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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/freebayes">Debian Med / freebayes</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/76e888c7558fa09f340d961f1f46ee7968e0ba94">76e888c7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-05T15:52:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Versioned Build-Depends: libseqlib-dev (>= 1.1.1+dfsg-4)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/eca5ff03b3cebd657bc9c67d8708153f7e3cfec7">eca5ff03</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-05T16:46:20+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/0cc0e3616830376ae55f1af0f033f12e621fcbe6">0cc0e361</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-05T16:47:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/af917cf7c48900ec3f9448835452f8e6101c43d1">af917cf7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-05T16:48:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/a0c0b33a25580f0adcc9bcd3eae50469140ef800">a0c0b33a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-05T17:25:30+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc08d7bb8717df2c35a6579f71a2e30f0a832345">
debian/patches/use_debian_packaged_seqlib.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/freebayes/compare/24b55d7ecc3c69975b050d76192c3a8b5e1b7aec...a0c0b33a25580f0adcc9bcd3eae50469140ef800#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">freebayes (1.1.0-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Versioned Build-Depends: libseqlib-dev (>= 1.1.1+dfsg-4) to include all</span>
</pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> headers needed by seqlib</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.1.3</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debhelper 11</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 05 Mar 2018 16:48:22 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">freebayes (1.1.0-1) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/freebayes/compare/24b55d7ecc3c69975b050d76192c3a8b5e1b7aec...a0c0b33a25580f0adcc9bcd3eae50469140ef800#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">10</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/freebayes/compare/24b55d7ecc3c69975b050d76192c3a8b5e1b7aec...a0c0b33a25580f0adcc9bcd3eae50469140ef800#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Uploaders: Brad Chapman <chapmanb@50mail.com>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>),</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>),</span>
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> pkg-config,</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,12 +12,12 @@ Build-Depends: debhelper (>= 10),</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libbamtools-dev,</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libvcflib-dev (>= 1.0.0~rc1+dfsg1-4),</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> libtabixpp-dev,</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> libseqlib-dev,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> libseqlib-dev<span class="idiff left right"> (>= 1.1.1+dfsg-4)</span>,</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> bc,</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> samtools,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> parallel,</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> libvcflib-tools (>= 1.0.0~rc1+dfsg1-6)</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">3</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/freebayes.git</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Vcs-Git: https://anonscm.debian.org/git/debian-med/freebayes.git</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Homepage: https://github.com/ekg/freebayes</span>
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<li id="bc08d7bb8717df2c35a6579f71a2e30f0a832345">
<a href="https://salsa.debian.org/med-team/freebayes/compare/24b55d7ecc3c69975b050d76192c3a8b5e1b7aec...a0c0b33a25580f0adcc9bcd3eae50469140ef800#bc08d7bb8717df2c35a6579f71a2e30f0a832345"><strong>debian/patches/use_debian_packaged_seqlib.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Last-Update: Wed, 28 May 2014 21:23:38 +0200</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff">Description: Use Debian packaged htslib and seqlib</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> <span class="idiff left right">seqlib </span>carries another copy of htslib - we replace both</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> carries another copy of htslib - we replace both</span>
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5
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/Makefile</span></span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/Makefile</span></span>
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