | 2 +-
.../ImageIntensity/include/itkCosImageFilter.h | 2 +-
.../ImageIntensity/include/itkDivideImageFilter.h | 38 +-
.../include/itkDivideOrZeroOutImageFilter.h | 42 +-
.../include/itkEdgePotentialImageFilter.h | 2 +-
.../ImageIntensity/include/itkExpImageFilter.h | 2 +-
.../include/itkExpNegativeImageFilter.h | 2 +-
.../include/itkHistogramMatchingImageFilter.h | 2 +-
.../include/itkIntensityWindowingImageFilter.h | 4 +-
.../include/itkInvertIntensityImageFilter.h | 2 +-
.../ImageIntensity/include/itkLog10ImageFilter.h | 2 +-
.../ImageIntensity/include/itkLogImageFilter.h | 2 +-
.../ImageIntensity/include/itkLogicOpsFunctors.h | 102 +-
.../itkMagnitudeAndPhaseToComplexImageFilter.h | 2 +-
.../ImageIntensity/include/itkMaskImageFilter.h | 2 +-
.../include/itkMaskNegatedImageFilter.h | 2 +-
.../include/itkMatrixIndexSelectionImageFilter.h | 2 +-
.../ImageIntensity/include/itkMaximumImageFilter.h | 2 +-
.../ImageIntensity/include/itkMinimumImageFilter.h | 2 +-
.../ImageIntensity/include/itkModulusImageFilter.h | 83 +-
.../include/itkMultiplyImageFilter.h | 30 +-
.../ImageIntensity/include/itkNaryAddImageFilter.h | 2 +-
.../include/itkNaryFunctorImageFilter.h | 2 +-
.../include/itkNaryMaximumImageFilter.h | 2 +-
.../include/itkNormalizeToConstantImageFilter.h | 2 +-
.../ImageIntensity/include/itkNotImageFilter.h | 82 +-
.../ImageIntensity/include/itkOrImageFilter.h | 32 +-
.../include/itkPolylineMask2DImageFilter.h | 2 +-
.../include/itkPolylineMaskImageFilter.h | 2 +-
.../include/itkRGBToLuminanceImageFilter.h | 2 +-
.../include/itkRescaleIntensityImageFilter.h | 4 +-
.../ImageIntensity/include/itkRoundImageFilter.h | 2 +-
.../include/itkShiftScaleImageFilter.h | 4 +-
.../ImageIntensity/include/itkSigmoidImageFilter.h | 4 +-
.../ImageIntensity/include/itkSinImageFilter.h | 2 +-
.../ImageIntensity/include/itkSqrtImageFilter.h | 2 +-
.../ImageIntensity/include/itkSquareImageFilter.h | 2 +-
.../include/itkSubtractImageFilter.h | 30 +-
.../include/itkSymmetricEigenAnalysisImageFilter.h | 2 +-
.../ImageIntensity/include/itkTanImageFilter.h | 2 +-
.../include/itkTernaryAddImageFilter.h | 29 +-
.../include/itkTernaryMagnitudeImageFilter.h | 2 +-
.../itkTernaryMagnitudeSquaredImageFilter.h | 2 +-
.../include/itkTernaryOperatorImageFilter.h | 40 +-
.../include/itkVectorExpandImageFilter.h | 2 +-
.../itkVectorIndexSelectionCastImageFilter.h | 2 +-
.../include/itkVectorMagnitudeImageFilter.h | 2 +-
.../include/itkVectorRescaleIntensityImageFilter.h | 4 +-
.../include/itkWeightedAddImageFilter.h | 2 +-
.../ImageIntensity/include/itkXorImageFilter.h | 32 +-
Modules/Filtering/ImageIntensity/itk-module.cmake | 1 +
.../Filtering/ImageIntensity/test/CMakeLists.txt | 16 +
.../test/itkArithmeticOpsFunctorsTest.cxx | 91 +
.../test/itkBitwiseOpsFunctorsTest.cxx | 39 +
.../Filtering/ImageIntensity/test/itkEqualTest.cxx | 4 +
.../ImageIntensity/test/itkNotImageFilterTest.cxx | 10 +-
.../include/itkBinaryContourImageFilter.h | 2 +-
.../ImageLabel/include/itkChangeLabelImageFilter.h | 2 +-
.../include/itkLabelContourImageFilter.h | 2 +-
.../include/itkAdditiveGaussianNoiseImageFilter.h | 3 +-
.../itkAdditiveGaussianNoiseImageFilter.hxx | 2 +-
.../ImageNoise/include/itkNoiseBaseImageFilter.h | 2 +-
.../include/itkSaltAndPepperNoiseImageFilter.h | 3 +-
.../ImageNoise/include/itkShotNoiseImageFilter.h | 3 +-
.../ImageNoise/include/itkShotNoiseImageFilter.hxx | 2 +-
.../include/itkSpeckleNoiseImageFilter.h | 3 +-
.../test/itkPeakSignalToNoiseRatioCalculator.h | 3 +-
.../ImageSources/include/itkGaborKernelFunction.h | 2 +-
.../include/itkGenerateImageSource.hxx | 3 +-
.../include/itkParametricImageSource.h | 2 +-
.../include/itkPhysicalPointImageSource.h | 2 +-
.../include/itkAccumulateImageFilter.h | 2 +-
.../itkAdaptiveHistogramEqualizationImageFilter.h | 2 +-
.../include/itkBinaryProjectionImageFilter.h | 2 +-
.../include/itkGetAverageSliceImageFilter.h | 2 +-
.../include/itkHistogramAlgorithmBase.h | 2 +-
.../include/itkImageMomentsCalculator.h | 2 +-
.../include/itkImagePCADecompositionCalculator.h | 2 +-
.../include/itkImagePCAShapeModelEstimator.h | 2 +-
.../include/itkImageShapeModelEstimatorBase.h | 2 +-
.../include/itkLabelOverlapMeasuresImageFilter.h | 2 +-
.../include/itkLabelStatisticsImageFilter.h | 6 +-
.../include/itkMaximumProjectionImageFilter.h | 2 +-
.../include/itkMeanProjectionImageFilter.h | 2 +-
.../include/itkMedianProjectionImageFilter.h | 2 +-
.../include/itkMinimumMaximumImageFilter.h | 2 +-
.../include/itkMinimumProjectionImageFilter.h | 2 +-
.../include/itkProjectionImageFilter.h | 2 +-
.../include/itkProjectionImageFilter.hxx | 2 +-
.../itkStandardDeviationProjectionImageFilter.h | 2 +-
.../include/itkStatisticsImageFilter.h | 2 +-
.../include/itkSumProjectionImageFilter.h | 2 +-
.../test/itkMaximumProjectionImageFilterTest2.cxx | 3 +
.../LabelMap/include/itkAggregateLabelMapFilter.h | 2 +-
.../itkAttributeKeepNObjectsLabelMapFilter.h | 2 +-
.../include/itkAttributeOpeningLabelMapFilter.h | 2 +-
.../include/itkAttributePositionLabelMapFilter.h | 2 +-
.../include/itkAttributeRelabelLabelMapFilter.h | 2 +-
.../include/itkAttributeSelectionLabelMapFilter.h | 2 +-
