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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/commit/d4aff718fed63de9dcc2ab5625c3153ef99fa38a">d4aff718</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-02-21T16:25:04+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add script to create README.source for R packages automatically
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<h4>1 changed file:</h4>
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<a href="#6caf45064168d139ebd754b68e6e53b37f5a9e31">
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+
create_README.source
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<h4>Changes:</h4>
<li id="6caf45064168d139ebd754b68e6e53b37f5a9e31">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/commit/d4aff718fed63de9dcc2ab5625c3153ef99fa38a#6caf45064168d139ebd754b68e6e53b37f5a9e31"><strong>create_README.source</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/sh</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># you can use/adapt this script to create README.source for R packages</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># featuring large amounts of binary data files</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">EOT</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="sh" style="color: #d14;">Explanation for binary files inside source package according to</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="sh" style="color: #d14;"> http://lists.debian.org/debian-devel/2013/09/msg00332.html</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="no" style="color: teal;">EOT</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>rda <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">ls</span> ../data/<span class="k" style="font-weight: 600;">*</span>.rda ../data/<span class="k" style="font-weight: 600;">*</span>.RData 2>/dev/null<span class="sb" style="color: #d14;">`</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">do</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">rdoc</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"../man/</span><span class="k" style="font-weight: 600;">$(</span>basename <span class="nv" style="color: teal;">$rda</span> .rda<span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="o" style="font-weight: 600;">!</span> <span class="nt" style="color: navy;">-e</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">rdoc</span><span class="k" style="font-weight: 600;">}</span>.Rd <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">rdoc</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"../man/</span><span class="k" style="font-weight: 600;">$(</span>basename <span class="nv" style="color: teal;">$rda</span> .RData<span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">.Rd"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: teal;">rdoc</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">rdoc</span><span class="k" style="font-weight: 600;">}</span>.Rd</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="k" style="font-weight: 600;"> if</span> <span class="o" style="font-weight: 600;">[</span> <span class="o" style="font-weight: 600;">!</span> <span class="nt" style="color: navy;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$rdoc</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"> <span class="o" style="font-weight: 600;">></span>&2 <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Verify documentation for </span><span class="nv" style="color: teal;">$rda</span><span class="s2" style="color: #d14;"> manually"</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"> <span class="k" style="font-weight: 600;">else</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Files: data/</span><span class="k" style="font-weight: 600;">$(</span>basename <span class="nv" style="color: teal;">$rda</span><span class="k" style="font-weight: 600;">)</span><span class="s2" style="color: #d14;">"</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Documented: </span><span class="nv" style="color: teal;">$rdoc</span><span class="s2" style="color: #d14;">"</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">grep</span> <span class="s1" style="color: #d14;">'\\title'</span> <span class="nv" style="color: teal;">$rdoc</span> | sed <span class="nt" style="color: navy;">-e</span> <span class="s1" style="color: #d14;">'s/^\\title{/ /'</span> <span class="nt" style="color: navy;">-e</span> <span class="s1" style="color: #d14;">'s/ *} *$//'</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">""</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: teal;">EOT</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="sh" style="color: #d14;"> -- Andreas Tille <tille@debian.org> `date -R`</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"><span class="no" style="color: teal;">EOT</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># sed -e '0,/^\\title{/d' -e '/^}/,$d' -e 's/^\\description{//' -e 's/^\([^ ]\)/ \1/' $rdoc | \</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># sed -e 's/\\code{\([^}]\+\)}/\1/g' | \</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># perl -p -e 's/\cM//g' | grep -v '^ *$' | sed -e '/^ \+\\/d' -e 's/} *$/\n#####/' | \</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># sed -e '/^#####/ { N; N; N; N; d; }' | sed -e '/^#####/ { N; N; N; d; }' | sed -e '/^#####/ { N; N; d; }' | sed -e '/^#####/ { N; d; }'</span></span></pre>
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