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<h3>
Aaron Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-tools6">Debian Med / ncbi-tools6</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/2a33cd2aaff06d692b67bb093873a0cdb2448e0b">2a33cd2a</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2018-03-25T21:24:05-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/source: Populate to accommodate binary test data.
* debian/source/format: Set to 3.0 (quilt).
* debian/source/include-binaries: List debian/tests/test-data/nc0305.aso.gz.
* debian/source/options: single-debian-patch (tracking changes purely
with git for now).
* debian/source/patch-header: "Combined patches from git."
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/48f368cbae4c19629394db7392f7a99ba92e73de">48f368cb</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2018-03-25T21:24:59-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Commit Debian 3.0 (quilt) metadata
[dgit (4.3) quilt-fixup]
</pre>
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<h4>7 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#df84ab942da3c19ccd0c325e6867ace0e2b86f99">
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debian/patches/debian-changes
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debian/patches/series
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debian/source/format
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debian/source/include-binaries
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debian/source/options
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debian/source/patch-header
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">tools6</span> <span class="p">(</span><span class="m" style="color: #099;">6.1.20170106</span><span class="p">-</span><span class="m" style="color: #099;">3</span><span class="p">)</span> <span class="n" style="color: #333;">UNRELEASED</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Liubov</span> <span class="n" style="color: #333;">Chuprikova</span> <span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Added</span> <span class="n" style="color: #333;">autopkgtest</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">part</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">tools</span><span class="p">-</span><span class="n" style="color: #333;">bin</span><span class="p">.</span> </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line old" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Liubov</span> <span class="n" style="color: #333;">Chuprikova</span> <span class="p"><</span><span class="n" style="color: #333;">chuprikovalv</span><span class="p">@</span><span class="n" style="color: #333;">gmail</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">></span> <span class="n" style="color: #333;">Fri</span><span class="p">,</span> <span class="m" style="color: #099;">23</span> <span class="n" style="color: #333;">Mar</span> <span class="m" style="color: #099;">2018</span> <span class="m" style="color: #099;">22</span><span class="p">:</span><span class="m" style="color: #099;">20</span><span class="p">:</span><span class="m" style="color: #099;">21</span> <span class="p">+</span><span class="m" style="color: #099;">0000</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Aaron</span> <span class="n" style="color: #333;">M</span><span class="p">.</span> <span class="n" style="color: #333;">Ucko</span> <span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">source</span><span class="p">/</span><span class="n" style="color: #333;">format</span><span class="p">:</span> <span class="k" style="font-weight: 600;">Set</span> <span class="k" style="font-weight: 600;">to</span> <span class="m" style="color: #099;">3.0</span> <span class="p">(</span><span class="n" style="color: #333;">quilt</span><span class="p">)</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">accommodate</span> <span class="n" style="color: #333;">binary</span> <span class="n" style="color: #333;">test</span> <span class="n" style="color: #333;">data</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">source</span><span class="p">/</span><span class="k" style="font-weight: 600;">include</span><span class="p">-</span><span class="n" style="color: #333;">binaries</span><span class="p">:</span> <span class="k" style="font-weight: 600;">List</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">tests</span><span class="p">/</span><span class="n" style="color: #333;">test</span><span class="p">-</span><span class="n" style="color: #333;">data</span><span class="p">/</span><span class="n" style="color: #333;">nc0305</span><span class="p">.</span><span class="n" style="color: #333;">aso</span><span class="p">.</span><span class="n" style="color: #333;">gz</span><span class="p">.</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">source</span><span class="p">/</span><span class="k" style="font-weight: 600;">options</span><span class="p">:</span> <span class="n" style="color: #333;">single</span><span class="p">-</span><span class="n" style="color: #333;">debian</span><span class="p">-</span><span class="n" style="color: #333;">patch</span> <span class="p">(</span><span class="n" style="color: #333;">tracking</span> <span class="n" style="color: #333;">changes</span> <span class="n" style="color: #333;">purely</span></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">with</span> <span class="n" style="color: #333;">git</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">now</span><span class="p">).</span></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">source</span><span class="p">/</span><span class="n" style="color: #333;">patch</span><span class="p">-</span><span class="n" style="color: #333;">header</span><span class="p">:</span> <span class="s2" style="color: #d14;">"Combined patches from git."</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Aaron</span> <span class="n" style="color: #333;">M</span><span class="p">.</span> <span class="n" style="color: #333;">Ucko</span> <span class="p"><</span><span class="n" style="color: #333;">ucko</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Sun</span><span class="p">,</span> <span class="m" style="color: #099;">25</span> <span class="n" style="color: #333;">Mar</span> <span class="m" style="color: #099;">2018</span> <span class="m" style="color: #099;">20</span><span class="p">:</span><span class="m" style="color: #099;">59</span><span class="p">:</span><span class="m" style="color: #099;">34</span> <span class="p">-</span><span class="m" style="color: #099;">0400</span></span>
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7
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"></span>
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8
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="mosel"><span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">tools6</span> <span class="p">(</span><span class="m" style="color: #099;">6.1.20170106</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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9
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="mosel"></span>
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<li id="df84ab942da3c19ccd0c325e6867ace0e2b86f99">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#df84ab942da3c19ccd0c325e6867ace0e2b86f99"><strong>debian/patches/debian-changes</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Combined patches from git.</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">--- /dev/null</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/.gitignore</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">@@ -0,0 +1,6 @@</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">+bin</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">+build</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">+include</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">+lib</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">+shlib</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">+*-stamp</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/access/ent2api.c</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/access/ent2api.c</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">@@ -1273,7 +1273,7 @@ NLM_EXTERN CONN EntrezOpenConnection (</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> *arg = '\0';</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> return QUERY_OpenServiceQueryEx</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">- (StringHasNoText (e2_service) ? "Entrez2" : e2_service, NULL, 30, arg);</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">+ (StringHasNoText (e2_service) ? "Entrez2s" : e2_service, NULL, 30, arg);</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> }</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> #ifdef OS_MAC</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/api/sqnutil3.c</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/api/sqnutil3.c</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">@@ -33198,7 +33198,7 @@ ClickableItemPtr LIBCALL ClickableGlobal</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> cip->clickable_item_type = item_type;</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> cip->description </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> = (CharPtr) MemNew ( sizeof (Char) * (StringLen (fmt) + 15));</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">- sprintf (cip->description, fmt);</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">+ strcpy (cip->description, fmt);</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> return cip;</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> }</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> return NULL;</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_gnutls.c</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/connect/ncbi_gnutls.c</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">@@ -585,6 +585,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> assert(!s_GnuTlsCredAnon);</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext">+#if 0</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> version = gnutls_check_version(0);</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> if (strcasecmp(GNUTLS_VERSION, version) != 0) {</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> CORE_LOGF(eLOG_Critical,</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext">@@ -592,6 +593,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> GNUTLS_VERSION, version));</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> assert(0);</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> }</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">+#endif</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> </span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> val = ConnNetInfo_GetValue(0, "GNUTLS_LOGLEVEL", buf, sizeof(buf), 0);</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> CORE_LOCK_READ;</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_http_connector.c</span>
</pre>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/connect/ncbi_http_connector.c</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">@@ -240,8 +240,14 @@ static int/*bool*/ x_UnsafeRedirectOK(SH</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> if (uuu->unsafe_redir == eDefault) {</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> if (!(uuu->flags & fHTTP_UnsafeRedirects)) {</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> char val[32];</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">+ const char* dflt = NULL;</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">+ if (uuu->net_info->scheme == eURL_Https</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">+ && (strspn(uuu->net_info->host, "0123456789.")</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext">+ == strlen(uuu->net_info->host))) {</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext">+ dflt = "TRUE";</span>
</pre>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">+ }</span>
</pre>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> ConnNetInfo_GetValue(0, "HTTP_UNSAFE_REDIRECTS",</span>
</pre>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">- val, sizeof(val), 0);</span>
</pre>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">+ val, sizeof(val), dflt);</span>
</pre>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> uuu->unsafe_redir = ConnNetInfo_Boolean(val) ? eOn : eOff;</span>
</pre>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> } else</span>
</pre>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> uuu->unsafe_redir = eOn;</span>
</pre>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_util.c</span>
</pre>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/connect/ncbi_util.c</span>
</pre>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext">@@ -49,7 +49,9 @@</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> # ifndef NCBI_OS_SOLARIS</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> # include <limits.h></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> # endif /*!NCBI_OS_SOLARIS*/</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext">-# ifdef NCBI_OS_LINUX</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext">+# ifdef __MACH__</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext">+# include <mach/vm_param.h></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">+# elif defined(NCBI_OS_LINUX)</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> # include <sys/user.h></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> # endif /*NCBI_OS_LINUX*/</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> # include <pwd.h></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/connect/urlquery.c</span>