.../include/itkAttributeUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkAutoCropLabelMapFilter.h | 2 +-
.../include/itkBinaryFillholeImageFilter.h | 2 +-
.../include/itkBinaryGrindPeakImageFilter.h | 2 +-
.../include/itkBinaryImageToLabelMapFilter.h | 2 +-
.../include/itkBinaryImageToLabelMapFilter.hxx | 6 +-
.../include/itkBinaryImageToShapeLabelMapFilter.h | 2 +-
.../itkBinaryImageToStatisticsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkBinaryNotImageFilter.h | 2 +-
.../itkBinaryReconstructionByDilationImageFilter.h | 2 +-
.../itkBinaryReconstructionByErosionImageFilter.h | 2 +-
.../itkBinaryReconstructionLabelMapFilter.h | 2 +-
.../itkBinaryShapeKeepNObjectsImageFilter.h | 2 +-
.../include/itkBinaryShapeOpeningImageFilter.h | 2 +-
.../itkBinaryStatisticsKeepNObjectsImageFilter.h | 2 +-
.../itkBinaryStatisticsOpeningImageFilter.h | 2 +-
.../include/itkChangeLabelLabelMapFilter.h | 9 +-
.../include/itkChangeRegionLabelMapFilter.h | 2 +-
.../LabelMap/include/itkConvertLabelMapFilter.h | 2 +-
.../LabelMap/include/itkCropLabelMapFilter.h | 2 +-
.../LabelMap/include/itkInPlaceLabelMapFilter.h | 2 +-
.../include/itkLabelImageToLabelMapFilter.h | 2 +-
.../include/itkLabelImageToShapeLabelMapFilter.h | 2 +-
.../itkLabelImageToStatisticsLabelMapFilter.h | 2 +-
Modules/Filtering/LabelMap/include/itkLabelMap.h | 2 +-
.../Filtering/LabelMap/include/itkLabelMapFilter.h | 2 +-
.../LabelMap/include/itkLabelMapMaskImageFilter.h | 2 +-
.../include/itkLabelMapToAttributeImageFilter.h | 2 +-
.../include/itkLabelMapToBinaryImageFilter.h | 2 +-
.../include/itkLabelMapToLabelImageFilter.h | 2 +-
.../include/itkLabelSelectionLabelMapFilter.h | 2 +-
.../include/itkLabelShapeKeepNObjectsImageFilter.h | 2 +-
.../include/itkLabelShapeOpeningImageFilter.h | 2 +-
.../itkLabelStatisticsKeepNObjectsImageFilter.h | 2 +-
.../include/itkLabelStatisticsOpeningImageFilter.h | 2 +-
.../include/itkLabelUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkMergeLabelMapFilter.h | 2 +-
.../include/itkObjectByObjectLabelMapFilter.h | 2 +-
.../LabelMap/include/itkPadLabelMapFilter.h | 2 +-
.../include/itkRegionFromReferenceLabelMapFilter.h | 2 +-
.../LabelMap/include/itkRelabelLabelMapFilter.h | 2 +-
.../include/itkShapeKeepNObjectsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeLabelMapFilter.hxx | 73 +-
.../LabelMap/include/itkShapeLabelObject.h | 10 +-
.../include/itkShapeOpeningLabelMapFilter.h | 2 +-
.../include/itkShapePositionLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShapeRelabelImageFilter.h | 2 +-
.../include/itkShapeRelabelLabelMapFilter.h | 2 +-
.../include/itkShapeUniqueLabelMapFilter.h | 2 +-
.../LabelMap/include/itkShiftScaleLabelMapFilter.h | 2 +-
.../itkStatisticsKeepNObjectsLabelMapFilter.h | 2 +-
.../LabelMap/include/itkStatisticsLabelMapFilter.h | 2 +-
.../include/itkStatisticsOpeningLabelMapFilter.h | 2 +-
.../include/itkStatisticsPositionLabelMapFilter.h | 2 +-
.../include/itkStatisticsRelabelImageFilter.h | 2 +-
.../include/itkStatisticsRelabelLabelMapFilter.h | 2 +-
.../include/itkStatisticsUniqueLabelMapFilter.h | 2 +-
Modules/Filtering/LabelMap/itk-module.cmake | 1 +
Modules/Filtering/LabelMap/test/CMakeLists.txt | 9 +-
.../test/itkBinaryImageToLabelMapFilterTest2.cxx | 3 +
.../itkLabelImageToShapeLabelMapFilterTest2.cxx | 162 --
.../LabelMap/test/itkShapeLabelMapFilterGTest.cxx | 453 +++++
.../test/itkShapeLabelObjectAccessorsTest1.cxx | 18 +
.../include/itkAnchorCloseImageFilter.h | 2 +-
.../include/itkAnchorDilateImageFilter.h | 2 +-
.../include/itkAnchorErodeDilateImageFilter.h | 2 +-
.../include/itkAnchorErodeImageFilter.h | 2 +-
.../include/itkAnchorOpenCloseImageFilter.h | 2 +-
.../include/itkAnchorOpenImageFilter.h | 2 +-
.../include/itkBasicDilateImageFilter.h | 2 +-
.../include/itkBasicErodeImageFilter.h | 2 +-
.../include/itkBlackTopHatImageFilter.h | 2 +-
.../itkClosingByReconstructionImageFilter.h | 2 +-
.../include/itkDoubleThresholdImageFilter.h | 2 +-
.../include/itkFlatStructuringElement.h | 2 +-
.../itkGrayscaleConnectedClosingImageFilter.h | 2 +-
.../itkGrayscaleConnectedOpeningImageFilter.h | 2 +-
.../include/itkGrayscaleDilateImageFilter.h | 2 +-
.../include/itkGrayscaleErodeImageFilter.h | 2 +-
.../include/itkGrayscaleFillholeImageFilter.h | 2 +-
.../itkGrayscaleFunctionDilateImageFilter.h | 2 +-
.../include/itkGrayscaleFunctionErodeImageFilter.h | 2 +-
.../itkGrayscaleGeodesicDilateImageFilter.h | 2 +-
.../include/itkGrayscaleGeodesicErodeImageFilter.h | 2 +-
.../include/itkGrayscaleGrindPeakImageFilter.h | 2 +-
.../itkGrayscaleMorphologicalClosingImageFilter.h | 2 +-
.../itkGrayscaleMorphologicalOpeningImageFilter.h | 2 +-
.../include/itkHConcaveImageFilter.h | 2 +-
.../include/itkHConvexImageFilter.h | 2 +-
.../include/itkHMaximaImageFilter.h | 2 +-
.../include/itkHMinimaImageFilter.h | 2 +-
.../include/itkMaskedMovingHistogramImageFilter.h | 181 ++
.../itkMaskedMovingHistogramImageFilter.hxx | 0
.../include/itkMaskedRankImageFilter.h | 140 ++
.../include/itkMaskedRankImageFilter.hxx | 0
.../include/itkMorphologicalGradientImageFilter.h | 2 +-
.../include/itkMorphologyImageFilter.h | 2 +-
