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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pysam">Debian Med / python-pysam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/b26a5cb111f5046678b891aca5512a2d0bcc66ab">b26a5cb1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:37:46+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/f5a61b70f6a753db1204146e69900dd39fe40b3c">f5a61b70</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:39:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop removed files from d/copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/b0e362291fccde9c0e71d3f15367b7b4d847717f">b0e36229</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:40:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/1178ce77d7973448c51fc267b5bd1caa5eace1bc">1178ce77</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:41:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Silence lintian
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/41efb5499161ff78c97da90dd258ad2018c68662">41efb549</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:42:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop unused lintian override
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/75367b937ba155d6f0d5bda515a83c83d25c4966">75367b93</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:45:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update lintian overrides
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/52c8ec108f8d68f9635e2099fa7540e8d534fced">52c8ec10</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T21:56:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#c0968845ef64303d5ddb227b9b727137bee71a01">
debian/patches/execute-linking-tests-only-when-explicitely-reque.patch
</a>
</li>
<li class="file-stats">
<a href="#9dcc9ec9a663900ee0fc3709a09c0573d3db2d98">
debian/python-pysam-tests.lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#85ccdeeb03055211183e48520592d9a93592b330">
<span class="deleted-file">
−
debian/source/lintian-overrides
</span>
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
<table class="code white" style="font-family: monospace; font-size: 12px;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
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<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">python-pysam (0.14+ds-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-pysam (0.14+ds-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * d/rules: Exclude tests using http access</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,8 +7,10 @@ python-pysam (0.14+ds-1) UNRELEASED; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * do not remove samtools/tmp_file.h in clean target</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * do not depend from non-existing data file in make test target</span>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Update d/copyright</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Update lintian overrides</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 17 Feb 2018 <span class="idiff left right">15:24:34</span> +0100</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 17 Feb 2018 <span class="idiff left right">21:45:07</span> +0100</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">python-pysam (0.13.0+ds-1) unstable; urgency=medium</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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</li>
<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: http<span class="idiff left right">s</span>://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: pysam</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Andreas Heger <andreas.heger@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: https://github.com/pysam-developers/pysam</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Files-Excluded: htslib/*</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Copyright: 2009-201<span class="idiff left right">6</span> Andreas Heger,</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Copyright: 2009-201<span class="idiff left right">8</span> Andreas Heger,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> Tildon Grant Belgrad,</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Martin Goodson,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> Kevin Jacobs <jacobs@bionformed.com></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,7 +14,7 @@ License: MIT</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Files: bcftools/*</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Copyright:</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> 2013-201<span class="idiff left right">5</span> Genome Research Ltd.</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> 2013-201<span class="idiff left right">8</span> Genome Research Ltd.</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> 2010-2011 Broad Institute</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,10 +39,6 @@ Copyright: 2008-2014 Genome Research Ltd.</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> 2012-2013 Peter Cock, The James Hutton Institute</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext">Files: samtools/kprobaln.c samtools/kprobaln.c.pysam.c samtools/kprobaln.h</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext">Copyright: 2003-2006, 2008-2010, by Heng Li <lh3lh3@live.co.uk></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">Files: samtools/misc/ace2sam.*</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Copyright: 2011 Heng Li</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">License: MIT</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +87,7 @@ Copyright:</td>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> 2015-2016 Afif Elghraoui <afif@debian.org></span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> 2015 Jorge Soares <j.s.soares@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> 2014-2015 Charles Plessy <plessy@debian.org></span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> 2014-201<span class="idiff left right">5</span> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> 2014-201<span class="idiff left right">8</span> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext">License: BSD-3-clause</span>
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<li id="c0968845ef64303d5ddb227b9b727137bee71a01">
<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#c0968845ef64303d5ddb227b9b727137bee71a01"><strong>debian/patches/execute-linking-tests-only-when-explicitely-reque.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">From: Andreas Heger <andreas.heger@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Date: Mon, 18 Sep 2017 11:19:28 +0100</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/871083</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff">Subject: execute linking tests only when explicit<span class="idiff left right">e</span>ly</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Subject: execute linking tests only when explicitly</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> requested via PYSAM_LINKING_TESTS env var. Keep on travis. Fixes #534</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">---</span>
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<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#9dcc9ec9a663900ee0fc3709a09c0573d3db2d98"><strong>debian/python-pysam-tests.lintian-overrides</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,4 +2,4 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">zero-byte-file-in-doc-directory usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"># The duplicate is used for testing and needs to be there</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">duplicated-compressed-file usr/share/doc/python-pysam/tests/<span class="idiff left right">pysam_data/ex1.fa</span>.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">duplicated-compressed-file usr/share/doc/python-pysam/tests/<span class="idiff left right">tabix_data/example.bed</span>.gz</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#85ccdeeb03055211183e48520592d9a93592b330"><strong>debian/source/lintian-overrides</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"># lintian seems to wild guess here from the package name but the test data are for python and python3</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">python-pysam source: python-foo-but-no-python3-foo python-pysam-tests</span></pre>
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<a href="https://salsa.debian.org/med-team/python-pysam/compare/933b6426545ae28f68fab60490fe3bc1376fdc8e...52c8ec108f8d68f9635e2099fa7540e8d534fced#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Depends:</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> @builddeps@,</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> python-pysam,</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @builddeps@, python-pysam</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr, rw-build-tree</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Test-Command: make -C tests/pysam_data && make -C tests/cbcf_data && pytest-3</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Depends:</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> @builddeps@,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> python3-pysam,</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Depends: @builddeps@, python3-pysam,</span>
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11
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Restrictions: allow-stderr, rw-build-tree</span></pre>
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