</pre>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/connect/urlquery.c</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext">@@ -128,7 +128,10 @@ NLM_EXTERN CONN QUERY_OpenUrlQuery (</span>
</pre>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> }</span>
</pre>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> if ( host_port ) {</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> net_info->port = host_port;</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext">+ } else {</span>
</pre>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext">+ net_info->scheme = eURL_Https;</span>
</pre>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> }</span>
</pre>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext">+</span>
</pre>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> StringNCpy_0 (net_info->path, host_path, sizeof (net_info->path));</span>
</pre>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> if (StringDoesHaveText (arguments)) {</span>
</pre>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> StringNCpy_0 (net_info->args, arguments, sizeof (net_info->args));</span>
</pre>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/corelib/ncbimain.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/corelib/ncbimain.c</span>
</pre>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">@@ -67,6 +67,7 @@</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> #pragma segment NlmSegA</span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> #endif</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> </span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">+extern Nlm_Int2 Nlm_Main(void) __attribute__((weak));</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> </span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> /*****************************************************************************</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> *</span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext">@@ -95,7 +96,12 @@ main(int argc, char *argv[])</span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> /* Initialize connection library's logger, registry and lock */</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> CONNECT_Init(0);</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext">- retval = Nlm_Main();</span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext">+ if (Nlm_Main) {</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext">+ retval = Nlm_Main();</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext">+ } else {</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext">+ ErrPost(0, 0, "Neither main nor Nlm_Main defined by program.");</span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext">+ retval = -1;</span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext">+ }</span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> </span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> NlmThreadJoinAll();</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> </span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/corelib/ncbitime.c</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/corelib/ncbitime.c</span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext">@@ -77,6 +77,7 @@</span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> #include <ncbi.h></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> #include <ncbithr.h></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> #include <ncbiwin.h></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext">+#include <stdlib.h></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> </span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> #ifdef OS_UNIX</span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> #include <sys/times.h></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">@@ -108,8 +109,18 @@ NLM_EXTERN time_t LIBCALL Nlm_GetSecs (</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> *****************************************************************************/</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetDayTime (Nlm_DayTimePtr dtp)</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> {</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext">+ /* This function honors the SOURCE_DATE_EPOCH specificatin</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext">+ (https://reproducible-builds.org/specs/source-date-epoch/) */</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">+ const char *sde = getenv("SOURCE_DATE_EPOCH");</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> #if (defined(SOLARIS_THREADS_AVAIL) || defined(POSIX_THREADS_AVAIL) || defined(WIN32)) && !defined(OS_UNIX_DARWIN)</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext">- time_t t = time( NULL );</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">+ time_t t;</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext">+ if (sde) {</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext">+ t = strtoul(sde, NULL, 0);</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext">+ if (t == 0)</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext">+ return FALSE;</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext">+ } else {</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext">+ t = time( NULL );</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext">+ }</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> #ifdef WIN32</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> static TNlmMutex localtime_lock;</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> if (NlmMutexLockEx( &localtime_lock ) != 0)</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext">@@ -125,7 +136,13 @@ NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetD</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> time_t ltime;</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> struct tm *dt;</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> Nlm_MemFill ((Nlm_VoidPtr) dtp, 0, sizeof(Nlm_DayTime));</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext">- time(<ime);</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext">+ if (sde) {</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext">+ ltime = strtoul(sde, NULL, 0);</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">+ if (ltime == 0)</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">+ return FALSE;</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">+ } else {</span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">+ time(<ime);</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext">+ }</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> if ((dt = localtime (<ime)) != NULL)</span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> {</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> Nlm_MemCopy ((Nlm_VoidPtr) dtp, (Nlm_VoidPtr) dt, sizeof (struct tm));</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/asndisc.c</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/asndisc.c</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext">@@ -65,6 +65,7 @@</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> #include <objmacro.h></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> #include <macroapi.h></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext">+#include <connect/ncbi_gnutls.h></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> </span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> #define ASNDISC_APP_VER "2.3"</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> </span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext">@@ -1264,6 +1265,8 @@ Int2 Main (void)</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> UseLocalAsnloadDataAndErrMsg ();</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> ErrPathReset ();</span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> </span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext">+ SOCK_SetupSSL(NcbiSetupGnuTls);</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext">+</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> if (! AllObjLoad ()) {</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> Message (MSG_FATAL, "AllObjLoad failed");</span>
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> return 1;</span>
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/entrez2.c</span>
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/entrez2.c</span>
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">@@ -61,6 +61,8 @@</span>
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> #include <entrez2.h></span>
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext">+#include <connect/ncbi_gnutls.h></span>
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">+</span>
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> #define ENTREZ_APP_VERSION "12.1"</span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> #define MAX_QUERY_FORMS 256</span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext">@@ -884,6 +886,8 @@ Int2 Main (void)</span>
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> UseLocalAsnloadDataAndErrMsg ();</span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> ErrPathReset ();</span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext">+ SOCK_SetupSSL(NcbiSetupGnuTls);</span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">+</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> /*--------------------------------*/</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> /* Initialize the global settings */</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> /*--------------------------------*/</span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext">@@ -1026,7 +1030,7 @@ Int2 Main (void)</span>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> /*--------------------------------------*/</span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> if (useNormalServ) {</span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext">- EntrezSetService ("Entrez2");</span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext">+ EntrezSetService ("Entrez2s");</span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> } else if (useTestServ) {</span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> EntrezSetService ("Entrez2Test");</span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> } else if (useURL) {</span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/gbseqget.c</span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/gbseqget.c</span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext">@@ -54,6 +54,8 @@</span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> #include <pmfapi.h></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> #include <asn2gnbp.h></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext">+#include <connect/ncbi_gnutls.h></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext">+</span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> static CharPtr ReadALine (</span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> CharPtr str,</span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> size_t size,</span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext">@@ -417,6 +419,8 @@ Int2 Main (void)</span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> UseLocalAsnloadDataAndErrMsg ();</span>
</pre>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> ErrPathReset ();</span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> </span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext">+ SOCK_SetupSSL(NcbiSetupGnuTls);</span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext">+</span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> if (! AllObjLoad ()) {</span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> Message (MSG_FATAL, "AllObjLoad failed");</span>
</pre>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> return 1;</span>
</pre>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/insdseqget.c</span>
</pre>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/insdseqget.c</span>
</pre>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext">@@ -55,6 +55,8 @@</span>
</pre>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> #include <pmfapi.h></span>
</pre>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> #include <asn2gnbp.h></span>
</pre>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> </span>
</pre>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">+#include <connect/ncbi_gnutls.h></span>
</pre>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">+</span>
</pre>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> #define INSDSEQGET_APP_VER "1.1"</span>
</pre>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> </span>
</pre>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> CharPtr INSDSEQGET_APPLICATION = INSDSEQGET_APP_VER;</span>
</pre>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">@@ -423,6 +425,8 @@ Int2 Main (void)</span>
</pre>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> UseLocalAsnloadDataAndErrMsg ();</span>
</pre>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> ErrPathReset ();</span>