.../include/itkMovingHistogramDilateImageFilter.h | 2 +-
.../include/itkMovingHistogramErodeImageFilter.h | 2 +-
...vingHistogramMorphologicalGradientImageFilter.h | 2 +-
.../itkMovingHistogramMorphologyImageFilter.h | 2 +-
.../itkOpeningByReconstructionImageFilter.h | 2 +-
.../include/itkRankHistogram.h | 402 +++++
.../include/itkRankImageFilter.h | 143 ++
.../include/itkRankImageFilter.hxx | 0
.../itkReconstructionByDilationImageFilter.h | 2 +-
.../itkReconstructionByErosionImageFilter.h | 2 +-
.../include/itkReconstructionImageFilter.h | 2 +-
.../include/itkRegionalMaximaImageFilter.h | 2 +-
.../include/itkRegionalMinimaImageFilter.h | 2 +-
.../include/itkValuedRegionalExtremaImageFilter.h | 4 +-
.../include/itkValuedRegionalMaximaImageFilter.h | 2 +-
.../include/itkValuedRegionalMinimaImageFilter.h | 2 +-
.../include/itkVanHerkGilWermanDilateImageFilter.h | 2 +-
.../itkVanHerkGilWermanErodeDilateImageFilter.h | 2 +-
.../include/itkVanHerkGilWermanErodeImageFilter.h | 2 +-
.../include/itkWhiteTopHatImageFilter.h | 2 +-
...gByReconstructionImageFilterTestNoInput.png.md5 | 2 +-
...ReconstructionImageFilterTestNoInput.png.sha512 | 2 +-
...ByReconstructionImageFilterTestNoInput2.png.md5 | 2 +-
...econstructionImageFilterTestNoInput2.png.sha512 | 2 +-
.../cthead1RegionalMaximal-ref1.png.sha512 | 1 +
.../cthead1RegionalMaximal-ref2.png.sha512 | 1 +
.../cthead1RegionalMaximal-ref2_1.png.sha512 | 1 -
.../cthead1RegionalMaximal-ref2_2.png.sha512 | 1 -
.../cthead1RegionalMinimal-ref1.png.sha512 | 1 +
.../cthead1RegionalMinimal-ref2.png.sha512 | 1 +
.../cthead1RegionalMinimal-ref2_1.png.sha512 | 1 -
.../cthead1RegionalMinimal-ref2_2.png.sha512 | 1 -
.../Baseline}/itkMaskedRankImageFilter10.png.md5 | 0
.../itkMaskedRankImageFilter10.png.sha512 | 0
.../Baseline}/itkMaskedRankImageFilter3.png.md5 | 0
.../Baseline}/itkMaskedRankImageFilter3.png.sha512 | 0
.../test/Baseline}/itkRankImageFilter10.png.md5 | 0
.../test/Baseline}/itkRankImageFilter10.png.sha512 | 0
.../test/Baseline}/itkRankImageFilter3.png.md5 | 0
.../test/Baseline}/itkRankImageFilter3.png.sha512 | 0
.../MathematicalMorphology/test/CMakeLists.txt | 44 +
.../test/itkMapMaskedRankImageFilterTest.cxx | 0
.../test/itkMapRankImageFilterTest.cxx | 0
.../test/itkMaskedRankImageFilterTest.cxx | 0
.../test/itkRankImageFilterTest.cxx | 0
Modules/Filtering/Path/include/itkChainCodePath.h | 2 +-
.../Filtering/Path/include/itkChainCodePath2D.h | 2 +-
.../itkChainCodeToFourierSeriesPathFilter.h | 2 +-
.../itkExtractOrthogonalSwath2DImageFilter.h | 2 +-
.../Filtering/Path/include/itkFourierSeriesPath.h | 2 +-
Modules/Filtering/Path/include/itkHilbertPath.h | 2 +-
.../Path/include/itkImageAndPathToImageFilter.h | 2 +-
.../Path/include/itkOrthogonalSwath2DPathFilter.h | 2 +-
.../itkOrthogonallyCorrected2DParametricPath.h | 2 +-
Modules/Filtering/Path/include/itkParametricPath.h | 2 +-
Modules/Filtering/Path/include/itkPath.h | 2 +-
.../Path/include/itkPathAndImageToPathFilter.h | 2 +-
Modules/Filtering/Path/include/itkPathIterator.h | 2 +-
Modules/Filtering/Path/include/itkPathSource.h | 2 +-
.../Path/include/itkPathToChainCodePathFilter.h | 2 +-
.../Filtering/Path/include/itkPathToImageFilter.h | 2 +-
.../Filtering/Path/include/itkPathToPathFilter.h | 2 +-
.../Path/include/itkPolyLineParametricPath.h | 2 +-
.../include/itkBorderQuadEdgeMeshFilter.h | 2 +-
.../include/itkCleanQuadEdgeMeshFilter.h | 2 +-
.../include/itkDecimationQuadEdgeMeshFilter.h | 2 +-
.../itkDelaunayConformingQuadEdgeMeshFilter.h | 2 +-
.../itkDiscreteCurvatureQuadEdgeMeshFilter.h | 2 +-
...tkDiscreteGaussianCurvatureQuadEdgeMeshFilter.h | 2 +-
...itkDiscreteMaximumCurvatureQuadEdgeMeshFilter.h | 2 +-
.../itkDiscreteMeanCurvatureQuadEdgeMeshFilter.h | 2 +-
...itkDiscreteMinimumCurvatureQuadEdgeMeshFilter.h | 2 +-
...DiscretePrincipalCurvaturesQuadEdgeMeshFilter.h | 2 +-
.../include/itkEdgeDecimationQuadEdgeMeshFilter.h | 2 +-
.../itkLaplacianDeformationQuadEdgeMeshFilter.h | 2 +-
...ormationQuadEdgeMeshFilterWithHardConstraints.h | 2 +-
...ormationQuadEdgeMeshFilterWithSoftConstraints.h | 2 +-
.../include/itkNormalQuadEdgeMeshFilter.h | 2 +-
.../itkParameterizationQuadEdgeMeshFilter.h | 2 +-
.../include/itkQuadEdgeMeshDecimationCriteria.h | 6 +-
.../itkQuadricDecimationQuadEdgeMeshFilter.h | 2 +-
.../include/itkSmoothingQuadEdgeMeshFilter.h | 2 +-
...SquaredEdgeLengthDecimationQuadEdgeMeshFilter.h | 2 +-
.../Smoothing/include/itkBinomialBlurImageFilter.h | 2 +-
.../Smoothing/include/itkBoxMeanImageFilter.h | 2 +-
.../Smoothing/include/itkBoxSigmaImageFilter.h | 2 +-
.../include/itkDiscreteGaussianImageFilter.h | 2 +-
.../Smoothing/include/itkMeanImageFilter.h | 2 +-
.../Smoothing/include/itkMedianImageFilter.h | 2 +-
.../include/itkRecursiveGaussianImageFilter.h | 2 +-
.../itkSmoothingRecursiveGaussianImageFilter.h | 81 +-
.../itkSmoothingRecursiveGaussianImageFilter.hxx | 36 +-
Modules/Filtering/Smoothing/test/CMakeLists.txt | 7 +-
...tkSmoothingRecursiveGaussianImageFilterTest.cxx | 274 +--
.../itkSpatialFunctionImageEvaluatorFilter.h | 2 +-
.../include/itkBinaryThresholdImageFilter.h | 2 +-
.../itkBinaryThresholdProjectionImageFilter.h | 2 +-
