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<h3>
Afif Elghraoui pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/fast5">Debian Med / fast5</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast5/commit/895c2bf864812eaa8904460fab0ed80eecec4e29">895c2bf8</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-02-17T20:34:32-05:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.6.5</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9544f0f7b14b5fb3648f541fbbf5a3eb339d718d">
include/fast5/hdf5_tools.hpp
</a>
</li>
<li class="file-stats">
<a href="#189d34932cc86e4cdbeb297250c4c304154a2b7c">
src/hdf5-mod.cpp
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<h4>Changes:</h4>
<li id="9544f0f7b14b5fb3648f541fbbf5a3eb339d718d">
<a href="https://salsa.debian.org/med-team/fast5/commit/895c2bf864812eaa8904460fab0ed80eecec4e29#9544f0f7b14b5fb3648f541fbbf5a3eb339d718d"><strong>include/fast5/hdf5_tools.hpp</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,17 +26,13 @@</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <type_traits></span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">/// Original HDF5 C API.</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">hdf5</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifndef DOXY</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <hdf5.h></span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">/// New C++ wrapper for the HDF5 C API.</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">hdf5_tools</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="cpp"><span class="k" style="font-weight: 600;">using</span> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">hdf5</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">/// Exception class thrown by failed hdf5 operations.</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="cpp"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">Exception</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2244" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2248,15 +2244,15 @@ public:</td>
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2248
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<pre style="margin: 0;"> <span id="LC2244" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HDF_Object_Holder</span> <span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">(</span></span>
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<td class="diff-line-num old_line" data-linenumber="2249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2249
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<td class="diff-line-num new_line" data-linenumber="2245" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2245
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<pre style="margin: 0;"> <span id="LC2245" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">wrap</span><span class="p">(</span><span class="n" style="color: #333;">H5Aget_type</span><span class="p">,</span> <span class="n" style="color: #333;">src_attr_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC2246" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">wrapped_closer</span><span class="p">(</span><span class="n" style="color: #333;">H5Tclose</span><span class="p">));</span></span>
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2251
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<td class="diff-line-num new_line old" data-linenumber="2247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2251" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_INTEGER</span><span class="p">)</span></span>
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2247
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<pre style="margin: 0;">+<span id="LC2247" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_INTEGER</span><span class="p">)</span></span>
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2252
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<td class="diff-line-num new_line" data-linenumber="2248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2248
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<pre style="margin: 0;"> <span id="LC2248" class="line" lang="cpp"> <span class="p">{</span></span>
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2253
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<td class="diff-line-num new_line old" data-linenumber="2249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2253" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_sign</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_SGN_NONE</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2249
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<pre style="margin: 0;">+<span id="LC2249" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">H5Tget_sign</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_SGN_NONE</span><span class="p">)</span></span>
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2254
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<td class="diff-line-num new_line" data-linenumber="2250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2250
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<pre style="margin: 0;"> <span id="LC2250" class="line" lang="cpp"> <span class="p">{</span></span>
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2255
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<td class="diff-line-num new_line" data-linenumber="2251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2251
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<pre style="margin: 0;"> <span id="LC2251" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">tmp</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="2256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2256
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<td class="diff-line-num new_line" data-linenumber="2252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2252
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<pre style="margin: 0;"> <span id="LC2252" class="line" lang="cpp"> <span class="n" style="color: #333;">src_f</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">src_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="2257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2257
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<td class="diff-line-num new_line" data-linenumber="2253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2253
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<pre style="margin: 0;"> <span id="LC2253" class="line" lang="cpp"> <span class="n" style="color: #333;">dst_f</span><span class="p">.</span><span class="n" style="color: #333;">write_attribute</span><span class="p">(</span><span class="n" style="color: #333;">dst_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">,</span> <span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="2258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2258
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2254
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<pre style="margin: 0;"> <span id="LC2254" class="line" lang="cpp"> <span class="p">}</span></span>
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2259
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<pre style="margin: 0;">-<span id="LC2259" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_sign</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_SGN_2</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="2260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2255
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<pre style="margin: 0;">+<span id="LC2255" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">H5Tget_sign</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_SGN_2</span><span class="p">)</span></span>
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2260
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2256
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<pre style="margin: 0;"> <span id="LC2256" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="2261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2261
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2257
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<pre style="margin: 0;"> <span id="LC2257" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">tmp</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="2262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2262
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<td class="diff-line-num new_line" data-linenumber="2258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2258
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<pre style="margin: 0;"> <span id="LC2258" class="line" lang="cpp"> <span class="n" style="color: #333;">src_f</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">src_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2267,17 +2263,17 @@ public:</td>
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2267
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2263
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<pre style="margin: 0;"> <span id="LC2263" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">"error in H5Tget_sign"</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="2268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2268
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2264
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<pre style="margin: 0;"> <span id="LC2264" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old_line" data-linenumber="2269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2269
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<td class="diff-line-num new_line" data-linenumber="2265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2265
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<pre style="margin: 0;"> <span id="LC2265" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2270
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<pre style="margin: 0;">-<span id="LC2270" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_FLOAT</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC2266" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_FLOAT</span><span class="p">)</span></span>
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2271
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2267
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<pre style="margin: 0;"> <span id="LC2267" class="line" lang="cpp"> <span class="p">{</span></span>
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2272
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2268
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<pre style="margin: 0;"> <span id="LC2268" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="kt" style="color: #458; font-weight: 600;">double</span> <span class="n" style="color: #333;">tmp</span><span class="p">;</span></span>
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2273
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2269