</pre>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> </span>
</pre>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext">+ SOCK_SetupSSL(NcbiSetupGnuTls);</span>
</pre>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">+</span>
</pre>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"> if (! AllObjLoad ()) {</span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> Message (MSG_FATAL, "AllObjLoad failed");</span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"> return 1;</span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/nps2gps.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/nps2gps.c</span>
</pre>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext">@@ -50,6 +50,8 @@</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> #include <toasn3.h></span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> #include <pmfapi.h></span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext">+#include <connect/ncbi_gnutls.h></span>
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext">+</span>
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> #define NPS2GPSAPP_VER "3.6"</span>
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> CharPtr NPS2GPSAPPLICATION = NPS2GPSAPP_VER;</span>
</pre>
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext">@@ -2439,6 +2441,8 @@ Int2 Main (void)</span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> UseLocalAsnloadDataAndErrMsg ();</span>
</pre>
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> ErrPathReset ();</span>
</pre>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext">+ SOCK_SetupSSL(NcbiSetupGnuTls);</span>
</pre>
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext">+</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> if (! AllObjLoad ()) {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> Message (MSG_FATAL, "AllObjLoad failed");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> return 1;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/demo/tbl2asn.c</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/demo/tbl2asn.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext">@@ -8911,10 +8911,12 @@ Int2 Main (void)</span>
</pre>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> return 1;</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> }</span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> </span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext">+ /*</span>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> if (MoreThanYearOld ()) {</span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> too_old = TRUE;</span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please download the current version.");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> }</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext">+ */</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> /* process command line arguments */</span>
</pre>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> </span>
</pre>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext">@@ -9668,6 +9670,9 @@ Int2 Main (void)</span>
</pre>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> }</span>
</pre>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> </span>
</pre>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> if (tbl.other_failure) {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
291
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext">+ if (MoreThanYearOld ()) {</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext">+ Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please try again with the current version.");</span>
</pre>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext">+ }</span>
</pre>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> return 1;</span>
</pre>
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295
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"> }</span>
</pre>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/desktop/bspview.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/desktop/bspview.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext">@@ -2549,13 +2549,13 @@ NLM_EXTERN void Nlm_LaunchWebPage (Char</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"> }</span>
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> #endif</span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext"> #ifdef WIN_MOTIF</span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext">- argv [0] = "netscape";</span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext">+ argv [0] = "sensible-browser";</span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"> argv [1] = url;</span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"> argv [2] = NULL;</span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> child = fork();</span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext"> if(child == 0) {</span>
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext">- if (execvp ("netscape", argv) == -1) {</span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext">- Message (MSG_POST, "Unable to launch netscape");</span>
</pre>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext">+ if (execvp ("sensible-browser", argv) == -1) {</span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext">+ Message (MSG_POST, "Unable to launch browser");</span>
</pre>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"> exit(-1);</span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext"> }</span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"> }</span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/doc/firewall.html</span>
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/doc/firewall.html</span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext">@@ -133,7 +133,7 @@ in case the public access will eventuall</span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext"> <p></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext"> To see what ports are currently on, and their status, as reported within</span>
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<td class="diff-line-num new new_line" data-linenumber="322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">-NCBI, please refer to the following <a href="fwd_check.cgi">Firewall Daemon Presence</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">+NCBI, please refer to the following <a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext"> Check</a> page. Ports marked <b>INTERNAL</b> are solely for NCBI own use, and may be</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"> inaccessible from your site. That, however, does not affect availability of any</span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext"> services that NCBI provides through other (open) firewall ports.</span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext">@@ -143,7 +143,7 @@ TROUBLESHOOTING: You can test whether t</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"> your host just by running simple <tt>telnet</tt> command (available on most</span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> current systems). To know which ports, at the moment, you should be trying</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext"> from the list above (see the "Ports to open"), first check their status by visiting</span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext">-<a href="fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any</span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext">+<a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any</span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext"> up-and-running port and do the following (the example assumes port 5861 has</span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext"> been shown in operational state):</span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext"> <pre></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext">@@ -175,7 +175,7 @@ functions of NCBI dispatching facilities</span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext"> <p></span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext"> There is also an auxiliary automated UNIX shell script</span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext">-<a href="fwd_check.sh">fwd_check.sh</a> to check all of</span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext">+<a href="../libncbi6/examples/fwd_check.sh">fwd_check.sh</a> to check all of</span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"> the preset ports, and it is kept in-sync with currently</span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"> configured open ports (so remember to refresh your download</span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"> prior to actual use).</span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/doc/fwd_check.sh</span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/doc/fwd_check.sh</span>
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext">@@ -8,7 +8,7 @@</span>
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"> delay_sec="$1"</span>
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"> delay_sec=${delay_sec:="10"}</span>
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"> netcat="`which nc 2>/dev/null`"</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext">-temp="/tmp/`basename $0`.$$.tmp"</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext">+temp=`mktemp`</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"> helper="./fwd_failure_helper.exe"</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> test -z "$netcat" && netcat="`whereis nc | sed 's/^[^:]*://;s/ //g'`"</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"> test -z "$HTTP_NCBI_EXTERNAL" && HTTP_CAF_EXTERNAL="$HTTP_NCBI_EXTERNAL"</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/doc/man/cleanasn.1</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/doc/man/cleanasn.1</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext">-.TH CLEANASN 1 2016-09-01 NCBI "NCBI Tools User's Manual"</span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext">+.TH CLEANASN 1 2017-01-09 NCBI "NCBI Tools User's Manual"</span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> .SH NAME</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"> cleanasn \- clean up irregularities in NCBI ASN.1 objects</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext"> .SH SYNOPSIS</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext">@@ -75,6 +75,10 @@ Exclude nuc\-prot sets</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> Only segmented sequences</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> .IP w</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"> Exclude segmented sequences</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext">+.IP x</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext">+Only segmented proteins</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext">+.IP y</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext">+Exclude segmented proteins</span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> .PD</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> .RE</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> .TP</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext">@@ -86,6 +90,8 @@ Sequence operations, per the flags in st</span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> Compress</span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> .IP d</span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"> Decompress</span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext">+.IP l</span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext">+Recalculated segmented sequence length</span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"> .IP v</span>
</pre>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> Virtual gaps inside segmented sequence</span>
</pre>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> .IP s</span>
</pre>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext">--- /dev/null</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/doc/man/taxblast.1</span>
</pre>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext">@@ -0,0 +1,31 @@</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext">+.TH TAXBLAST 1 2016-12-05 NCBI "NCBI Tools User's Manual"</span>
</pre>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext">+.SH NAME</span>
</pre>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">+taxblast \- annotate BLAST output with taxonomic details</span>
</pre>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext">+.SH SYNOPSIS</span>
</pre>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext">+.B taxblast</span>
</pre>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext">+[\|\fB\-\fP\|]</span>
</pre>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext">+[\|\fB\-d\fP\ \fIstr\fP\|]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext">+\fB\-i\fP\ \fIfilename\fP</span>
</pre>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">+[\|\fB\-o\fP\ \fIfilename\fP\|]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext">+[\|\fB\-p\fP\|]</span>
</pre>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext">+.SH DESCRIPTION</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext">+\fBtaxblast\fP annotates BLAST output with taxonomic details.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext">+.SH OPTIONS</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext">+A summary of options is included below.</span>