.../include/itkHistogramThresholdCalculator.h | 2 +-
.../include/itkHistogramThresholdImageFilter.h | 17 +-
.../include/itkHistogramThresholdImageFilter.hxx | 7 +-
.../include/itkHuangThresholdCalculator.h | 2 +-
.../include/itkHuangThresholdImageFilter.h | 2 +-
.../include/itkIntermodesThresholdCalculator.h | 2 +-
.../include/itkIntermodesThresholdImageFilter.h | 2 +-
.../include/itkIsoDataThresholdCalculator.h | 2 +-
.../include/itkIsoDataThresholdImageFilter.h | 2 +-
.../itkKappaSigmaThresholdImageCalculator.h | 2 +-
.../include/itkKappaSigmaThresholdImageFilter.h | 2 +-
.../itkKittlerIllingworthThresholdCalculator.h | 2 +-
.../itkKittlerIllingworthThresholdImageFilter.h | 2 +-
.../include/itkLiThresholdCalculator.h | 2 +-
.../include/itkLiThresholdImageFilter.h | 2 +-
.../include/itkMaximumEntropyThresholdCalculator.h | 2 +-
.../itkMaximumEntropyThresholdImageFilter.h | 2 +-
.../include/itkMomentsThresholdCalculator.h | 2 +-
.../include/itkMomentsThresholdImageFilter.h | 2 +-
.../include/itkOtsuMultipleThresholdsCalculator.h | 2 +-
.../include/itkOtsuMultipleThresholdsImageFilter.h | 2 +-
.../include/itkOtsuThresholdCalculator.h | 2 +-
.../include/itkOtsuThresholdImageFilter.h | 2 +-
.../include/itkRenyiEntropyThresholdCalculator.h | 2 +-
.../include/itkRenyiEntropyThresholdImageFilter.h | 2 +-
.../include/itkShanbhagThresholdCalculator.h | 2 +-
.../include/itkShanbhagThresholdImageFilter.h | 2 +-
.../Thresholding/include/itkThresholdImageFilter.h | 2 +-
.../include/itkThresholdLabelerImageFilter.h | 2 +-
.../include/itkTriangleThresholdCalculator.h | 2 +-
.../include/itkTriangleThresholdImageFilter.h | 2 +-
.../include/itkYenThresholdCalculator.h | 2 +-
.../include/itkYenThresholdImageFilter.h | 2 +-
.../itkHuangThresholdImageFilterTestShort.png.md5 | 2 +-
...tkHuangThresholdImageFilterTestShort.png.sha512 | 2 +-
...IntermodesThresholdImageFilterTestShort.png.md5 | 2 +-
...ermodesThresholdImageFilterTestShort.png.sha512 | 2 +-
...itkIsoDataThresholdImageFilterTestShort.png.md5 | 2 +-
...IsoDataThresholdImageFilterTestShort.png.sha512 | 2 +-
...llingworthThresholdImageFilterTestShort.png.md5 | 2 +-
...ngworthThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkLiThresholdImageFilterTestShort.png.md5 | 2 +-
.../itkLiThresholdImageFilterTestShort.png.sha512 | 2 +-
...mumEntropyThresholdImageFilterTestShort.png.md5 | 2 +-
...EntropyThresholdImageFilterTestShort.png.sha512 | 2 +-
...itkMomentsThresholdImageFilterTestShort.png.md5 | 2 +-
...MomentsThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkOtsuThresholdImageFilterTestShort.png.md5 | 2 +-
...itkOtsuThresholdImageFilterTestShort.png.sha512 | 2 +-
...nyiEntropyThresholdImageFilterTestShort.png.md5 | 2 +-
...EntropyThresholdImageFilterTestShort.png.sha512 | 2 +-
...tkShanbhagThresholdImageFilterTestShort.png.md5 | 2 +-
...hanbhagThresholdImageFilterTestShort.png.sha512 | 2 +-
...tkTriangleThresholdImageFilterTestShort.png.md5 | 2 +-
...riangleThresholdImageFilterTestShort.png.sha512 | 2 +-
.../itkYenThresholdImageFilterTestShort.png.md5 | 2 +-
.../itkYenThresholdImageFilterTestShort.png.sha512 | 2 +-
Modules/IO/BMP/include/itkBMPImageIO.h | 2 +-
Modules/IO/BMP/include/itkBMPImageIOFactory.h | 2 +-
Modules/IO/BMP/itk-module.cmake | 2 +
Modules/IO/BioRad/include/itkBioRadImageIO.h | 2 +-
.../IO/BioRad/include/itkBioRadImageIOFactory.h | 2 +-
Modules/IO/BioRad/itk-module.cmake | 2 +
Modules/IO/Bruker/CMakeLists.txt | 3 +
Modules/IO/Bruker/include/itkBruker2dseqImageIO.h | 139 ++
.../Bruker/include/itkBruker2dseqImageIOFactory.h | 76 +
Modules/IO/Bruker/itk-module.cmake | 12 +
Modules/IO/Bruker/src/CMakeLists.txt | 6 +
Modules/IO/Bruker/src/itkBruker2dseqImageIO.cxx | 930 +++++++++++
.../IO/Bruker/src/itkBruker2dseqImageIOFactory.cxx | 71 +
.../Bruker/test/Baseline/PV5.1_FSE_INT16.mha.md5 | 1 +
.../test/Baseline/PV5.1_FSE_INT16.mha.sha512 | 1 +
.../test/Baseline/PV6.0_FLASH_FLOAT32.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_FLOAT32.mha.sha512 | 1 +
.../Bruker/test/Baseline/PV6.0_FLASH_INT16.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_INT16.mha.sha512 | 1 +
.../Bruker/test/Baseline/PV6.0_FLASH_UINT8.mha.md5 | 1 +
.../test/Baseline/PV6.0_FLASH_UINT8.mha.sha512 | 1 +
Modules/IO/Bruker/test/CMakeLists.txt | 46 +
.../IO/Bruker/test/Input/PV5.1_FSE/.DS_Store.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/.DS_Store.sha512 | 1 +
.../test/Input/PV5.1_FSE/pdata/.DS_Store.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/.DS_Store.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/2dseq.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/d3proc.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/d3proc.sha512 | 1 +
.../IO/Bruker/test/Input/PV5.1_FSE/pdata/1/id.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/id.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/meta.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/meta.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/procs.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/procs.sha512 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/reco.md5 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/reco.sha512 | 1 +
