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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-pysam">Debian Med / python-pysam</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/5aa6792bd7dd9b57187fe1816f1d1dee7028141e">5aa6792b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T14:42:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.14+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/e4a71705cf5c7cd8cc81886ca83b6b0cc09f363e">e4a71705</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T14:42:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.14+ds'
Update to upstream version '0.14+ds'
with Debian dir 59d7cbfb7f83d1d8a2700a77ac80a1f46e4136e0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/5ba04e28410af0197d473c6b429a1919a67dc00e">5ba04e28</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T14:50:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches and exclude tests using http access
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/18260489bfb8cfc1d1f3b1b4a09b92f9d1209de1">18260489</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T15:22:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump versioned dependencies to samtools and related from 1.6 to 1.7
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/997f3a427d71f859ecf39a9fba700af0c4a8e036">997f3a42</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T15:24:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cme fix dpkg-control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/1f4b2b84ac537dd5ebb6b64ee987c3dda65e2d32">1f4b2b84</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T15:24:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-pysam/commit/573a161da5f04049b8f8fb1faf176f4f14b0af83">573a161d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-17T15:58:33+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">do not remove samtools/tmp_file.h in clean target
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#7185eb962adfd66adb491ab9286940ad1c4c47a9">
bcftools/HMM.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#74d5e4573ce694cb34f610ad7397afdc133ab7d6">
bcftools/bam2bcf.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#16f088e739673bc8d64a629169048fe9d5d9ecc9">
bcftools/bam2bcf_indel.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#450b0e2f272e42321e318d25894a9dfaa2d1b552">
bcftools/bam_sample.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#dcbf5d862f73e0b8009ca21756e0653995c68054">
<span class="new-file">
+
bcftools/bcftools.pysam.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#0dd5d0dba97ac3f2f776b5f876ba12d31d6b9e0a">
<span class="new-file">
+
bcftools/bcftools.pysam.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#471373f0a41bf4702def4b896ca11b3dde06baff">
bcftools/bin.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#a151a21f5986a16c72da3007a846a506887fd164">
bcftools/ccall.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#5ab08c680272b1f43f9129cb0917e24e6e3f2f72">
bcftools/consensus.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#a7b8dc8b4cc2469dd5b0351aca5038b7a20b1efc">
bcftools/convert.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#11fd9c587c6ace63e6aa709f33371ebce6eecdd3">
bcftools/csq.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#df9b3c583acf8890114662b00d4939a2a0670867">
bcftools/em.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#a5a42f31a30e433ff556f80e9c25a64d47ffabc3">
bcftools/filter.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#4236d107eb99e8eebbcadd10a02f60aecaf12a93">
bcftools/gvcf.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#3f76e421a04865e5cfb3f27466c8a8401fc42c18">
bcftools/hclust.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#27c300178719c12c6f8e0bb445a219ee5dcfcd5c">
bcftools/kmin.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#31f1631ecc8365f1248fe81bb8ef7c48fafe3158">
bcftools/main.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#f589bc6fa753203bd7fbfab3a56bf9fa5176a3e1">
bcftools/mcall.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#2a60e79a2b60faaa20101e392a1b4f0381c2b19e">
bcftools/mpileup.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#3dee7650ca2a9a4c823d610684b7fa0700b0c5c7">
bcftools/ploidy.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#1e6ee61ca164ccbeb6bdf35f908696ed34c30102">
bcftools/prob1.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#d5f560e5cd603b5ba3cd986c43982240bd47de16">
<span class="deleted-file">
−
bcftools/pysam.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#ef4cca62a487add7d5ef88de6f81b1cb7e4665dc">
bcftools/regidx.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#1b055bee9c7c710f189ac201a1f55ab2e71ec207">
<span class="new-file">
+
bcftools/reheader.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#0f606bffcfcbe17b2a50e45b5782555676837d94">
<span class="new-file">
+
bcftools/reheader.c.pysam.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7b949fa221a0b8f292c58cdedd0c442fc0c5695">
bcftools/smpl_ilist.c.pysam.c
</a>
</li>
<li class="file-stats">
<a href="#64b3afbc5916fc7c8fc0ec938b5b2357d564e41f">
bcftools/tabix.c.pysam.c
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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