</pre>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext">+.TP</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
402
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext">+\fB\-\fP</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext">+Print usage message</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
404
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext">+.TP</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
405
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext">+\fB\-d\fP\ \fIstr\fP</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
406
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext">+Database used to get SeqAnnot ASN.1 (\fBnr\fP by default)</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
407
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext">+.TP</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
408
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext">+\fB\-i\fP\ \fIfilename\fP</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
409
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext">+Input ASN.1 File (SeqAnnot)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
410
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext">+.TP</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
411
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext">+\fB\-o\fP\ \fIfilename\fP</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
412
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext">+Output file name (stdout by default)</span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
413
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext">+.TP</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
414
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext">+\fB\-p\fP</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
415
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext">+Sequence is DNA</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
416
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext">+.SH AUTHOR</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext">+The National Center for Biotechnology Information.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
418
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/make/makeall.unx</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
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<td class="diff-line-num new new_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
419
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/make/makeall.unx</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
421
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext">-# makefile for asntool and ncbi core routines,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
422
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext">+# -*- makefile -*- for asntool and ncbi core routines,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext"> #</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext"> # $Id: makeall.unx,v 6.321 2016/12/31 22:35:10 ucko Exp $</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
425
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext"> #</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
426
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext">@@ -234,7 +234,7 @@ SRC20 = drawseq.c dotmatrx.c fea2seg.c f</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext"> dlgutil1.c dlgutil2.c e2trmlst.c e2docsum.c asn2graphic.c \</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"> medview.c bspview.c gbfview.c gphview.c gphdraw.c gxydraw.c gtrdraw.c \</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> seqpanel.c ingengraph.c ingenext.c ingenwin.c macrodlg.c \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext">- biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c salogif.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext">+ biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c</span>
</pre>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext"> SRC45 = ddvclick.c ddvgraph.c ddvopen.c ddvpanel.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext">@@ -392,7 +392,7 @@ OBJ20 = drawseq.o dotmatrx.o fea2seg.o f</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"> dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o \</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o \</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext"> seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o \</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext">- biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o</span>
</pre>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext">+ biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o</span>
</pre>
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</tr>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="plaintext"> OBJ45 = ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o</span>
</pre>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext"> </span>
</pre>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext">@@ -491,14 +491,14 @@ ln-if-absent: ../make/ln-if-absent</span>
</pre>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"> nocopy : sources $(THR_OBJ) $(LIB1) $(LIBTLS) $(LIB2) $(LIB3) $(DLIB4) $(DLIB400) \</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> $(LIB5) $(DLIB20) $(DLIB45) $(LIB22) $(LIB23) $(LIBCOMPADJ) \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"> $(DLIB28) $(DLIB30) $(DLIB3000) \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext">- $(DLIB34) $(DLIB37) $(DLIB38) $(LIB50) $(LIB60) $(LIB61) $(NCBI_SHLIBS)</span>
</pre>
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449
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext">+ $(DLIB34) $(DLIB37) $(DLIB38) $(LIB60) $(LIB61) $(NCBI_SHLIBS)</span>
</pre>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="plaintext"> </span>
</pre>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext"> sources : $(SRCALL)</span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"> </span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="plaintext"> ## To clean out the directory without removing make</span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext"> ##</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext"> clean :</span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext">- -rm -f *.[acho]</span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext">+ -rm -f *.[acho] *.glo</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext"> </span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext"> .NO_PARALLEL: copy $(ULIB4) $(ULIB30)</span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext"> </span>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext">@@ -656,10 +656,12 @@ shlib.sol :</span>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"> cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS)</span>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> rm -f ../shlib/*.a</span>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext"> </span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext">-#</span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext">-# Linux shared libs are built the same in the same manner as for SGI</span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext">-#</span>
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext">-shlib.lnx : shlib.sgi</span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext">+shlib.lnx :</span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext">+ -mkdir ../shlib</span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext">+ -rm -f ../shlib/*.a</span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext">+ ln $(NCBI_LIBDIR)/*.a ../shlib</span>
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext">+ cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o"</span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext">+ rm -f ../shlib/*.a</span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext"> </span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="plaintext"> shlib.sgi :</span>
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<td class="diff-line-num new new_line" data-linenumber="477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
477
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> -mkdir ../shlib</span>
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<td class="diff-line-num new new_line" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext">@@ -792,7 +794,7 @@ copy :</span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext"> cp -fp ../algo/blast/core/*.h ../include/algo/blast/core</span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext"> - mkdir -p ../include/algo/blast/composition_adjustment</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext"> $(SRCCOPY) ../algo/blast/composition_adjustment/*.c .</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext">- $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext">+# $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext"> cp -fp ../algo/blast/composition_adjustment/*.h \</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext"> ../include/algo/blast/composition_adjustment</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"> - mkdir -p ../include/algo/blast/api</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/make/makedemo.unx</span>
</pre>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/make/makedemo.unx</span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext">-# makefile for demo programs</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext">+# -*- makefile -*- for demo programs</span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> #</span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext"> # $Id: makedemo.unx,v 6.96 2016/08/31 19:05:26 ucko Exp $</span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext"> #</span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/make/makenet.unx</span>
</pre>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/make/makenet.unx</span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext">-# makefile for network demo programs and network entrez</span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="plaintext">+# -*- makefile -*- for network demo programs and network entrez</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext"> #</span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext"> # $Id: makenet.unx,v 6.261 2016/08/25 15:37:04 ucko Exp $</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext"> # test, ignore</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext">@@ -330,6 +330,8 @@ OBJ46 = id2.o id2sgen.o</span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext"> </span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext"> # objects & sources needed for versions of network demo programs</span>
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506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="plaintext"> </span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext">+OBJCN3D = cn3dmain.o</span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext">+</span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext"> OBJDDV = ddvmain.o</span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext"> </span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext"> OBJUDV = udvmain.o</span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext">@@ -445,10 +447,12 @@ shlib.sol :</span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS)</span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext"> rm -f ../shlib/*.a</span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext"> </span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext">-#</span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext">-# Linux shared libs are built the same in the same manner as for SGI</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext">-#</span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext">-shlib.lnx : shlib.sgi</span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext">+shlib.lnx :</span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="plaintext">+ -mkdir ../shlib</span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext">+ -rm -f ../shlib/*.a</span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext">+ ln $(NCBI_LIBDIR)/*.a ../shlib</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext">+ cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o"</span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext">+ rm -f ../shlib/*.a</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext"> </span>
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<td class="diff-line-num new new_line" data-linenumber="527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext"> shlib.sgi :</span>
</pre>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext"> -mkdir ../shlib</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext">@@ -518,7 +522,7 @@ copy :</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext"> $(SRCCOPY) ../network/vibnet/*.h ../include</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext"> $(SRCCOPY) ../cdromlib/*.h ../include</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext"> -$(SRCCOPY) ../network/wwwblast/Src/*.c .</span>
</pre>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext">- -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include</span>