.../IO/Bruker/test/Input/PV5.1_FSE/pdata/1/roi.md5 | 1 +
.../Bruker/test/Input/PV5.1_FSE/pdata/1/roi.sha512 | 1 +
.../test/Input/PV5.1_FSE/pdata/1/visu_pars.md5 | 1 +
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.../test/Input/PV6.0_FLASH/AdjStatePerScan.md5 | 1 +
.../test/Input/PV6.0_FLASH/AdjStatePerScan.sha512 | 1 +
Modules/IO/Bruker/test/Input/PV6.0_FLASH/acqp.md5 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/acqp.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/configscan.md5 | 1 +
.../test/Input/PV6.0_FLASH/configscan.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/method.md5 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/method.sha512 | 1 +
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.../test/Input/PV6.0_FLASH/pdata/1/id.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/methreco.md5 | 1 +
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.../Bruker/test/Input/PV6.0_FLASH/pdata/1/reco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/reco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/1/visu_pars.md5 | 1 +
.../Input/PV6.0_FLASH/pdata/1/visu_pars.sha512 | 1 +
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.../Bruker/test/Input/PV6.0_FLASH/pdata/2/id.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/id.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/methreco.md5 | 1 +
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.../Bruker/test/Input/PV6.0_FLASH/pdata/2/reco.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/2/reco.sha512 | 1 +
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.../Input/PV6.0_FLASH/pdata/2/visu_pars.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/2dseq.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/2dseq.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/pdata/3/id.md5 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/id.sha512 | 1 +
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.../test/Input/PV6.0_FLASH/pdata/3/reco.sha512 | 1 +
.../test/Input/PV6.0_FLASH/pdata/3/visu_pars.md5 | 1 +
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.../Bruker/test/Input/PV6.0_FLASH/pulseprogram.md5 | 1 +
.../test/Input/PV6.0_FLASH/pulseprogram.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/specpar.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/specpar.sha512 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/uxnmr.info.md5 | 1 +
.../test/Input/PV6.0_FLASH/uxnmr.info.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/uxnmr.par.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/uxnmr.par.sha512 | 1 +
.../IO/Bruker/test/Input/PV6.0_FLASH/visu_pars.md5 | 1 +
.../Bruker/test/Input/PV6.0_FLASH/visu_pars.sha512 | 1 +
Modules/IO/Bruker/test/itkBrukerImageTest.cxx | 75 +
Modules/IO/Bruker/wrapping/CMakeLists.txt | 3 +
.../IO/Bruker/wrapping/itkBruker2dseqImageIO.wrap | 2 +
Modules/IO/CSV/include/itkCSVArray2DDataObject.h | 2 +-
Modules/IO/CSV/include/itkCSVArray2DFileReader.h | 2 +-
Modules/IO/CSV/include/itkCSVFileReaderBase.h | 2 +-
.../IO/CSV/include/itkCSVNumericObjectFileWriter.h | 2 +-
Modules/IO/DCMTK/include/itkDCMTKImageIO.h | 22 +
Modules/IO/DCMTK/itk-module.cmake | 2 +
Modules/IO/DCMTK/src/itkDCMTKFileReader.cxx | 85 +-
Modules/IO/DCMTK/src/itkDCMTKImageIO.cxx | 81 +-
Modules/IO/DCMTK/test/CMakeLists.txt | 22 +-
Modules/IO/DCMTK/test/itkDCMTKRGBImageIOTest.cxx | 81 +
.../IO/DCMTK/test/itkDCMTKSeriesReadImageWrite.cxx | 2 +-
Modules/IO/GDCM/include/itkGDCMImageIO.h | 2 +-
Modules/IO/GDCM/include/itkGDCMImageIOFactory.h | 2 +-
Modules/IO/GDCM/include/itkGDCMSeriesFileNames.h | 2 +-
Modules/IO/GDCM/itk-module.cmake | 2 +
.../Baseline/itkGDCMImageIOTest2Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest2Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest2RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest2RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTest3Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest3Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest3RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest3RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTest4Baseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest4Baseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTest4RescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTest4RescaledBaseline.mha.sha512 | 2 +-
.../Baseline/itkGDCMImageIOTestBaseline.mha.md5 | 2 +-
.../Baseline/itkGDCMImageIOTestBaseline.mha.sha512 | 2 +-
.../itkGDCMImageIOTestRescaledBaseline.mha.md5 | 2 +-
.../itkGDCMImageIOTestRescaledBaseline.mha.sha512 | 2 +-
Modules/IO/GE/include/Ge4xHdr.h | 326 ----
Modules/IO/GE/include/Ge5xHdr.h | 855 ----------
Modules/IO/GE/include/itkGE4ImageIO.h | 2 +-
Modules/IO/GE/include/itkGE4ImageIOFactory.h | 2 +-
Modules/IO/GE/include/itkGE5ImageIO.h | 5 +-
Modules/IO/GE/include/itkGE5ImageIOFactory.h | 2 +-
Modules/IO/GE/include/itkGEAdwImageIO.h | 2 +-
Modules/IO/GE/include/itkGEAdwImageIOFactory.h | 2 +-
Modules/IO/GE/itk-module.cmake | 6 +-
Modules/IO/GE/src/Ge4xHdr.h | 326 ++++
Modules/IO/GE/src/Ge5xHdr.h | 855 ++++++++++
Modules/IO/GE/src/itkGE5ImageIO.cxx | 8 +-
