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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/jellyfish">Debian Med / jellyfish</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/jellyfish/commit/adaccec5361df3bf84c755ce321dbf75f44a2e09">adaccec5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-16T10:17:17-07:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">build fastq2sam
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/jellyfish/commit/e6c05efc11a550bf04f3d3a81c29d6dcf20f9470">e6c05efc</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2018-03-16T13:51:41-07:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Incorporates suggestions from the Multiarch hinter.
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#a1b2e5e1a51be7dea0acfee0d90e875ad5c5a16d">
debian/jellyfish-examples.install
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">jellyfish (2.2.8-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Build and install fastq2sam, which fixes Debci tests</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Incorporates suggestions from the Multiarch hinter.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 16 Mar 2018 10:57:09 -0700</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">jellyfish (2.2.8-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Add the missing small_mers.sh file, courtesy upstream.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,6 +45,7 @@ Description: count k-mers in DNA sequences</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext">Package: libjellyfish-2.0-2</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">Section: libs</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> ${misc:Depends}</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,6 +69,7 @@ Description: count k-mers in DNA sequences (dynamic library of jellyfish)</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext">Package: libjellyfish-2.0-dev</span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> libjellyfish-2.0-2 (= ${binary:Version})</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -114,6 +116,7 @@ Description: count k-mers in DNA sequences (Python bindings of jellyfish)</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext">Package: libjellyfish-perl</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext">Multi-Arch: same</span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext">Section: perl</span>
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118
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext">Depends: ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> ${misc:Depends},</span>
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<a href="https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470#a1b2e5e1a51be7dea0acfee0d90e875ad5c5a16d"><strong>debian/jellyfish-examples.install</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="php"><span class="nx">bin</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">generate_sequence</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">jellyfish</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">bin</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">test_all</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">jellyfish</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">bin</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">fastq2sam</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">jellyfish</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span></span></pre>
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<a href="https://salsa.debian.org/med-team/jellyfish/compare/3952220cbaca160a19165bc19ea655ab5f66a6bc...e6c05efc11a550bf04f3d3a81c29d6dcf20f9470#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -63,7 +63,7 @@ override_dh_clean:</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> mkdir -p debian/tmp_save_tests</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> cp -a tests/* debian/tmp_save_tests</span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all<span class="idiff left right"> bin/fastq2sam</span></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"># cd doc ; RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd ..</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"># broken</span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"></span>
</pre>
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