</pre>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext">+# -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include</span>
</pre>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"> $(SRCCOPY) ../cdromlib/accentr.c .</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> $(SRCCOPY) ../cdromlib/accutils.c .</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext"> -$(SRCCOPY) ../sequin/*.* .</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext">@@ -952,6 +956,11 @@ accvdb.o : accvdb.c</span>
</pre>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"> ##</span>
</pre>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> </span>
</pre>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="plaintext"> </span>
</pre>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="plaintext">+Cn3D : $(OBJCN3D) $(BENTREZLIBS) netentcf $(BLIB36)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="plaintext">+ $(CC) -o Cn3D $(LDFLAGS) $(OBJCN3D) $(LIB31) $(LIB3000) $(LIB20) \</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="plaintext">+ $(LIB45) $(LIB22) $(LIB8) $(LIB7) \</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="plaintext">+ $(LIB400) $(LIB2) $(LIB1) $(VIBLIBS) $(OGLLIBS)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="plaintext">+</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="plaintext"> ddv : $(OBJDDV)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="548" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
548
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC548" class="line" lang="plaintext"> $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="plaintext"> $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="plaintext">@@ -1097,8 +1106,8 @@ asnval_dbx_psf.o : asnval.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="plaintext"> # asndisc program (asndisc)</span>
</pre>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="plaintext"> asndisc : asndisc.c</span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="plaintext"> $(CC) -g -o asndisc $(LDFLAGS) asndisc.c $(THREAD_OBJ) $(LIB41) \</span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="plaintext">- $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) \</span>
</pre>
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555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="plaintext">- $(OTHERLIBS) $(THREAD_OTHERLIBS)</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="plaintext">+ $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \</span>
</pre>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="plaintext">+ $(GNUTLS_LIBS) $(OTHERLIBS) $(THREAD_OTHERLIBS)</span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext"> </span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext"> # asndisc_psf, uses PUBSEQBioseqFetchEnable instead of PubSeqFetchEnable</span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="plaintext"> # should be used only internally within NCBI.</span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="plaintext">@@ -1150,17 +1159,19 @@ diffshift : diffshift.c</span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"> # gbseqget program (gbseqget)</span>
</pre>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="plaintext"> gbseqget : gbseqget.c</span>
</pre>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="plaintext"> $(CC) -g -o gbseqget $(LDFLAGS) gbseqget.c $(LIB41) $(NETCLILIB) \</span>
</pre>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext">- $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS)</span>
</pre>
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</tr>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext">+ $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \</span>
</pre>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext">+ $(GNUTLS_LIBS) $(OTHERLIBS)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext"> </span>
</pre>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"> # insdseqget program (insdseqget)</span>
</pre>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> insdseqget : insdseqget.c</span>
</pre>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext"> $(CC) -g -o insdseqget $(LDFLAGS) insdseqget.c $(LIB41) $(NETCLILIB) \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext">- $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS)</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="573" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext">+ $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext">+ $(GNUTLS_LIBS) $(OTHERLIBS)</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="576" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext"> # nps2gps program (nps2gps)</span>
</pre>
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577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext"> nps2gps : nps2gps.c</span>
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<td class="diff-line-num new new_line" data-linenumber="578" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"> $(CC) -g -o nps2gps $(LDFLAGS) nps2gps.c $(LIB23) $(LIBCOMPADJ) \</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext">- $(LIB2) $(LIB1) $(OTHERLIBS)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="580" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext">+ $(LIB2) $(LIBTLS) $(LIB1) $(GNUTLS_LIBS) $(OTHERLIBS)</span>
</pre>
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581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="plaintext"> </span>
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582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="plaintext"> # trna2sap program (trna2sap)</span>
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="plaintext"> trna2sap : trna2sap.c</span>
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext">@@ -1181,7 +1192,8 @@ testent2 : testent2.c</span>
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="plaintext"> entrez2 : entrez2.c</span>
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<td class="diff-line-num new new_line" data-linenumber="586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext"> $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="plaintext"> $(LIB61) $(LIB60) $(LIB22) $(LIB23) $(LIBCOMPADJ) \</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="588" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="plaintext">- $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS)</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext">+ $(LIB2) $(LIB4) $(LIBTLS) $(LIB1) \</span>
</pre>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext">+ $(GNUTLS_LIBS) $(VIBLIBS) $(OTHERLIBS)</span>
</pre>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> $(VIB_POST_LINK) entrez2</span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext"> </span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext"> # demo program (spidey)</span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/make/makeshlb.unx</span>
</pre>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/make/makeshlb.unx</span>
</pre>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext">@@ -1,4 +1,4 @@</span>
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597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext">-#</span>
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598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext">+# -*- makefile -*-</span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"> #</span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> # $Id: makeshlb.unx,v 6.1 1999/03/18 17:31:11 beloslyu Exp $</span>
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<td class="diff-line-num new new_line" data-linenumber="601" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"> #</span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext">@@ -12,7 +12,115 @@ SH1 = ld -G -o</span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext"> SH2 = `lorder *.o | tsort` $(NCBI_OTHERLIBS)</span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext"> </span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext"> %.so: %.a</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext">- rm -f *.o __*</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext">+ rm -f *.o *.glo __*</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext"> ar x $<</span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext">+ case $< in \</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext">+ *OGL.a) for f in *.glo; do mv $$f `basename $$f .glo`.o; done ;; \</span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="plaintext">+ esac</span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="plaintext"> $(SH1) $@ $(SH2)</span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext"> rm -f *.o __*</span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext">+</span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="plaintext">+so=so.$(NCBI_VERSION_MAJOR).$(NCBI_VERSION_MINOR)</span>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="plaintext">+</span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="plaintext">+%.$(so): %.a</span>
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618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="plaintext">+ $(CC) -shared -Wl,-soname=$*.so.$(NCBI_VERSION_MAJOR) -o $@ \</span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="plaintext">+ -Wl,--whole-archive $< -Wl,--no-whole-archive $(LDFLAGS) \</span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="plaintext">+ $($*_deps) $($*_sysdeps)</span>
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621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="plaintext">+</span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="plaintext">+%.so.$(NCBI_VERSION_MAJOR): %.$(so)</span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="plaintext">+ ln -s $< $@</span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="plaintext">+ ln -s $< $*.so</span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="plaintext">+</span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="plaintext">+# Make libncbiCacc and libncbiacc pointers to libncbiNacc, since it's</span>
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<td class="diff-line-num new new_line" data-linenumber="627" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
627
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC627" class="line" lang="plaintext">+# the most useful variant in the usual (net-only) case. Do the same</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
628
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC628" class="line" lang="plaintext">+# for libnetentr, and link the static version into libncbiNacc.so, due</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
629
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC629" class="line" lang="plaintext">+# to a circular dependency.</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
630
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC630" class="line" lang="plaintext">+libnetentr.$(so) libncbiCacc.$(so) libncbiacc.$(so):</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
631
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC631" class="line" lang="plaintext">+ ln -s libncbiNacc.$(so) $@</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="632" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
632
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC632" class="line" lang="plaintext">+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="633" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
633
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC633" class="line" lang="plaintext">+# Standardize on the OpenGL-enabled versions of Vibrant, since there's</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="634" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
634
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC634" class="line" lang="plaintext">+# no longer any real penalty in doing so.</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="635" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
635
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC635" class="line" lang="plaintext">+libvibrant.$(so):</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="636" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
636
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC636" class="line" lang="plaintext">+ ln -s libvibrantOGL.$(so) $@</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="637" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
637
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC637" class="line" lang="plaintext">+libncbicn3d.$(so):</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="638" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
638
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC638" class="line" lang="plaintext">+ ln -s libncbicn3dOGL.$(so) $@</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="639" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
639
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC639" class="line" lang="plaintext">+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="640" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
640
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC640" class="line" lang="plaintext">+libblast_deps = libblastcompadj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="641" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
641
