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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libseqlib">Debian Med / libseqlib</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/libseqlib/commit/459a011874f40af998a6c178cbcda89c7e9c13b6">459a0118</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-03-17T10:51:41+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing -lz to pkg-config for linking with zlib
</pre>
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<strong><a href="https://salsa.debian.org/med-team/libseqlib/commit/75c30508b207a1a796616fd42385d8494f9b0757">75c30508</a></strong>
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<span>by Andreas Tille</span>
<i>at 2018-03-17T12:09:35+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#9282af4050bfc4ccfdc58b03281755547772cffa">
debian/patches/pkg-config.patch
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<li class="file-stats">
<a href="#dd6cf73c99414c5c542bab813e94a558066682ce">
debian/patches/use_private_htslib_headers.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libseqlib/compare/d15d15945f046b947d4218719ae56fede19eaa44...75c30508b207a1a796616fd42385d8494f9b0757#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libseqlib (1.1.1+dfsg-5) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Adam Conrad ]</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add missing -lz to pkg-config for linking with zlib</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #893192</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Sat, 17 Mar 2018 10:51:57 +0100</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">libseqlib (1.1.1+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Make sure also private headers of htslib will be installed and usable</span>
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<li id="9282af4050bfc4ccfdc58b03281755547772cffa">
<a href="https://salsa.debian.org/med-team/libseqlib/compare/d15d15945f046b947d4218719ae56fede19eaa44...75c30508b207a1a796616fd42385d8494f9b0757#9282af4050bfc4ccfdc58b03281755547772cffa"><strong>debian/patches/pkg-config.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,7 @@ Description: Add pkg-config file</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Name: libseqlib</span></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Version: @VERSION@</span></span>
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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data</span></span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Libs: -L${libdir} -lseqlib -lfml -lbwa -lssw</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Libs: -L${libdir} -lseqlib -lfml -lbwa -lssw<span class="idiff left right"> -lz</span></span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Cflags: -I${includedir}</span></span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile.am</span></span>
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<li id="dd6cf73c99414c5c542bab813e94a558066682ce">
<a href="https://salsa.debian.org/med-team/libseqlib/compare/d15d15945f046b947d4218719ae56fede19eaa44...75c30508b207a1a796616fd42385d8494f9b0757#dd6cf73c99414c5c542bab813e94a558066682ce"><strong>debian/patches/use_private_htslib_headers.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,7 +21,7 @@ Description: Hack around improper use of private files of htslib</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -7,5 +7,5 @@ Name: libseqlib</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> Version: @VERSION@</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"> Description: C++ htslib/bwa-mem/fermi interface for interrogating sequence data</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> Libs: -L${libdir} -lseqlib -lfml -lbwa -lssw</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> Libs: -L${libdir} -lseqlib -lfml -lbwa -lssw<span class="idiff left right"> -lz</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-Cflags: -I${includedir}</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Cflags: -I${includedir} -I/usr/include/htslib</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"> </span></pre>
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