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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/paleomix">Debian Med / paleomix</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/commit/ba0a2620211da427a9abc71785f561d40c60e6f7">ba0a2620</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-17T11:53:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try to fix test
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/commit/d338fb3e02c8cced18322626f4f797f7c1d033c6">d338fb3e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-17T12:01:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: do not parse d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/commit/ce3a102fcc90c8b48bf99a98d89d1ec509eaa731">ce3a102f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-17T12:01:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/commit/eeff14d87782cecac9955325494f81e80cea4569">eeff14d8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-17T12:01:32+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/paleomix/commit/98efa63785554c02eafdb5b6d972f14951465af0">98efa637</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-02-28T13:30:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
debian/tests/control
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">paleomix (1.2.12-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">paleomix (1.2.12-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> * Standards-Version: 4.1.1</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Exclude one test that strangely fails</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * d/rules: do not parse d/changelog</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debhelper 11</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.1.3</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Thu, 16 Nov 2017 09:39:02</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Wed, 17 Jan 2018 12:01:36</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">paleomix (1.2.7-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,7 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>),</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>),</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python,</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python-setuptools,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +15,7 @@ Build-Depends: debhelper (>= 10),</td>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> default-jre-headless,</span>
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16
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> bowtie2,</span>
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17
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> rsync</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">1</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">3</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/paleomix.git</span>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Vcs-Git: https://anonscm.debian.org/git/debian-med/paleomix.git</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Homepage: http://geogenetics.ku.dk/publications/paleomix</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">include /usr/share/dpkg/default.mk</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">export LC_ALL=C.UTF-8</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"><span class="idiff left right">#</span>export PYBUILD_TEST_ARGS = --exclude='(test_requirementobj__version__command_not_executable)'</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">export PYBUILD_TEST_ARGS = --exclude='(test_requirementobj__version__command_not_executable)'</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dh $@ --with python2 --buildsystem=pybuild</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,9 +36,9 @@ override_dh_installdocs:</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> # since tests dir contains empty files which are used afterwards for</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> # testing and dh_installdocs is ignoring empty files we need to make</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> # sure all files are really copied</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> rsync -a -v tests debian/$(DEB<span class="idiff left right">PKGNAME)/usr/share/doc/$(DEBPKGNAM</span>E)</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> rsync -a -v tests debian/$(DEB<span class="idiff left right">_SOURCE)/usr/share/doc/$(DEB_SOURC</span>E)</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> # test runner is seeking for paleomix modules in source - we use inside the installed package</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> sed -i 's:(find paleomix -mindepth 1:(find /usr/lib/python2.7/dist-packages/paleomix -mindepth 1:' debian/*/usr/share/doc/*/tests/run</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> <span class="idiff left right">### </span>sed -i 's:(find paleomix -mindepth 1:(find /usr/lib/python2.7/dist-packages/paleomix -mindepth 1:' debian/*/usr/share/doc/*/tests/run</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> #echo "====== Also empty files belong to the docs ======"</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> #find debian -name "empty_file*"</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> #find debian -name "timestamp_*"</span>
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<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @<span class="idiff left right">, tox</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/paleomix/compare/41f9c710cf935a5ae61f3f5d8903367dcf9bf8c2...98efa63785554c02eafdb5b6d972f14951465af0#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,5 +19,4 @@ for gz in `find . -name "*.gz"` ; do</td>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"> <span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell">chmod +x tests/run</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell">tests/run</span></pre>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell">tox</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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