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC641" class="line" lang="plaintext">+libblast_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="642" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
642
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC642" class="line" lang="plaintext">+libblastapi_deps = libblast.$(so) libncbitool.$(so) libncbiobj.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="643" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
643
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC643" class="line" lang="plaintext">+ libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="644" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
644
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC644" class="line" lang="plaintext">+libblastapi_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="645" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
645
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC645" class="line" lang="plaintext">+libblastcompadj_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="646" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
646
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC646" class="line" lang="plaintext">+libconnssl_deps = libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="647" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
647
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC647" class="line" lang="plaintext">+libconnssl_sysdeps = -lgnutls</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
648
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC648" class="line" lang="plaintext">+libncbi_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
649
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC649" class="line" lang="plaintext">+# libncbiCacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="650" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
650
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC650" class="line" lang="plaintext">+libncbiNacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="651" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
651
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC651" class="line" lang="plaintext">+ libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="652" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
652
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC652" class="line" lang="plaintext">+libncbiNacc_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="653" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
653
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC653" class="line" lang="plaintext">+# libncbiacc_deps = libncbicdr.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
654
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC654" class="line" lang="plaintext">+libncbicdr_deps = libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="655" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
655
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC655" class="line" lang="plaintext">+libncbiid1_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="656" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
656
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC656" class="line" lang="plaintext">+libncbimla_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="657" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
657
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC657" class="line" lang="plaintext">+libncbimmdb_deps = libncbiid1.$(so) libncbitool.$(so) libncbiobj.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="658" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
658
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC658" class="line" lang="plaintext">+ libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="659" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
659
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC659" class="line" lang="plaintext">+libncbimmdb_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="660" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
660
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC660" class="line" lang="plaintext">+libncbiobj_deps = libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="661" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
661
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC661" class="line" lang="plaintext">+libncbiobj_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="662" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
662
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC662" class="line" lang="plaintext">+libncbitool_deps = libblastcompadj.$(so) libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="663" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
663
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC663" class="line" lang="plaintext">+libncbitool_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="664" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
664
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC664" class="line" lang="plaintext">+libncbitxc2_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="665" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
665
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC665" class="line" lang="plaintext">+ libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="666" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
666
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC666" class="line" lang="plaintext">+libncbitxc2_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="667" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
667
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC667" class="line" lang="plaintext">+libnetblast_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="668" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
668
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC668" class="line" lang="plaintext">+ libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="669" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
669
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC669" class="line" lang="plaintext">+libnetcli_deps = libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="670" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
670
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC670" class="line" lang="plaintext">+# libnetentr_deps = libncbiacc.$(so) libnetcli.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
671
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC671" class="line" lang="plaintext">+libvibgif_deps = libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
672
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC672" class="line" lang="plaintext">+libvibgif_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
673
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC673" class="line" lang="plaintext">+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
674
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC674" class="line" lang="plaintext">+libddvlib_deps = libncbidesk.$(so) libvibrantOGL.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
675
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC675" class="line" lang="plaintext">+ libncbitool.$(so) libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
676
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC676" class="line" lang="plaintext">+libncbicn3d_deps = libncbiNacc.$(so) libddvlib.$(so) libncbidesk.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
677
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC677" class="line" lang="plaintext">+ libncbimmdb.$(so) libncbitool.$(so) libncbiobj.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="678" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
678
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC678" class="line" lang="plaintext">+ libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="679" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
679
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC679" class="line" lang="plaintext">+libncbicn3dOGL_deps = $(libncbicn3d_deps) libvibrantOGL.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="680" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
680
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC680" class="line" lang="plaintext">+libncbicn3dOGL_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
681
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC681" class="line" lang="plaintext">+libncbidesk_deps = libblastapi.$(so) libncbimmdb.$(so) libncbitool.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
682
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC682" class="line" lang="plaintext">+ libvibrantOGL.$(so) libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="683" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
683
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC683" class="line" lang="plaintext">+libncbidesk_sysdeps = -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
684
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC684" class="line" lang="plaintext">+libvibnet_deps = libncbiNacc.$(so) libncbidesk.$(so) libncbimmdb.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
685
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC685" class="line" lang="plaintext">+ libvibrantOGL.$(so) libncbitool.$(so) \</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="686" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
686
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC686" class="line" lang="plaintext">+ libncbicdr.$(so) libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="687" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
687
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC687" class="line" lang="plaintext">+# libvibrant_deps = libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="688" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
688
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC688" class="line" lang="plaintext">+# libvibrant_sysdeps = $(VIBLIBS)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="689" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
689
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC689" class="line" lang="plaintext">+# for ddvcolor stuff</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="690" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
690
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC690" class="line" lang="plaintext">+libvibrantOGL_deps = libncbiobj.$(so) libncbi.$(so)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="691" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
691
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC691" class="line" lang="plaintext">+libvibrantOGL_sysdeps = $(OGLLIBS) $(VIBLIBS) -lm</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="692" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
692
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC692" class="line" lang="plaintext">+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="693" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
693
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC693" class="line" lang="plaintext">+# XXX - is there a way to express these programmatically?</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="694" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
694
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC694" class="line" lang="plaintext">+libblast.$(so): $(libblast_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="695" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
695
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC695" class="line" lang="plaintext">+libblastapi.$(so): $(libblastapi_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="696" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
696
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC696" class="line" lang="plaintext">+libconnssl.$(so): $(libconnssl_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
697
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC697" class="line" lang="plaintext">+# libncbiCacc.$(so): $(libncbiCacc_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
698
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC698" class="line" lang="plaintext">+libncbiNacc.$(so): $(libncbiNacc_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
699
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC699" class="line" lang="plaintext">+# libncbiacc.$(so): $(libncbiacc_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="700" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
700
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC700" class="line" lang="plaintext">+libncbicdr.$(so): $(libncbicdr_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
701
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC701" class="line" lang="plaintext">+libncbiid1.$(so): $(libncbiid1_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
702
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC702" class="line" lang="plaintext">+libncbimla.$(so): $(libncbimla_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
703
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC703" class="line" lang="plaintext">+libncbimmdb.$(so): $(libncbimmdb_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="704" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
704
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC704" class="line" lang="plaintext">+libncbiobj.$(so): $(libncbiobj_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