Modules/IO/GE/test/CMakeLists.txt | 2 +
Modules/IO/GIPL/include/itkGiplImageIO.h | 2 +-
Modules/IO/GIPL/include/itkGiplImageIOFactory.h | 2 +-
Modules/IO/GIPL/itk-module.cmake | 2 +
Modules/IO/HDF5/include/itkHDF5ImageIO.h | 6 +-
Modules/IO/HDF5/include/itkHDF5ImageIOFactory.h | 2 +-
Modules/IO/HDF5/itk-module.cmake | 2 +
Modules/IO/HDF5/src/itkHDF5ImageIO.cxx | 151 +-
.../test/itkHDF5ImageIOStreamingReadWriteTest.cxx | 2 +-
Modules/IO/HDF5/test/itkHDF5ImageIOTest.cxx | 28 +
Modules/IO/IPL/include/itkIPLCommonImageIO.h | 2 +-
.../include/itkArchetypeSeriesFileNames.h | 2 +-
Modules/IO/ImageBase/include/itkIOTestHelper.h | 14 +
Modules/IO/ImageBase/include/itkImageFileReader.h | 2 +-
.../IO/ImageBase/include/itkImageFileReader.hxx | 4 +
.../include/itkImageFileReaderException.h | 2 +-
Modules/IO/ImageBase/include/itkImageFileWriter.h | 4 +-
Modules/IO/ImageBase/include/itkImageIOBase.h | 6 +-
Modules/IO/ImageBase/include/itkImageIOFactory.h | 2 +-
.../IO/ImageBase/include/itkImageSeriesReader.h | 2 +-
.../IO/ImageBase/include/itkImageSeriesWriter.h | 4 +-
.../ImageBase/include/itkNumericSeriesFileNames.h | 2 +-
.../include/itkRegularExpressionSeriesFileNames.h | 2 +-
.../ImageBase/src/itkImageFileReaderException.cxx | 2 +-
Modules/IO/ImageBase/src/itkImageFileWriter.cxx | 2 +-
Modules/IO/ImageBase/src/itkImageIOBase.cxx | 50 +
Modules/IO/ImageBase/src/itkImageSeriesWriter.cxx | 2 +-
Modules/IO/ImageBase/test/CMakeLists.txt | 16 +
Modules/IO/ImageBase/test/Input/Test64bit.mha.md5 | 1 +
.../IO/ImageBase/test/Input/Test64bit.mha.sha512 | 1 +
Modules/IO/ImageBase/test/Input/Test64bit.nrrd.md5 | 1 +
.../IO/ImageBase/test/Input/Test64bit.nrrd.sha512 | 1 +
Modules/IO/ImageBase/test/itk64bitTest.cxx | 101 ++
Modules/IO/ImageBase/test/itkImageIOBaseTest.cxx | 3 +-
Modules/IO/JPEG/include/itkJPEGImageIO.h | 2 +-
Modules/IO/JPEG/include/itkJPEGImageIOFactory.h | 2 +-
Modules/IO/JPEG/itk-module.cmake | 2 +
Modules/IO/LSM/include/itkLSMImageIO.h | 2 +-
Modules/IO/LSM/include/itkLSMImageIOFactory.h | 2 +-
Modules/IO/LSM/itk-module.cmake | 2 +
Modules/IO/LSM/test/CMakeLists.txt | 3 +-
Modules/IO/MINC/include/itkMINCImageIO.h | 44 +-
Modules/IO/MINC/include/itkMINCImageIOFactory.h | 2 +-
Modules/IO/MINC/itk-module.cmake | 4 +-
Modules/IO/MINC/src/itkMINCImageIO.cxx | 393 +++--
Modules/IO/MINC/test/CMakeLists.txt | 385 +----
Modules/IO/MINC/wrapping/CMakeLists.txt | 3 +
Modules/IO/MINC/wrapping/itkMINCImageIO.wrap | 2 +
Modules/IO/MRC/include/itkMRCHeaderObject.h | 2 +-
Modules/IO/MRC/include/itkMRCImageIOFactory.h | 2 +-
Modules/IO/MRC/itk-module.cmake | 2 +
Modules/IO/MRC/src/itkMRCImageIO.cxx | 2 +-
Modules/IO/MRC/src/itkMRCImageIOPrivate.h | 2 +-
Modules/IO/Mesh/include/itkBYUMeshIO.h | 2 +-
Modules/IO/Mesh/include/itkBYUMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkFreeSurferAsciiMeshIO.h | 2 +-
.../Mesh/include/itkFreeSurferAsciiMeshIOFactory.h | 2 +-
.../IO/Mesh/include/itkFreeSurferBinaryMeshIO.h | 2 +-
.../include/itkFreeSurferBinaryMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkGiftiMeshIO.h | 16 +-
Modules/IO/Mesh/include/itkGiftiMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkMeshFileReader.h | 2 +-
.../IO/Mesh/include/itkMeshFileReaderException.h | 2 +-
Modules/IO/Mesh/include/itkMeshFileWriter.h | 2 +-
.../IO/Mesh/include/itkMeshFileWriterException.h | 2 +-
Modules/IO/Mesh/include/itkMeshIOBase.h | 2 +-
Modules/IO/Mesh/include/itkMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkOBJMeshIO.h | 4 +-
Modules/IO/Mesh/include/itkOBJMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkOFFMeshIO.h | 2 +-
Modules/IO/Mesh/include/itkOFFMeshIOFactory.h | 2 +-
Modules/IO/Mesh/include/itkVTKPolyDataMeshIO.h | 5 +-
.../IO/Mesh/include/itkVTKPolyDataMeshIOFactory.h | 2 +-
Modules/IO/Mesh/src/itkGiftiMeshIO.cxx | 29 +-
Modules/IO/Mesh/src/itkMeshFileReaderException.cxx | 2 +-
Modules/IO/Mesh/src/itkMeshFileWriterException.cxx | 2 +-
Modules/IO/Mesh/src/itkMeshIOBase.cxx | 2 +-
Modules/IO/Mesh/src/itkOBJMeshIO.cxx | 81 +-
Modules/IO/Mesh/src/itkVTKPolyDataMeshIO.cxx | 473 +-----
Modules/IO/Mesh/wrapping/CMakeLists.txt | 8 +
Modules/IO/Mesh/wrapping/itkBYUMeshIO.wrap | 2 +
.../IO/Mesh/wrapping/itkFreeSurferAsciiMeshIO.wrap | 2 +
.../Mesh/wrapping/itkFreeSurferBinaryMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkMeshFileReader.wrap | 15 +
Modules/IO/Mesh/wrapping/itkMeshFileWriter.wrap | 15 +
Modules/IO/Mesh/wrapping/itkMeshIOBase.wrap | 1 +
Modules/IO/Mesh/wrapping/itkMeshIOFactory.wrap | 1 +
Modules/IO/Mesh/wrapping/itkOBJMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkOFFMeshIO.wrap | 2 +
Modules/IO/Mesh/wrapping/itkVTKPolyDataMeshIO.wrap | 2 +
Modules/IO/Meta/include/itkMetaArrayReader.h | 2 +-
Modules/IO/Meta/include/itkMetaArrayWriter.h | 2 +-
Modules/IO/Meta/include/itkMetaImageIO.h | 17 +-
Modules/IO/Meta/include/itkMetaImageIOFactory.h | 2 +-
Modules/IO/Meta/itk-module.cmake | 2 +
Modules/IO/Meta/src/itkMetaImageIO.cxx | 79 +-
.../IO/Meta/test/itkMetaImageIOMetaDataTest.cxx | 20 +
Modules/IO/Meta/test/testMetaImage.cxx | 143 ++
Modules/IO/NIFTI/include/itkNiftiImageIO.h | 21 +-
Modules/IO/NIFTI/include/itkNiftiImageIOFactory.h | 2 +-