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<pre style="margin: 0;"> <span id="LC2269" class="line" lang="cpp"> <span class="n" style="color: #333;">src_f</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">src_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">);</span></span>
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2274
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2270
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<pre style="margin: 0;"> <span id="LC2270" class="line" lang="cpp"> <span class="n" style="color: #333;">dst_f</span><span class="p">.</span><span class="n" style="color: #333;">write_attribute</span><span class="p">(</span><span class="n" style="color: #333;">dst_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">,</span> <span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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2275
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2271
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<pre style="margin: 0;"> <span id="LC2271" class="line" lang="cpp"> <span class="p">}</span></span>
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2276
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<pre style="margin: 0;">-<span id="LC2276" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_STRING</span><span class="p">)</span></span>
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2272
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<pre style="margin: 0;">+<span id="LC2272" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">H5Tget_class</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5T_STRING</span><span class="p">)</span></span>
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2277
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2273
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<pre style="margin: 0;"> <span id="LC2273" class="line" lang="cpp"> <span class="p">{</span></span>
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2278
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2274
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<pre style="margin: 0;"> <span id="LC2274" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">tmp</span><span class="p">;</span></span>
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2279
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2275
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<pre style="margin: 0;"> <span id="LC2275" class="line" lang="cpp"> <span class="n" style="color: #333;">src_f</span><span class="p">.</span><span class="n" style="color: #333;">read</span><span class="p">(</span><span class="n" style="color: #333;">src_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">);</span></span>
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2280
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<pre style="margin: 0;">-<span id="LC2280" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">auto</span> <span class="n" style="color: #333;">is_varlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tis_variable_str</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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2276
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<pre style="margin: 0;">+<span id="LC2276" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">auto</span> <span class="n" style="color: #333;">is_varlen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">H5Tis_variable_str</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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2281
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2277
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<pre style="margin: 0;"> <span id="LC2277" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_varlen</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">"error in H5Tis_variable_str"</span><span class="p">);</span></span>
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2282
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2278
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<pre style="margin: 0;"> <span id="LC2278" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">is_varlen</span><span class="p">)</span></span>
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2279
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<pre style="margin: 0;"> <span id="LC2279" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2286,12 +2282,12 @@ public:</td>
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2286
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2282
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<pre style="margin: 0;"> <span id="LC2282" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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2287
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2283
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<pre style="margin: 0;"> <span id="LC2283" class="line" lang="cpp"> <span class="p">{</span></span>
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2288
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2284
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<pre style="margin: 0;"> <span id="LC2284" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// not varlen; now deal with array-of-size-1 chars</span></span>
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2289
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<pre style="margin: 0;">-<span id="LC2289" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">sz</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Tget_size</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC2285" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">sz</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">H5Tget_size</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dtype_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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2290
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2286
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<pre style="margin: 0;"> <span id="LC2286" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">sz</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">Exception</span><span class="p">(</span><span class="s" style="color: #d14;">"error in H5Tget_size"</span><span class="p">);</span></span>
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2291
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<td class="diff-line-num new_line" data-linenumber="2287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2287
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<pre style="margin: 0;"> <span id="LC2287" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HDF_Object_Holder</span> <span class="n" style="color: #333;">src_attr_dspace_id_holder</span><span class="p">(</span></span>
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2292
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2288
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<pre style="margin: 0;"> <span id="LC2288" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">wrap</span><span class="p">(</span><span class="n" style="color: #333;">H5Aget_space</span><span class="p">,</span> <span class="n" style="color: #333;">src_attr_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">),</span></span>
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2293
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2289
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<pre style="margin: 0;"> <span id="LC2289" class="line" lang="cpp"> <span class="n" style="color: #333;">detail</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">wrapped_closer</span><span class="p">(</span><span class="n" style="color: #333;">H5Sclose</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2294
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<pre style="margin: 0;">-<span id="LC2294" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">auto</span> <span class="n" style="color: #333;">dspace_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">hdf5</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">::</span></span><span class="n" style="color: #333;">H5Sget_simple_extent_type</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dspace_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC2290" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">auto</span> <span class="n" style="color: #333;">dspace_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">H5Sget_simple_extent_type</span><span class="p">(</span><span class="n" style="color: #333;">src_attr_dspace_id_holder</span><span class="p">.</span><span class="n" style="color: #333;">id</span><span class="p">);</span></span>
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2295
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2291
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<pre style="margin: 0;"> <span id="LC2291" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">dspace_type</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">H5S_SCALAR</span><span class="p">)</span></span>
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2296
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2292
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<pre style="margin: 0;"> <span id="LC2292" class="line" lang="cpp"> <span class="p">{</span></span>
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2293
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<pre style="margin: 0;"> <span id="LC2293" class="line" lang="cpp"> <span class="n" style="color: #333;">dst_f</span><span class="p">.</span><span class="n" style="color: #333;">write_attribute</span><span class="p">(</span><span class="n" style="color: #333;">dst_full_path</span><span class="p">,</span> <span class="n" style="color: #333;">tmp</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/fast5/commit/895c2bf864812eaa8904460fab0ed80eecec4e29#189d34932cc86e4cdbeb297250c4c304154a2b7c"><strong>src/hdf5-mod.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,6 @@</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <fast5/hdf5_tools.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="cpp"></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="cpp"><span class="k" style="font-weight: 600;">using</span> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">std</span><span class="p">;</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="cpp"><span class="k" style="font-weight: 600;">using</span> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">hdf5</span><span class="p">;</span></span>
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16
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="cpp"></span>
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17
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="cpp"><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">B</span></span>
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18
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="cpp"><span class="p">{</span></span>
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