705
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC705" class="line" lang="plaintext">+libncbitool.$(so): $(libncbitool_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="706" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
706
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC706" class="line" lang="plaintext">+libncbitxc2.$(so): $(libncbitxc2_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
707
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC707" class="line" lang="plaintext">+libnetblast.$(so): $(libnetblast_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="708" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
708
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC708" class="line" lang="plaintext">+libnetcli.$(so): $(libnetcli_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="709" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
709
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC709" class="line" lang="plaintext">+# libnetentr.$(so): $(libnetentr_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="710" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
710
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC710" class="line" lang="plaintext">+</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="711" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
711
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC711" class="line" lang="plaintext">+libddvlib.$(so): $(libddvlib_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="712" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
712
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC712" class="line" lang="plaintext">+# libncbicn3d.$(so): $(libncbicn3d_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="713" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
713
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC713" class="line" lang="plaintext">+libncbicn3dOGL.$(so): $(libncbicn3dOGL_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
714
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC714" class="line" lang="plaintext">+libncbidesk.$(so): $(libncbidesk_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="715" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
715
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC715" class="line" lang="plaintext">+libvibgif.$(so): $(libvibgif_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
716
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC716" class="line" lang="plaintext">+libvibnet.$(so): $(libvibnet_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
717
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC717" class="line" lang="plaintext">+# libvibrant.$(so): $(libvibrant_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="718" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
718
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC718" class="line" lang="plaintext">+libvibrantOGL.$(so): $(libvibrantOGL_deps)</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
719
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC719" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/tools/readdb.c</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="720" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
720
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC720" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/tools/readdb.c</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="721" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
721
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC721" class="line" lang="plaintext">@@ -10167,7 +10167,10 @@ static Int2 FDBFinish (FormatDBPtr</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="722" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
722
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC722" class="line" lang="plaintext"> return 1;</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="723" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
723
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC723" class="line" lang="plaintext"> </span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
724
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC724" class="line" lang="plaintext"> MemSet(dateTime, 0, DATETIME_LENGTH);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="725" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
725
</td>
<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC725" class="line" lang="plaintext">- Nlm_DayTimeStr(dateTime, TRUE, TRUE);</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="726" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
726
</td>
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="plaintext">+ /* SOURCE_DATE_EPOCH specification: "If the value is malformed, the</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="727" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="plaintext">+ build process SHOULD exit with a non-zero error code." */</span>
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<td class="diff-line-num new new_line" data-linenumber="728" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
728
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="plaintext">+ if (!Nlm_DayTimeStr(dateTime, TRUE, TRUE))</span>
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<td class="diff-line-num new new_line" data-linenumber="729" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
729
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="plaintext">+ return 1;</span>
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<td class="diff-line-num new new_line" data-linenumber="730" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="plaintext"> </span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="731" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="plaintext"> /* write db_title and date-time stamp eigth bytes aligned */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="732" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="plaintext"> tmp = title_len + StringLen(dateTime);</span>
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<td class="diff-line-num new new_line" data-linenumber="733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
733
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/vibrant/netscape.c</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
734
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/vibrant/netscape.c</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
735
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="plaintext">@@ -548,9 +548,8 @@ static Boolean NS_LoadNetscape(const cha</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="736" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
736
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="plaintext"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="737" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
738
</td>
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="plaintext"> /* ---------- child process ------------ */</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="739" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
739
</td>
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<pre style="margin: 0;">+<span id="LC739" class="line" lang="plaintext">- if (execlp("netscape", "netscape", url, NULL) < 0 &&</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="740" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
740
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<pre style="margin: 0;">+<span id="LC740" class="line" lang="plaintext">- execl(NETSCAPE_PATH, NETSCAPE_PATH, url, NULL) < 0) {</span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="741" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
741
</td>
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<pre style="margin: 0;">+<span id="LC741" class="line" lang="plaintext">- Message(MSG_ERROR, "Failure to open URL in netscape window");</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
742
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="plaintext">+ if (execlp("sensible-browser", "sensible-browser", url, NULL) < 0) {</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
743
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<pre style="margin: 0;">+<span id="LC743" class="line" lang="plaintext">+ Message(MSG_ERROR, "Failure to open URL in browser window");</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
744
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<pre style="margin: 0;">+<span id="LC744" class="line" lang="plaintext"> exit(1);</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="745" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
745
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<pre style="margin: 0;">+<span id="LC745" class="line" lang="plaintext"> }</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
746
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<pre style="margin: 0;">+<span id="LC746" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
747
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/vibrant/shim3d.c</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
748
</td>
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<pre style="margin: 0;">+<span id="LC748" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/vibrant/shim3d.c</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
749
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<pre style="margin: 0;">+<span id="LC749" class="line" lang="plaintext">@@ -321,6 +321,7 @@</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="750" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
750
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<pre style="margin: 0;">+<span id="LC750" class="line" lang="plaintext"> </span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
751
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<pre style="margin: 0;">+<span id="LC751" class="line" lang="plaintext"> #ifdef _PNG</span>
</pre>
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752
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<pre style="margin: 0;">+<span id="LC752" class="line" lang="plaintext"> #include <png.h> /* must go berore ncbi headers */</span>
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753
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="plaintext">+#include <zlib.h></span>
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754
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<pre style="margin: 0;">+<span id="LC754" class="line" lang="plaintext"> #ifndef png_jmpbuf</span>
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755
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<pre style="margin: 0;">+<span id="LC755" class="line" lang="plaintext"> #define png_jmpbuf(x) ((x)->jmpbuf)</span>
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756
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<pre style="margin: 0;">+<span id="LC756" class="line" lang="plaintext"> #endif</span>
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757
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<pre style="margin: 0;">+<span id="LC757" class="line" lang="plaintext">@@ -339,7 +340,8 @@ NLM_EXTERN void LIBCALL Nlm_HeapSort PRO</span>
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758
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<pre style="margin: 0;">+<span id="LC758" class="line" lang="plaintext"> #include <ddvcolor.h></span>
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759
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<pre style="margin: 0;">+<span id="LC759" class="line" lang="plaintext"> </span>
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760
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<pre style="margin: 0;">+<span id="LC760" class="line" lang="plaintext"> #if defined(_OPENGL) && defined(_PNG)</span>
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761
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<pre style="margin: 0;">+<span id="LC761" class="line" lang="plaintext">-TOGL_Data *Cn3D_GetCurrentOGLData(void); /* in cn3dxprt.c */</span>
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762
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<pre style="margin: 0;">+<span id="LC762" class="line" lang="plaintext">+/* In cn3dxprt.c; declared weak here to avoid dependency loops. */</span>
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763
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<pre style="margin: 0;">+<span id="LC763" class="line" lang="plaintext">+extern TOGL_Data *Cn3D_GetCurrentOGLData(void) __attribute__((weak));</span>
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764
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<pre style="margin: 0;">+<span id="LC764" class="line" lang="plaintext"> #endif</span>
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765
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<pre style="margin: 0;">+<span id="LC765" class="line" lang="plaintext"> </span>
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766
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<pre style="margin: 0;">+<span id="LC766" class="line" lang="plaintext"> </span>
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767
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<pre style="margin: 0;">+<span id="LC767" class="line" lang="plaintext">@@ -2939,7 +2941,15 @@ void Nlm_SaveImagePNG(Nlm_Char *fname)</span>
