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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libsbml">Debian Med / libsbml</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libsbml/commit/94dca3c9acd6013993c649d4e28d0b34c81d25ca">94dca3c9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-18T19:47:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Work around javadoc issue with Java 9
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libsbml/commit/5cdf317e79882280eb998e5e66c52966d632107d">5cdf317e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-03-18T21:26:45+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#1b5f0255f425af2582e6980274e3cb076ede9a30">
<span class="new-file">
+
debian/patches/javadoc_java9.patch
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</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libsbml/compare/877f56a8b19c6c2f35f279cb2d2235d92689dbcf...5cdf317e79882280eb998e5e66c52966d632107d#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">libsbml</span> <span class="p">(</span><span class="m" style="color: #099;">5.16.0</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Work</span> <span class="n" style="color: #333;">around</span> <span class="n" style="color: #333;">javadoc</span> <span class="n" style="color: #333;">issue</span> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">Java</span> <span class="m" style="color: #099;">9</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">893298</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Sun</span><span class="p">,</span> <span class="m" style="color: #099;">18</span> <span class="n" style="color: #333;">Mar</span> <span class="m" style="color: #099;">2018</span> <span class="m" style="color: #099;">19</span><span class="p">:</span><span class="m" style="color: #099;">49</span><span class="p">:</span><span class="m" style="color: #099;">01</span> <span class="p">+</span><span class="m" style="color: #099;">0100</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="n" style="color: #333;">libsbml</span> <span class="p">(</span><span class="m" style="color: #099;">5.16.0</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">New</span> <span class="n" style="color: #333;">upstream</span> <span class="k" style="font-weight: 600;">version</span></span>
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<li id="1b5f0255f425af2582e6980274e3cb076ede9a30">
<a href="https://salsa.debian.org/med-team/libsbml/compare/877f56a8b19c6c2f35f279cb2d2235d92689dbcf...5cdf317e79882280eb998e5e66c52966d632107d#1b5f0255f425af2582e6980274e3cb076ede9a30"><strong>debian/patches/javadoc_java9.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Work around javadoc issue with Java 9</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> See https://lists.debian.org/debian-java/2018/03/msg00023.html</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/893298</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Author: Markus Koschany <apo@debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">Last-Update: Sun, 18 Mar 2018 19:39:40 +0100</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/docs/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/docs/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -208,10 +208,6 @@ if (WITH_JAVA)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> endif()</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> set(Java_JAVADOC_JAR ${Java_JAVADOC_JAR} CACHE FILEPATH "Location of javadoc jar")</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if (NOT EXISTS "${Java_JAVADOC_JAR}")</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- message(FATAL_ERROR "Cannot generate java documentation, please specify the Java_JAVADOC_JAR.")</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- endif()</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> set(LIBSBML_JAVA_DIR "${CMAKE_CURRENT_BINARY_DIR}/../src/bindings/java/java-files")</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> set(LIBSBML_JAVADOC_DOCTITLE "${PACKAGE_NAME} ${PACKAGE_VERSION} Java API Reference")</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> set(LIBSBML_JAVADOC_HEADER "<B>${PACKAGE_NAME}<BR>${PACKAGE_VERSION}</B>")</span></pre>
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<a href="https://salsa.debian.org/med-team/libsbml/compare/877f56a8b19c6c2f35f279cb2d2235d92689dbcf...5cdf317e79882280eb998e5e66c52966d632107d#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ spelling.patch</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">swig-3.x.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">mips-compile-with-O1.patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"># fix_cmake.patch # just warnings - ignore</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">javadoc_java9.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/libsbml/compare/877f56a8b19c6c2f35f279cb2d2235d92689dbcf...5cdf317e79882280eb998e5e66c52966d632107d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,9 +21,6 @@ endif</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"><span class="nv" style="color: teal;">JDK_PATH</span><span class="o" style="font-weight: 600;">:=</span><span class="nf" style="color: #900; font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">shell</span> readlink <span class="nt" style="color: navy;">-f</span> /usr/bin/javac | sed <span class="s2" style="color: #d14;">"s:/bin/javac::"</span><span class="nv" style="color: teal;">)</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"><span class="nv" style="color: teal;">JAVA_INCLUDE_PATH</span><span class="o" style="font-weight: 600;">:=</span><span class="nv" style="color: teal;">$(JDK_PATH)</span>/include</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="make"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># This is the path to the javadoc jar, which doc/CMakeLists.txt doesn't find</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="make"><span class="nv" style="color: teal;">CMAKE_OPTS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: navy;">-DJava_JAVADOC_JAR</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$(JDK_PATH)</span>/lib/tools.jar <span class="nt" style="color: navy;">-DJAVA_INCLUDE_PATH</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$(JAVA_INCLUDE_PATH)</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">ifneq</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">(,$(filter</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(DEB_HOST_ARCH),</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">mips</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">mipsel))</span></span>
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28
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="nv" style="color: teal;">CMAKE_OPTS</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: navy;">-D</span><span class="s1" style="color: #d14;">'WITH_01_COMPILE:BOOL=ON'</span></span>
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29
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="make"><span class="err" style="color: #a61717; background-color: #e3d2d2;">endif</span></span>
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