Modules/IO/NIFTI/itk-module.cmake | 2 +
Modules/IO/NIFTI/src/itkNiftiImageIO.cxx | 127 +-
.../Baseline/SlopeInterceptUCHAR-midSlice.nrrd.md5 | 1 +
.../SlopeInterceptUCHAR-midSlice.nrrd.sha512 | 1 +
Modules/IO/NIFTI/test/CMakeLists.txt | 4 +
.../test/Input/SlopeInterceptUCHAR.nii.gz.md5 | 1 +
.../test/Input/SlopeInterceptUCHAR.nii.gz.sha512 | 1 +
Modules/IO/NIFTI/test/itkExtractSlice.cxx | 72 +
Modules/IO/NIFTI/test/itkNiftiImageIOTest.cxx | 30 +
Modules/IO/NIFTI/test/itkNiftiImageIOTest3.cxx | 79 +-
Modules/IO/NIFTI/test/itkNiftiImageIOTest5.cxx | 2 +
Modules/IO/NRRD/include/itkNrrdImageIO.h | 2 +-
Modules/IO/NRRD/include/itkNrrdImageIOFactory.h | 2 +-
Modules/IO/NRRD/itk-module.cmake | 2 +
Modules/IO/NRRD/src/itkNrrdImageIO.cxx | 21 +-
Modules/IO/NRRD/test/itkNrrdImageIOTest.cxx | 28 +-
Modules/IO/PNG/include/itkPNGImageIO.h | 2 +-
Modules/IO/PNG/include/itkPNGImageIOFactory.h | 2 +-
Modules/IO/PNG/itk-module.cmake | 2 +
Modules/IO/PNG/src/itkPNGImageIO.cxx | 5 +-
Modules/IO/PhilipsREC/include/itkPhilipsPAR.h | 2 +-
.../IO/PhilipsREC/include/itkPhilipsRECImageIO.h | 2 +-
.../include/itkPhilipsRECImageIOFactory.h | 2 +-
Modules/IO/PhilipsREC/itk-module.cmake | 2 +
Modules/IO/RAW/include/itkRawImageIO.h | 2 +-
Modules/IO/RAW/itk-module.cmake | 1 +
.../IO/Siemens/include/itkSiemensVisionImageIO.h | 2 +-
.../include/itkSiemensVisionImageIOFactory.h | 2 +-
.../include/itkPolygonGroupSpatialObjectXMLFile.h | 4 +-
.../include/itkSpatialObjectReader.h | 2 +-
.../include/itkSpatialObjectWriter.h | 2 +-
Modules/IO/Stimulate/include/itkStimulateImageIO.h | 2 +-
.../Stimulate/include/itkStimulateImageIOFactory.h | 2 +-
Modules/IO/Stimulate/itk-module.cmake | 2 +
Modules/IO/TIFF/include/itkTIFFImageIO.h | 2 +-
Modules/IO/TIFF/include/itkTIFFImageIOFactory.h | 2 +-
Modules/IO/TIFF/itk-module.cmake | 2 +
.../include/itkCompositeTransformIOHelper.hxx | 2 +-
.../TransformBase/include/itkTransformFileReader.h | 2 +-
.../TransformBase/include/itkTransformFileWriter.h | 2 +-
.../IO/TransformBase/include/itkTransformIOBase.h | 2 +-
.../TransformBase/include/itkTransformIOFactory.h | 2 +-
.../include/itkTransformFactoryBase.h | 2 +-
.../IO/TransformHDF5/include/itkHDF5TransformIO.h | 2 +-
.../include/itkHDF5TransformIOFactory.h | 2 +-
Modules/IO/TransformHDF5/itk-module.cmake | 2 +
.../include/itkTxtTransformIO.h | 2 +-
.../include/itkTxtTransformIOFactory.h | 2 +-
Modules/IO/TransformInsightLegacy/itk-module.cmake | 2 +
.../include/itkMINCTransformAdapter.h | 4 +-
.../IO/TransformMINC/include/itkMINCTransformIO.h | 2 +-
.../TransformMINC/include/itkMINCTransformIO.hxx | 4 +-
.../include/itkMINCTransformIOFactory.h | 2 +-
Modules/IO/TransformMINC/itk-module.cmake | 2 +
.../TransformMatlab/include/itkMatlabTransformIO.h | 2 +-
.../include/itkMatlabTransformIOFactory.h | 2 +-
Modules/IO/TransformMatlab/itk-module.cmake | 2 +
Modules/IO/VTK/include/itkVTKImageIO.h | 3 +-
Modules/IO/VTK/include/itkVTKImageIOFactory.h | 2 +-
Modules/IO/VTK/itk-module.cmake | 2 +
Modules/IO/VTK/src/itkVTKImageIO.cxx | 70 +-
Modules/IO/VTK/test/itkVTKImageIO2Test.cxx | 505 +-----
Modules/IO/VTK/test/itkVTKImageIOStreamTest.cxx | 4 +-
Modules/IO/VTK/test/itkVTKImageIOTest.cxx | 166 +-
Modules/IO/XML/include/itkXMLFile.h | 2 +-
.../Nonunit/Review/include/itkBruker2DSEQImageIO.h | 208 ---
.../Review/include/itkBruker2DSEQImageIOFactory.h | 75 -
.../itkDiffeomorphicDemonsRegistrationFilter.h | 220 ---
...iscreteGradientMagnitudeGaussianImageFunction.h | 2 +-
.../include/itkESMDemonsRegistrationFunction.h | 289 ----
...tkFastSymmetricForcesDemonsRegistrationFilter.h | 194 ---
.../Nonunit/Review/include/itkJPEG2000ImageIO.h | 2 +-
.../Review/include/itkJPEG2000ImageIOFactory.h | 2 +-
.../include/itkMaskedMovingHistogramImageFilter.h | 181 --
.../Review/include/itkMaskedRankImageFilter.h | 140 --
Modules/Nonunit/Review/include/itkRankHistogram.h | 400 -----
.../Nonunit/Review/include/itkRankImageFilter.h | 141 --
.../itkRobustAutomaticThresholdCalculator.h | 2 +-
.../itkRobustAutomaticThresholdImageFilter.h | 2 +-
Modules/Nonunit/Review/src/CMakeLists.txt | 2 -
.../Nonunit/Review/src/itkBruker2DSEQImageIO.cxx | 1743 --------------------
.../Review/src/itkBruker2DSEQImageIOFactory.cxx | 57 -
Modules/Nonunit/Review/src/itkJPEG2000ImageIO.cxx | 4 +-
Modules/Nonunit/Review/test/CMakeLists.txt | 101 +-
.../Review/test/itkBruker2DSEQImageIOTest.cxx | 60 -
.../Nonunit/Review/test/itkImageFunctionTest.cxx | 2 +-
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.../include/itkImageGaussianModelEstimator.h | 2 +-
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.../include/itkConnectedComponentImageFilter.h | 19 +-
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.../include/itkBinaryImageToLevelSetImageAdaptor.h | 10 +-
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debian/changelog | 19 +
debian/control | 41 +-
debian/control.in | 3 +-
debian/copyright | 25 +
...TKv3MultiResImageRegistrationTest_correct.patch | 6 +-
debian/patches/atomic_load.patch | 9 +-
debian/patches/bsd-hdf5.patch | 18 -
debian/patches/castxml-define-gccxml.patch | 10 -
debian/patches/disable-doxygen.patch | 36 +