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768
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<pre style="margin: 0;">+<span id="LC768" class="line" lang="plaintext"> png_structp png_ptr = NULL;</span>
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769
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<pre style="margin: 0;">+<span id="LC769" class="line" lang="plaintext"> png_infop info_ptr = NULL;</span>
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770
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<pre style="margin: 0;">+<span id="LC770" class="line" lang="plaintext"> Nlm_Boolean doInterlacing = TRUE;</span>
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771
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<pre style="margin: 0;">+<span id="LC771" class="line" lang="plaintext">- TOGL_Data *OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData());</span>
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772
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<pre style="margin: 0;">+<span id="LC772" class="line" lang="plaintext">+ TOGL_Data *OGL_Data;</span>
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773
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<pre style="margin: 0;">+<span id="LC773" class="line" lang="plaintext">+ </span>
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774
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<pre style="margin: 0;">+<span id="LC774" class="line" lang="plaintext">+ if (!Cn3D_GetCurrentOGLData) {</span>
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775
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<pre style="margin: 0;">+<span id="LC775" class="line" lang="plaintext">+ Message(MSG_ERROR, "PNG output unavailable; "</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="776" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
776
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<pre style="margin: 0;">+<span id="LC776" class="line" lang="plaintext">+ "please relink application with -lncbicn3d.");</span>
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777
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<pre style="margin: 0;">+<span id="LC777" class="line" lang="plaintext">+ return;</span>
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778
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<pre style="margin: 0;">+<span id="LC778" class="line" lang="plaintext">+ }</span>
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779
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<pre style="margin: 0;">+<span id="LC779" class="line" lang="plaintext">+ </span>
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780
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<pre style="margin: 0;">+<span id="LC780" class="line" lang="plaintext">+ OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData());</span>
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781
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<pre style="margin: 0;">+<span id="LC781" class="line" lang="plaintext"> </span>
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782
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<pre style="margin: 0;">+<span id="LC782" class="line" lang="plaintext"> #if defined(WIN_MOTIF)</span>
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783
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<pre style="margin: 0;">+<span id="LC783" class="line" lang="plaintext"> GLint glSize;</span>
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<td class="diff-line-num new new_line" data-linenumber="784" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
784
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<pre style="margin: 0;">+<span id="LC784" class="line" lang="plaintext">@@ -3720,4 +3730,3 @@ void Nlm_AddHalfWorm3D(Nlm_Picture3D pic</span>
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785
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<pre style="margin: 0;">+<span id="LC785" class="line" lang="plaintext"> if (fblock)</span>
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786
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<pre style="margin: 0;">+<span id="LC786" class="line" lang="plaintext"> MemFree(fblock);</span>
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787
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<pre style="margin: 0;">+<span id="LC787" class="line" lang="plaintext"> }</span>
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788
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<pre style="margin: 0;">+<span id="LC788" class="line" lang="plaintext">-</span>
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789
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<pre style="margin: 0;">+<span id="LC789" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/vibrant/vibmain.c</span>
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790
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<pre style="margin: 0;">+<span id="LC790" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/vibrant/vibmain.c</span>
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791
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<pre style="margin: 0;">+<span id="LC791" class="line" lang="plaintext">@@ -44,6 +44,21 @@</span>
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792
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<pre style="margin: 0;">+<span id="LC792" class="line" lang="plaintext"> </span>
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793
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<pre style="margin: 0;">+<span id="LC793" class="line" lang="plaintext"> </span>
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794
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<pre style="margin: 0;">+<span id="LC794" class="line" lang="plaintext"> </span>
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795
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<pre style="margin: 0;">+<span id="LC795" class="line" lang="plaintext">+extern Nlm_Int2 Nlm_Main(void) __attribute__((weak));</span>
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796
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<pre style="margin: 0;">+<span id="LC796" class="line" lang="plaintext">+</span>
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797
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<pre style="margin: 0;">+<span id="LC797" class="line" lang="plaintext">+static Nlm_Int2 s_CallNlmMain(void)</span>
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798
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<pre style="margin: 0;">+<span id="LC798" class="line" lang="plaintext">+{</span>
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799
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<pre style="margin: 0;">+<span id="LC799" class="line" lang="plaintext">+ if (Nlm_Main) {</span>
</pre>
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800
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<pre style="margin: 0;">+<span id="LC800" class="line" lang="plaintext">+ return Nlm_Main();</span>
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801
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<pre style="margin: 0;">+<span id="LC801" class="line" lang="plaintext">+ } else {</span>
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802
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<pre style="margin: 0;">+<span id="LC802" class="line" lang="plaintext">+ ErrPost(0, 0, "Neither main nor Nlm_Main defined by program.");</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="803" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
803
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<pre style="margin: 0;">+<span id="LC803" class="line" lang="plaintext">+ return -1;</span>
</pre>
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804
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<pre style="margin: 0;">+<span id="LC804" class="line" lang="plaintext">+ }</span>
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805
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<pre style="margin: 0;">+<span id="LC805" class="line" lang="plaintext">+}</span>
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806
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<pre style="margin: 0;">+<span id="LC806" class="line" lang="plaintext">+</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="807" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
807
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<pre style="margin: 0;">+<span id="LC807" class="line" lang="plaintext">+#define Nlm_Main s_CallNlmMain</span>
</pre>
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808
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<pre style="margin: 0;">+<span id="LC808" class="line" lang="plaintext">+</span>
</pre>
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809
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<pre style="margin: 0;">+<span id="LC809" class="line" lang="plaintext">+</span>
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810
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<pre style="margin: 0;">+<span id="LC810" class="line" lang="plaintext"> #ifdef WIN_MAC</span>
</pre>
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811
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<pre style="margin: 0;">+<span id="LC811" class="line" lang="plaintext"> #ifdef OS_UNIX_DARWIN</span>
</pre>
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812
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<pre style="margin: 0;">+<span id="LC812" class="line" lang="plaintext"> int main (int argc, char *argv[]) </span>
</pre>
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813
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<pre style="margin: 0;">+<span id="LC813" class="line" lang="plaintext">--- ncbi-tools6-6.1.20170106.orig/vibrant/vibwndws.c</span>
</pre>
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814
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="plaintext">+++ ncbi-tools6-6.1.20170106/vibrant/vibwndws.c</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="815" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
815
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<pre style="margin: 0;">+<span id="LC815" class="line" lang="plaintext">@@ -6818,7 +6818,7 @@ extern void Nlm_VibMainPrelude (int argc</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="816" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
816
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="plaintext"> Nlm_InitPrompt ();</span>
</pre>
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817
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<pre style="margin: 0;">+<span id="LC817" class="line" lang="plaintext"> Nlm_InitSlate ();</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
818
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<pre style="margin: 0;">+<span id="LC818" class="line" lang="plaintext"> Nlm_InitTexts ();</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
819
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<pre style="margin: 0;">+<span id="LC819" class="line" lang="plaintext">- if (! Nlm_SetupWindows ()) return;</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="820" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
820
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<pre style="margin: 0;">+<span id="LC820" class="line" lang="plaintext">+ if (! Nlm_SetupWindows ()) exit(1);</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
821
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<pre style="margin: 0;">+<span id="LC821" class="line" lang="plaintext"> Nlm_RegisterWindows ();</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
822
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<pre style="margin: 0;">+<span id="LC822" class="line" lang="plaintext"> Nlm_RegisterTexts ();</span>
</pre>
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823
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<pre style="margin: 0;">+<span id="LC823" class="line" lang="plaintext"> Nlm_RegisterSlates ();</span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian-changes</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#53399f7f2dd7535c43cdcfa511a9c06044a9c238"><strong>debian/source/format</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0 (quilt)</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#d0b2adb0358f0eab7dd3bb1849dd4e795a81f242"><strong>debian/source/include-binaries</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/test-data/nc0305.aso.gz</span></pre>
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<li id="a7049aeda233d8f8855152e9495116f2f49e6686">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#a7049aeda233d8f8855152e9495116f2f49e6686"><strong>debian/source/options</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">single-debian-patch</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/edfa9b84c7fa34e800e1b2fe1cc70d59a1cee424...48f368cbae4c19629394db7392f7a99ba92e73de#afac83bfe6c20c6d1e145cc41cb66cb532a8fd9e"><strong>debian/source/patch-header</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Combined patches from git.</span></pre>
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