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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/centrifuge">Debian Med / centrifuge</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/centrifuge/commit/72a3eac6aea4d8e02e6bc90d05a3e6fc025023e8">72a3eac6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-14T14:14:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Move hisat2 and jellyfish to Build-Depends to make sure package builds only on those architectures where it can be installed later
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/centrifuge/commit/68ba93326752d2f99b011e47d270707f2f8510b4">68ba9332</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-14T14:17:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">-msse2 is already enabled by default on amd64 (which is the only architecture the package runs anyway)
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/centrifuge/commit/a6b311f08d985af1c953f517a0733119277ffda0">a6b311f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-14T14:18:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/centrifuge/commit/5df6ab6162a9591933222435ec7bf020ba95e6d5">5df6ab61</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-14T15:09:48+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#c0cdc46f345c5f6e7ac58a9c2a918898333a9787">
<span class="new-file">
+
debian/patches/no_msse2.patch
</span>
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">centrifuge (1.0.3~beta-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Move hisat2 and jellyfish to Build-Depends to make sure package builds</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> only on those architectures where it can be installed later</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * -msse2 is already enabled by default on amd64 (which is the only</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> architecture the package runs anyway)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Closes: #890378</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * debhelper 11</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 14 Feb 2018 14:18:27 +0100</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">centrifuge (1.0.3~beta-1) unstable; urgency=low</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Initial release (Closes: #886463)</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,9 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 10)</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> hisat2,</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> jellyfish</span>
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7
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Standards-Version: 4.1.3</span>
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8
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/centrifuge.git</span>
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9
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://anonscm.debian.org/git/debian-med/centrifuge.git</span>
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<li id="c0cdc46f345c5f6e7ac58a9c2a918898333a9787">
<a href="https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5#c0cdc46f345c5f6e7ac58a9c2a918898333a9787"><strong>debian/patches/no_msse2.patch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: -msse2 is already enabled by default on amd64 (which is the only </span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> architecture the package runs anyway)</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/890378</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Last-Update: Wed, 14 Feb 2018 14:12:11 +0100</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -160,7 +160,7 @@ endif</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> ifeq (64,$(BITS))</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> BITS_FLAG = -m64</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> endif</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-SSE_FLAG=-msse2</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+SSE_FLAG=</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> DEBUG_FLAGS = -O0 -g3 $(BIToS_FLAG) $(SSE_FLAG)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> DEBUG_DEFS = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS)\""</span></pre>
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<a href="https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ fix_auto_ptr_usage_in_gcc-7.patch</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">0002-Fix-build-with-rank.patch</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0003-Fix-make-install-DESTDIR.patch</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">hardening.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">no_msse2.patch</span></pre>
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