debian/patches/fix-minc-includes.patch | 36 +
.../flatStructuringElementTest_fix_rescale.patch | 6 +-
...k4.10-correct_itkMathDetail_include-order.patch | 16 -
debian/patches/itk4.10-enable-system-nifti.patch | 23 +-
debian/patches/itk4.10.0_itkTriangleHelper.h.patch | 19 -
debian/patches/itk4.12.0-resource_cprobe.patch | 6 +-
debian/patches/nrrdio-linking.patch | 4 +-
debian/patches/series | 4 +-
debian/patches/simplify-system-gtest.patch | 34 +
debian/patches/vnl_complex_test_accuracy.patch | 27 -
debian/rules | 11 +-
debian/source/lintian-overrides | 12 +
2572 files changed, 29954 insertions(+), 17941 deletions(-)
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create mode 100644 Modules/Filtering/ImageGrid/include/itkSliceImageFilter.h
create mode 100644 Modules/Filtering/ImageGrid/include/itkSliceImageFilter.hxx
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create mode 100644 Modules/Filtering/ImageIntensity/include/itkArithmeticOpsFunctors.h
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create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkMaskedMovingHistogramImageFilter.h
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create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkMaskedRankImageFilter.h
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/include/itkMaskedRankImageFilter.hxx (100%)
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkRankHistogram.h
create mode 100644 Modules/Filtering/MathematicalMorphology/include/itkRankImageFilter.h
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/include/itkRankImageFilter.hxx (100%)
create mode 100644 Modules/Filtering/MathematicalMorphology/test/Baseline/cthead1RegionalMaximal-ref1.png.sha512
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rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMapMaskedRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMapRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkMaskedRankImageFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Filtering/MathematicalMorphology}/test/itkRankImageFilterTest.cxx (100%)
create mode 100644 Modules/IO/Bruker/CMakeLists.txt
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create mode 100644 Modules/IO/Bruker/itk-module.cmake
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create mode 100644 Modules/IO/Bruker/src/itkBruker2dseqImageIOFactory.cxx
create mode 100644 Modules/IO/Bruker/test/Baseline/PV5.1_FSE_INT16.mha.md5
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create mode 100644 Modules/IO/Bruker/test/Input/PV5.1_FSE/pdata/1/2dseq.md5
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create mode 100644 Modules/IO/Bruker/test/Input/PV6.0_FLASH/pdata/3/2dseq.md5
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create mode 100644 Modules/IO/MINC/wrapping/CMakeLists.txt
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create mode 100644 Modules/IO/Mesh/wrapping/CMakeLists.txt
create mode 100644 Modules/IO/Mesh/wrapping/itkBYUMeshIO.wrap
create mode 100644 Modules/IO/Mesh/wrapping/itkFreeSurferAsciiMeshIO.wrap
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create mode 100644 Modules/IO/Mesh/wrapping/itkMeshIOBase.wrap
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create mode 100644 Modules/IO/Mesh/wrapping/itkOBJMeshIO.wrap
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create mode 100644 Modules/Numerics/Optimizersv4/include/itkCommandIterationUpdatev4.h
create mode 100644 Modules/Numerics/Optimizersv4/include/itkLBFGS2Optimizerv4.h
create mode 100644 Modules/Numerics/Optimizersv4/src/itkLBFGS2Optimizerv4.cxx
create mode 100644 Modules/Numerics/Optimizersv4/test/itkLBFGS2Optimizerv4Test.cxx
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkCorrelationImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkDemonsImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/Metricsv4/wrapping/itkJointHistogramMutualInformationImageToImageMetricv4.wrap
create mode 100644 Modules/Registration/PDEDeformable/include/itkDiffeomorphicDemonsRegistrationFilter.h
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/include/itkDiffeomorphicDemonsRegistrationFilter.hxx (100%)
create mode 100644 Modules/Registration/PDEDeformable/include/itkESMDemonsRegistrationFunction.h
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/include/itkESMDemonsRegistrationFunction.hxx (100%)
create mode 100644 Modules/Registration/PDEDeformable/include/itkFastSymmetricForcesDemonsRegistrationFilter.h
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rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkDiffeomorphicDemonsRegistrationFilterTest.cxx (100%)
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkDiffeomorphicDemonsRegistrationFilterTest2.cxx (100%)
rename Modules/{Nonunit/Review => Registration/PDEDeformable}/test/itkFastSymmetricForcesDemonsRegistrationFilterTest.cxx (100%)
create mode 100644 Modules/Remote/IsotropicWavelets.remote.cmake
create mode 100644 Modules/Remote/SimpleITKFilters.remote.cmake
create mode 100644 Modules/Remote/TBBImageToImageFilter.remote.cmake
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